data_2BEZ # _entry.id 2BEZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.324 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2BEZ PDBE EBI-21828 WWPDB D_1290021828 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2BEQ _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'STRUCTURE OF A PROTEOLYTICALLY RESISTANT CORE FROM THE SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS S2 FUSION PROTEIN' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2BEZ _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2004-12-02 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Supekar, V.M.' 1 'Bruckmann, C.' 2 'Ingallinella, P.' 3 'Bianchi, E.' 4 'Pessi, A.' 5 'Carfi, A.' 6 # _citation.id primary _citation.title 'Structure of a Proteolytically Resistant Core from the Severe Acute Respiratory Syndrome Coronavirus S2 Fusion Protein' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 101 _citation.page_first 17958 _citation.page_last ? _citation.year 2004 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15604146 _citation.pdbx_database_id_DOI 10.1073/PNAS.0406128102 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Supekar, V.M.' 1 ? primary 'Bruckmann, C.' 2 ? primary 'Ingallinella, P.' 3 ? primary 'Bianchi, E.' 4 ? primary 'Pessi, A.' 5 ? primary 'Carfi, A.' 6 ? # _cell.entry_id 2BEZ _cell.length_a 37.345 _cell.length_b 37.345 _cell.length_c 469.823 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BEZ _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Spike glycoprotein' 8426.370 1 ? ? 'RESIDUES 896-972' ? 2 polymer man 'Spike glycoprotein' 4554.011 1 ? ? 'RESIDUES 1142-1183' ? 3 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 4 water nat water 18.015 78 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'S glycoprotein,E2,Peplomer protein' 2 'S glycoprotein,E2,Peplomer protein' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no NVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAE NVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAE C ? 2 'polypeptide(L)' no no TSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQ TSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQ F ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASN n 1 2 VAL n 1 3 LEU n 1 4 TYR n 1 5 GLU n 1 6 ASN n 1 7 GLN n 1 8 LYS n 1 9 GLN n 1 10 ILE n 1 11 ALA n 1 12 ASN n 1 13 GLN n 1 14 PHE n 1 15 ASN n 1 16 LYS n 1 17 ALA n 1 18 ILE n 1 19 SER n 1 20 GLN n 1 21 ILE n 1 22 GLN n 1 23 GLU n 1 24 SER n 1 25 LEU n 1 26 THR n 1 27 THR n 1 28 THR n 1 29 SER n 1 30 THR n 1 31 ALA n 1 32 LEU n 1 33 GLY n 1 34 LYS n 1 35 LEU n 1 36 GLN n 1 37 ASP n 1 38 VAL n 1 39 VAL n 1 40 ASN n 1 41 GLN n 1 42 ASN n 1 43 ALA n 1 44 GLN n 1 45 ALA n 1 46 LEU n 1 47 ASN n 1 48 THR n 1 49 LEU n 1 50 VAL n 1 51 LYS n 1 52 GLN n 1 53 LEU n 1 54 SER n 1 55 SER n 1 56 ASN n 1 57 PHE n 1 58 GLY n 1 59 ALA n 1 60 ILE n 1 61 SER n 1 62 SER n 1 63 VAL n 1 64 LEU n 1 65 ASN n 1 66 ASP n 1 67 ILE n 1 68 LEU n 1 69 SER n 1 70 ARG n 1 71 LEU n 1 72 ASP n 1 73 LYS n 1 74 VAL n 1 75 GLU n 1 76 ALA n 1 77 GLU n 2 1 THR n 2 2 SER n 2 3 PRO n 2 4 ASP n 2 5 VAL n 2 6 ASP n 2 7 LEU n 2 8 GLY n 2 9 ASP n 2 10 ILE n 2 11 SER n 2 12 GLY n 2 13 ILE n 2 14 ASN n 2 15 ALA n 2 16 SER n 2 17 VAL n 2 18 VAL n 2 19 ASN n 2 20 ILE n 2 21 GLN n 2 22 LYS n 2 23 GLU n 2 24 ILE n 2 25 ASP n 2 26 ARG n 2 27 LEU n 2 28 ASN n 2 29 GLU n 2 30 VAL n 2 31 ALA n 2 32 LYS n 2 33 ASN n 2 34 LEU n 2 35 ASN n 2 36 GLU n 2 37 SER n 2 38 LEU n 2 39 ILE n 2 40 ASP n 2 41 LEU n 2 42 GLN n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 77 SARS-CoV ? 'S, 2' ? ? ? ? ? ? 'Human SARS coronavirus' 694009 ? ? ? ? ? ? ? ? 'ESCHERICHIA COLI' 511693 ? ? ? ? ? ? BL21 ? ? ? ? ? ? ? ? PMAL ? ? ? ? ? 2 1 sample 'Biological sequence' 1 42 SARS-CoV ? 'S, 2' ? ? ? ? ? ? 'Human SARS coronavirus' 694009 ? ? ? ? ? ? ? ? 'ESCHERICHIA COLI' 511693 ? ? ? ? ? ? BL21 ? ? ? ? ? ? ? ? PMAL ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP SPIKE_CVHSA P59594 ? 1 NVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAE 896 2 UNP SPIKE_CVHSA P59594 ? 2 TSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQ 1142 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2BEZ C 1 ? 77 ? P59594 896 ? 972 ? 896 972 2 2 2BEZ F 1 ? 42 ? P59594 1142 ? 1183 ? 1142 1183 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2BEZ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.43 _exptl_crystal.density_percent_sol 40 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.50 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.1M TRIS-HCL, PH 7.0, 1.8M AMMONIUM SULPHATE, 0.1M NACL' # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2004-02-07 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.934 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-1' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-1 _diffrn_source.pdbx_wavelength 0.934 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2BEZ _reflns.observed_criterion_sigma_I -2.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.000 _reflns.d_resolution_high 1.600 _reflns.number_obs 16726 _reflns.number_all ? _reflns.percent_possible_obs 99.5 _reflns.pdbx_Rmerge_I_obs 0.08000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 10.600 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.60 _reflns_shell.d_res_low 1.66 _reflns_shell.percent_possible_all 97.9 _reflns_shell.Rmerge_I_obs 0.50000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 7.80 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2BEZ _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 16713 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 1.60 _refine.ls_percent_reflns_obs 99.5 _refine.ls_R_factor_obs 0.208 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.206 _refine.ls_R_factor_R_free 0.244 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.900 _refine.ls_number_reflns_R_free 868 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.951 _refine.correlation_coeff_Fo_to_Fc_free 0.900 _refine.B_iso_mean 33.65 _refine.aniso_B[1][1] 1.03000 _refine.aniso_B[2][2] 1.03000 _refine.aniso_B[3][3] -1.54000 _refine.aniso_B[1][2] 0.51000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. POOR ELECTRON DENSITY FOR HR1 AA 896- 907 AND FOR HR2 AA 1181-1183. HR1 AA 896-907 WERE MODELLED AS ALANINES. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SIRAS _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.091 _refine.pdbx_overall_ESU_R_Free 0.095 _refine.overall_SU_ML 0.048 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 1.328 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 849 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.number_atoms_solvent 78 _refine_hist.number_atoms_total 933 _refine_hist.d_res_high 1.60 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.018 0.021 ? 853 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 812 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.589 1.961 ? 1161 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.915 3.000 ? 1908 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.232 5.000 ? 117 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.106 0.200 ? 155 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 964 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 134 'X-RAY DIFFRACTION' ? r_nbd_refined 0.502 0.200 ? 265 'X-RAY DIFFRACTION' ? r_nbd_other 0.244 0.200 ? 864 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other 0.091 0.200 ? 582 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.229 0.200 ? 51 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.263 0.200 ? 20 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.264 0.200 ? 95 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.416 0.200 ? 20 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.195 1.500 ? 589 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2.114 2.000 ? 935 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 3.243 3.000 ? 264 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 5.154 4.500 ? 226 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.60 _refine_ls_shell.d_res_low 1.64 _refine_ls_shell.number_reflns_R_work 1197 _refine_ls_shell.R_factor_R_work 0.2450 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.2250 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 47 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2BEZ _struct.title 'Structure of a proteolitically resistant core from the severe acute respiratory syndrome coronavirus S2 fusion protein' _struct.pdbx_descriptor 'E2 GLYCOPROTEIN' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2BEZ _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' _struct_keywords.text 'COILED COIL, MEMBRANE FUSION, SEVERE ACUTE RESPIRATORY SYNDROME, VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 5 ? GLU A 77 ? GLU C 900 GLU C 972 1 ? 73 HELX_P HELX_P2 2 ILE B 20 ? LEU B 34 ? ILE F 1161 LEU F 1175 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 8 _struct_site.details 'BINDING SITE FOR RESIDUE GOL C1973' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 GLN A 44 ? GLN C 939 . ? 1_555 ? 2 AC1 8 THR A 48 ? THR C 943 . ? 1_555 ? 3 AC1 8 LYS A 51 ? LYS C 946 . ? 1_555 ? 4 AC1 8 VAL A 63 ? VAL C 958 . ? 1_555 ? 5 AC1 8 ASP A 66 ? ASP C 961 . ? 1_555 ? 6 AC1 8 HOH D . ? HOH C 2034 . ? 1_555 ? 7 AC1 8 HOH D . ? HOH C 2049 . ? 1_555 ? 8 AC1 8 PRO B 3 ? PRO F 1144 . ? 1_555 ? # _database_PDB_matrix.entry_id 2BEZ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2BEZ _atom_sites.fract_transf_matrix[1][1] 0.026777 _atom_sites.fract_transf_matrix[1][2] 0.015460 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.030920 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.002128 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASN 1 896 896 ASN ASN C . n A 1 2 VAL 2 897 897 VAL VAL C . n A 1 3 LEU 3 898 898 LEU LEU C . n A 1 4 TYR 4 899 899 TYR TYR C . n A 1 5 GLU 5 900 900 GLU GLU C . n A 1 6 ASN 6 901 901 ASN ASN C . n A 1 7 GLN 7 902 902 GLN GLN C . n A 1 8 LYS 8 903 903 LYS LYS C . n A 1 9 GLN 9 904 904 GLN GLN C . n A 1 10 ILE 10 905 905 ILE ILE C . n A 1 11 ALA 11 906 906 ALA ALA C . n A 1 12 ASN 12 907 907 ASN ASN C . n A 1 13 GLN 13 908 908 GLN GLN C . n A 1 14 PHE 14 909 909 PHE PHE C . n A 1 15 ASN 15 910 910 ASN ASN C . n A 1 16 LYS 16 911 911 LYS LYS C . n A 1 17 ALA 17 912 912 ALA ALA C . n A 1 18 ILE 18 913 913 ILE ILE C . n A 1 19 SER 19 914 914 SER SER C . n A 1 20 GLN 20 915 915 GLN GLN C . n A 1 21 ILE 21 916 916 ILE ILE C . n A 1 22 GLN 22 917 917 GLN GLN C . n A 1 23 GLU 23 918 918 GLU GLU C . n A 1 24 SER 24 919 919 SER SER C . n A 1 25 LEU 25 920 920 LEU LEU C . n A 1 26 THR 26 921 921 THR THR C . n A 1 27 THR 27 922 922 THR THR C . n A 1 28 THR 28 923 923 THR THR C . n A 1 29 SER 29 924 924 SER SER C . n A 1 30 THR 30 925 925 THR THR C . n A 1 31 ALA 31 926 926 ALA ALA C . n A 1 32 LEU 32 927 927 LEU LEU C . n A 1 33 GLY 33 928 928 GLY GLY C . n A 1 34 LYS 34 929 929 LYS LYS C . n A 1 35 LEU 35 930 930 LEU LEU C . n A 1 36 GLN 36 931 931 GLN GLN C . n A 1 37 ASP 37 932 932 ASP ASP C . n A 1 38 VAL 38 933 933 VAL VAL C . n A 1 39 VAL 39 934 934 VAL VAL C . n A 1 40 ASN 40 935 935 ASN ASN C . n A 1 41 GLN 41 936 936 GLN GLN C . n A 1 42 ASN 42 937 937 ASN ASN C . n A 1 43 ALA 43 938 938 ALA ALA C . n A 1 44 GLN 44 939 939 GLN GLN C . n A 1 45 ALA 45 940 940 ALA ALA C . n A 1 46 LEU 46 941 941 LEU LEU C . n A 1 47 ASN 47 942 942 ASN ASN C . n A 1 48 THR 48 943 943 THR THR C . n A 1 49 LEU 49 944 944 LEU LEU C . n A 1 50 VAL 50 945 945 VAL VAL C . n A 1 51 LYS 51 946 946 LYS LYS C . n A 1 52 GLN 52 947 947 GLN GLN C . n A 1 53 LEU 53 948 948 LEU LEU C . n A 1 54 SER 54 949 949 SER SER C . n A 1 55 SER 55 950 950 SER SER C . n A 1 56 ASN 56 951 951 ASN ASN C . n A 1 57 PHE 57 952 952 PHE PHE C . n A 1 58 GLY 58 953 953 GLY GLY C . n A 1 59 ALA 59 954 954 ALA ALA C . n A 1 60 ILE 60 955 955 ILE ILE C . n A 1 61 SER 61 956 956 SER SER C . n A 1 62 SER 62 957 957 SER SER C . n A 1 63 VAL 63 958 958 VAL VAL C . n A 1 64 LEU 64 959 959 LEU LEU C . n A 1 65 ASN 65 960 960 ASN ASN C . n A 1 66 ASP 66 961 961 ASP ASP C . n A 1 67 ILE 67 962 962 ILE ILE C . n A 1 68 LEU 68 963 963 LEU LEU C . n A 1 69 SER 69 964 964 SER SER C . n A 1 70 ARG 70 965 965 ARG ARG C . n A 1 71 LEU 71 966 966 LEU LEU C . n A 1 72 ASP 72 967 967 ASP ASP C . n A 1 73 LYS 73 968 968 LYS LYS C . n A 1 74 VAL 74 969 969 VAL VAL C . n A 1 75 GLU 75 970 970 GLU GLU C . n A 1 76 ALA 76 971 971 ALA ALA C . n A 1 77 GLU 77 972 972 GLU GLU C . n B 2 1 THR 1 1142 1142 THR THR F . n B 2 2 SER 2 1143 1143 SER SER F . n B 2 3 PRO 3 1144 1144 PRO PRO F . n B 2 4 ASP 4 1145 1145 ASP ASP F . n B 2 5 VAL 5 1146 1146 VAL VAL F . n B 2 6 ASP 6 1147 1147 ASP ASP F . n B 2 7 LEU 7 1148 1148 LEU LEU F . n B 2 8 GLY 8 1149 1149 GLY GLY F . n B 2 9 ASP 9 1150 1150 ASP ASP F . n B 2 10 ILE 10 1151 1151 ILE ILE F . n B 2 11 SER 11 1152 1152 SER SER F . n B 2 12 GLY 12 1153 1153 GLY GLY F . n B 2 13 ILE 13 1154 1154 ILE ILE F . n B 2 14 ASN 14 1155 1155 ASN ASN F . n B 2 15 ALA 15 1156 1156 ALA ALA F . n B 2 16 SER 16 1157 1157 SER SER F . n B 2 17 VAL 17 1158 1158 VAL VAL F . n B 2 18 VAL 18 1159 1159 VAL VAL F . n B 2 19 ASN 19 1160 1160 ASN ASN F . n B 2 20 ILE 20 1161 1161 ILE ILE F . n B 2 21 GLN 21 1162 1162 GLN GLN F . n B 2 22 LYS 22 1163 1163 LYS LYS F . n B 2 23 GLU 23 1164 1164 GLU GLU F . n B 2 24 ILE 24 1165 1165 ILE ILE F . n B 2 25 ASP 25 1166 1166 ASP ASP F . n B 2 26 ARG 26 1167 1167 ARG ARG F . n B 2 27 LEU 27 1168 1168 LEU LEU F . n B 2 28 ASN 28 1169 1169 ASN ASN F . n B 2 29 GLU 29 1170 1170 GLU GLU F . n B 2 30 VAL 30 1171 1171 VAL VAL F . n B 2 31 ALA 31 1172 1172 ALA ALA F . n B 2 32 LYS 32 1173 1173 LYS LYS F . n B 2 33 ASN 33 1174 1174 ASN ASN F . n B 2 34 LEU 34 1175 1175 LEU LEU F . n B 2 35 ASN 35 1176 1176 ASN ASN F . n B 2 36 GLU 36 1177 1177 GLU GLU F . n B 2 37 SER 37 1178 1178 SER SER F . n B 2 38 LEU 38 1179 1179 LEU LEU F . n B 2 39 ILE 39 1180 1180 ILE ILE F . n B 2 40 ASP 40 1181 1181 ASP ASP F . n B 2 41 LEU 41 1182 1182 LEU LEU F . n B 2 42 GLN 42 1183 1183 GLN GLN F . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL 1 1973 1973 GOL GOL C . D 4 HOH 1 2001 2001 HOH HOH C . D 4 HOH 2 2002 2002 HOH HOH C . D 4 HOH 3 2003 2003 HOH HOH C . D 4 HOH 4 2004 2004 HOH HOH C . D 4 HOH 5 2005 2005 HOH HOH C . D 4 HOH 6 2006 2006 HOH HOH C . D 4 HOH 7 2007 2007 HOH HOH C . D 4 HOH 8 2008 2008 HOH HOH C . D 4 HOH 9 2009 2009 HOH HOH C . D 4 HOH 10 2010 2010 HOH HOH C . D 4 HOH 11 2011 2011 HOH HOH C . D 4 HOH 12 2012 2012 HOH HOH C . D 4 HOH 13 2013 2013 HOH HOH C . D 4 HOH 14 2014 2014 HOH HOH C . D 4 HOH 15 2015 2015 HOH HOH C . D 4 HOH 16 2016 2016 HOH HOH C . D 4 HOH 17 2017 2017 HOH HOH C . D 4 HOH 18 2018 2018 HOH HOH C . D 4 HOH 19 2019 2019 HOH HOH C . D 4 HOH 20 2020 2020 HOH HOH C . D 4 HOH 21 2021 2021 HOH HOH C . D 4 HOH 22 2022 2022 HOH HOH C . D 4 HOH 23 2023 2023 HOH HOH C . D 4 HOH 24 2024 2024 HOH HOH C . D 4 HOH 25 2025 2025 HOH HOH C . D 4 HOH 26 2026 2026 HOH HOH C . D 4 HOH 27 2027 2027 HOH HOH C . D 4 HOH 28 2028 2028 HOH HOH C . D 4 HOH 29 2029 2029 HOH HOH C . D 4 HOH 30 2030 2030 HOH HOH C . D 4 HOH 31 2031 2031 HOH HOH C . D 4 HOH 32 2032 2032 HOH HOH C . D 4 HOH 33 2033 2033 HOH HOH C . D 4 HOH 34 2034 2034 HOH HOH C . D 4 HOH 35 2035 2035 HOH HOH C . D 4 HOH 36 2036 2036 HOH HOH C . D 4 HOH 37 2037 2037 HOH HOH C . D 4 HOH 38 2038 2038 HOH HOH C . D 4 HOH 39 2039 2039 HOH HOH C . D 4 HOH 40 2040 2040 HOH HOH C . D 4 HOH 41 2041 2041 HOH HOH C . D 4 HOH 42 2042 2042 HOH HOH C . D 4 HOH 43 2043 2043 HOH HOH C . D 4 HOH 44 2044 2044 HOH HOH C . D 4 HOH 45 2045 2045 HOH HOH C . D 4 HOH 46 2046 2046 HOH HOH C . D 4 HOH 47 2047 2047 HOH HOH C . D 4 HOH 48 2048 2048 HOH HOH C . D 4 HOH 49 2049 2049 HOH HOH C . E 4 HOH 1 2001 2001 HOH HOH F . E 4 HOH 2 2002 2002 HOH HOH F . E 4 HOH 3 2003 2003 HOH HOH F . E 4 HOH 4 2004 2004 HOH HOH F . E 4 HOH 5 2005 2005 HOH HOH F . E 4 HOH 6 2006 2006 HOH HOH F . E 4 HOH 7 2007 2007 HOH HOH F . E 4 HOH 8 2008 2008 HOH HOH F . E 4 HOH 9 2009 2009 HOH HOH F . E 4 HOH 10 2010 2010 HOH HOH F . E 4 HOH 11 2011 2011 HOH HOH F . E 4 HOH 12 2012 2012 HOH HOH F . E 4 HOH 13 2013 2013 HOH HOH F . E 4 HOH 14 2014 2014 HOH HOH F . E 4 HOH 15 2015 2015 HOH HOH F . E 4 HOH 16 2016 2016 HOH HOH F . E 4 HOH 17 2017 2017 HOH HOH F . E 4 HOH 18 2018 2018 HOH HOH F . E 4 HOH 19 2019 2019 HOH HOH F . E 4 HOH 20 2020 2020 HOH HOH F . E 4 HOH 21 2021 2021 HOH HOH F . E 4 HOH 22 2022 2022 HOH HOH F . E 4 HOH 23 2023 2023 HOH HOH F . E 4 HOH 24 2024 2024 HOH HOH F . E 4 HOH 25 2025 2025 HOH HOH F . E 4 HOH 26 2026 2026 HOH HOH F . E 4 HOH 27 2027 2027 HOH HOH F . E 4 HOH 28 2028 2028 HOH HOH F . E 4 HOH 29 2029 2029 HOH HOH F . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_675 -y+1,x-y+2,z -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 64.6834374087 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_465 -x+y-1,-x+1,z -0.5000000000 0.8660254038 0.0000000000 -56.0175000000 -0.8660254038 -0.5000000000 0.0000000000 32.3417187043 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-12-22 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-06-28 5 'Structure model' 1 4 2020-04-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Database references' 5 5 'Structure model' Other 6 5 'Structure model' 'Source and taxonomy' 7 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' entity 3 5 'Structure model' entity_name_com 4 5 'Structure model' entity_src_gen 5 5 'Structure model' pdbx_database_status 6 5 'Structure model' struct_ref # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.name' 2 5 'Structure model' '_entity.pdbx_description' 3 5 'Structure model' '_entity_name_com.name' 4 5 'Structure model' '_entity_src_gen.gene_src_common_name' 5 5 'Structure model' '_entity_src_gen.gene_src_strain' 6 5 'Structure model' '_entity_src_gen.pdbx_beg_seq_num' 7 5 'Structure model' '_entity_src_gen.pdbx_end_seq_num' 8 5 'Structure model' '_entity_src_gen.pdbx_gene_src_gene' 9 5 'Structure model' '_entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id' 10 5 'Structure model' '_entity_src_gen.pdbx_gene_src_scientific_name' 11 5 'Structure model' '_entity_src_gen.pdbx_seq_type' 12 5 'Structure model' '_pdbx_database_status.status_code_sf' 13 5 'Structure model' '_struct_ref.db_code' 14 5 'Structure model' '_struct_ref.pdbx_align_begin' 15 5 'Structure model' '_struct_ref.pdbx_seq_one_letter_code' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 CNS phasing . ? 3 ARP/wARP phasing . ? 4 REFMAC refinement 5.1.24 ? 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 ND2 _pdbx_validate_close_contact.auth_asym_id_1 F _pdbx_validate_close_contact.auth_comp_id_1 ASN _pdbx_validate_close_contact.auth_seq_id_1 1155 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 A _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 F _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 2018 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.76 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB F ASP 1145 ? ? CG F ASP 1145 ? ? OD2 F ASP 1145 ? ? 124.07 118.30 5.77 0.90 N 2 1 CB F ASP 1166 ? ? CG F ASP 1166 ? ? OD2 F ASP 1166 ? ? 124.55 118.30 6.25 0.90 N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 C ASN 896 ? CG ? A ASN 1 CG 2 1 Y 1 C ASN 896 ? OD1 ? A ASN 1 OD1 3 1 Y 1 C ASN 896 ? ND2 ? A ASN 1 ND2 4 1 Y 1 C VAL 897 ? CG1 ? A VAL 2 CG1 5 1 Y 1 C VAL 897 ? CG2 ? A VAL 2 CG2 6 1 Y 1 C LEU 898 ? CG ? A LEU 3 CG 7 1 Y 1 C LEU 898 ? CD1 ? A LEU 3 CD1 8 1 Y 1 C LEU 898 ? CD2 ? A LEU 3 CD2 9 1 Y 1 C TYR 899 ? CG ? A TYR 4 CG 10 1 Y 1 C TYR 899 ? CD1 ? A TYR 4 CD1 11 1 Y 1 C TYR 899 ? CD2 ? A TYR 4 CD2 12 1 Y 1 C TYR 899 ? CE1 ? A TYR 4 CE1 13 1 Y 1 C TYR 899 ? CE2 ? A TYR 4 CE2 14 1 Y 1 C TYR 899 ? CZ ? A TYR 4 CZ 15 1 Y 1 C TYR 899 ? OH ? A TYR 4 OH 16 1 Y 1 C GLU 900 ? CG ? A GLU 5 CG 17 1 Y 1 C GLU 900 ? CD ? A GLU 5 CD 18 1 Y 1 C GLU 900 ? OE1 ? A GLU 5 OE1 19 1 Y 1 C GLU 900 ? OE2 ? A GLU 5 OE2 20 1 Y 1 C ASN 901 ? CG ? A ASN 6 CG 21 1 Y 1 C ASN 901 ? OD1 ? A ASN 6 OD1 22 1 Y 1 C ASN 901 ? ND2 ? A ASN 6 ND2 23 1 Y 1 C GLN 902 ? CG ? A GLN 7 CG 24 1 Y 1 C GLN 902 ? CD ? A GLN 7 CD 25 1 Y 1 C GLN 902 ? OE1 ? A GLN 7 OE1 26 1 Y 1 C GLN 902 ? NE2 ? A GLN 7 NE2 27 1 Y 1 C LYS 903 ? CG ? A LYS 8 CG 28 1 Y 1 C LYS 903 ? CD ? A LYS 8 CD 29 1 Y 1 C LYS 903 ? CE ? A LYS 8 CE 30 1 Y 1 C LYS 903 ? NZ ? A LYS 8 NZ 31 1 Y 1 C GLN 904 ? CG ? A GLN 9 CG 32 1 Y 1 C GLN 904 ? CD ? A GLN 9 CD 33 1 Y 1 C GLN 904 ? OE1 ? A GLN 9 OE1 34 1 Y 1 C GLN 904 ? NE2 ? A GLN 9 NE2 35 1 Y 1 C ILE 905 ? CG1 ? A ILE 10 CG1 36 1 Y 1 C ILE 905 ? CG2 ? A ILE 10 CG2 37 1 Y 1 C ILE 905 ? CD1 ? A ILE 10 CD1 38 1 Y 1 C ASN 907 ? CG ? A ASN 12 CG 39 1 Y 1 C ASN 907 ? OD1 ? A ASN 12 OD1 40 1 Y 1 C ASN 907 ? ND2 ? A ASN 12 ND2 41 1 Y 1 C LYS 911 ? CG ? A LYS 16 CG 42 1 Y 1 C LYS 911 ? CD ? A LYS 16 CD 43 1 Y 1 C LYS 911 ? CE ? A LYS 16 CE 44 1 Y 1 C LYS 911 ? NZ ? A LYS 16 NZ 45 1 Y 1 C GLN 936 ? CB ? A GLN 41 CB 46 1 Y 1 C GLN 936 ? CG ? A GLN 41 CG 47 1 Y 1 C GLN 936 ? CD ? A GLN 41 CD 48 1 Y 1 C GLU 972 ? CG ? A GLU 77 CG 49 1 Y 1 C GLU 972 ? CD ? A GLU 77 CD 50 1 Y 1 C GLU 972 ? OE1 ? A GLU 77 OE1 51 1 Y 1 C GLU 972 ? OE2 ? A GLU 77 OE2 52 1 Y 1 F ASN 1155 ? CG ? B ASN 14 CG 53 1 Y 1 F GLU 1170 ? CG ? B GLU 29 CG 54 1 Y 1 F GLU 1170 ? CD ? B GLU 29 CD 55 1 Y 1 F GLU 1170 ? OE1 ? B GLU 29 OE1 56 1 Y 1 F GLU 1170 ? OE2 ? B GLU 29 OE2 57 1 Y 1 F LYS 1173 ? CG ? B LYS 32 CG 58 1 Y 1 F LYS 1173 ? CD ? B LYS 32 CD 59 1 Y 1 F LYS 1173 ? CE ? B LYS 32 CE 60 1 Y 1 F LYS 1173 ? NZ ? B LYS 32 NZ # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 GLYCEROL GOL 4 water HOH #