HEADER PEPTIDOGLYCAN 16-DEC-04 2BG1 TITLE ACTIVE SITE RESTRUCTURING REGULATES LIGAND RECOGNITION IN CLASSA TITLE 2 PENICILLIN-BINDING PROTEINS (PBPS) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PENICILLIN-BINDING PROTEIN 1B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TRANSPEPTIDASE DOMAIN, RESIDUES 101-125 AND RESIDUES 323- COMPND 5 791; COMPND 6 SYNONYM: PBP1B; COMPND 7 EC: 2.4.1.129; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 171101; SOURCE 4 STRAIN: R6; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX KEYWDS PEPTIDOGLYCAN, PEPTIDOGLYCAN SYNTHESIS MULTIFUNCTIONAL ENZYME, CELL KEYWDS 2 WALL EXPDTA X-RAY DIFFRACTION AUTHOR P.MACHEBOEUF,A.M.DI GUILMI,V.JOB,T.VERNET,O.DIDEBERG,A.DESSEN REVDAT 3 16-OCT-19 2BG1 1 REMARK REVDAT 2 24-FEB-09 2BG1 1 VERSN REVDAT 1 11-MAR-05 2BG1 0 JRNL AUTH P.MACHEBOEUF,A.M.DI GUILMI,V.JOB,T.VERNET,O.DIDEBERG, JRNL AUTH 2 A.DESSEN JRNL TITL ACTIVE SITE RESTRUCTURING REGULATES LIGAND RECOGNITION IN JRNL TITL 2 CLASS A PENICILLIN-BINDING PROTEINS JRNL REF PROC.NATL.ACAD.SCI.USA V. 102 577 2005 JRNL REFN ISSN 0027-8424 JRNL PMID 15637155 JRNL DOI 10.1073/PNAS.0407186102 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2343068.700 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 56963 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.200 REMARK 3 FREE R VALUE TEST SET COUNT : 5798 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 8378 REMARK 3 BIN R VALUE (WORKING SET) : 0.2120 REMARK 3 BIN FREE R VALUE : 0.2460 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 985 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.008 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3524 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 386 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.05500 REMARK 3 B22 (A**2) : 2.68200 REMARK 3 B33 (A**2) : -1.62700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM SIGMAA (A) : 0.08 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.13 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.178 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.670 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.33 REMARK 3 BSOL : 69.52 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2BG1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-DEC-04. REMARK 100 THE DEPOSITION ID IS D_1290021983. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUN-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56963 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 24.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.04000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM HEPES PH 7.0, 0.8M SO4(NH4)2, REMARK 280 2.8M NACL, PH 7.00, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.98800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.98800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 49.16550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 74.72350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 49.16550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 74.72350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 48.98800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 49.16550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 74.72350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 48.98800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 49.16550 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 74.72350 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2178 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2208 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED MUATION CHAIN A ARG 336 GLN, ARG 686 GLN AND REMARK 400 ARG 687 GLN REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 101 REMARK 465 ILE A 102 REMARK 465 SER A 103 REMARK 465 SER A 104 REMARK 465 ILE A 105 REMARK 465 SER A 106 REMARK 465 GLU A 107 REMARK 465 SER A 111 REMARK 465 ASP A 112 REMARK 465 GLY A 113 REMARK 465 THR A 114 REMARK 465 VAL A 115 REMARK 465 ILE A 116 REMARK 465 ALA A 117 REMARK 465 SER A 118 REMARK 465 ILE A 119 REMARK 465 GLU A 120 REMARK 465 SER A 121 REMARK 465 ASP A 122 REMARK 465 MET A 123 REMARK 465 LEU A 124 REMARK 465 ARG A 125 REMARK 465 GLN A 323 REMARK 465 ASP A 324 REMARK 465 PHE A 325 REMARK 465 LEU A 326 REMARK 465 PRO A 327 REMARK 465 SER A 328 REMARK 465 GLY A 329 REMARK 465 THR A 330 REMARK 465 VAL A 331 REMARK 465 THR A 332 REMARK 465 GLY A 333 REMARK 465 ILE A 334 REMARK 465 SER A 335 REMARK 465 GLN A 336 REMARK 465 LEU A 790 REMARK 465 PRO A 791 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 789 CA C O CB OG REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 SER A 789 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASP A 337 OD1 OD2 REMARK 480 TYR A 340 OH REMARK 480 GLU A 346 CD OE1 OE2 REMARK 480 GLU A 349 CD OE1 OE2 REMARK 480 ARG A 350 CZ NH1 NH2 REMARK 480 GLN A 357 CB CG CD OE1 NE2 REMARK 480 ASN A 360 N CA C O REMARK 480 ALA A 363 N CA CB REMARK 480 LYS A 364 CG CD CE NZ REMARK 480 GLU A 365 CA C O CG CD OE1 OE2 REMARK 480 LYS A 367 CG CD CE NZ REMARK 480 GLU A 369 CG CD OE1 OE2 REMARK 480 GLN A 372 NE2 REMARK 480 LYS A 373 NZ REMARK 480 ARG A 376 CD NE CZ NH1 REMARK 480 ASP A 377 CG REMARK 480 GLU A 384 CD OE2 REMARK 480 LYS A 389 NZ REMARK 480 GLN A 396 CG CD OE1 REMARK 480 LYS A 397 CE REMARK 480 SER A 404 OG REMARK 480 ARG A 419 CZ REMARK 480 GLN A 430 OE1 REMARK 480 ASN A 442 OD1 REMARK 480 TYR A 443 CD1 REMARK 480 GLN A 444 O CG CD OE1 NE2 REMARK 480 GLU A 445 CG CD OE1 OE2 REMARK 480 GLN A 447 CD REMARK 480 ASN A 448 OD1 REMARK 480 ASN A 500 OD1 REMARK 480 LYS A 502 NZ REMARK 480 GLU A 511 CD REMARK 480 ASN A 518 OD1 REMARK 480 ARG A 526 CD NE REMARK 480 GLU A 530 OE2 REMARK 480 LYS A 536 CE NZ REMARK 480 GLU A 540 OE1 REMARK 480 LYS A 541 NZ REMARK 480 GLU A 545 OE1 OE2 REMARK 480 GLU A 561 CG CD OE2 REMARK 480 GLN A 572 OE1 REMARK 480 ASN A 577 OD1 REMARK 480 GLN A 582 CD REMARK 480 LYS A 588 NZ REMARK 480 GLU A 590 OE2 REMARK 480 GLU A 599 CD REMARK 480 GLN A 601 CG CD OE1 NE2 REMARK 480 ASP A 602 CB REMARK 480 LYS A 603 CG CD CE NZ REMARK 480 VAL A 607 CG2 REMARK 480 LYS A 610 NZ REMARK 480 GLU A 622 CG OE1 OE2 REMARK 480 LYS A 633 CD REMARK 480 ASN A 645 CG REMARK 480 THR A 655 CA C REMARK 480 ASN A 656 CG OD1 ND2 REMARK 480 GLN A 657 CD OE1 NE2 REMARK 480 GLU A 659 CD OE1 REMARK 480 ARG A 669 NE REMARK 480 ASN A 681 OD1 REMARK 480 GLN A 686 CB CG CD OE1 NE2 REMARK 480 GLN A 687 CG CD OE1 NE2 REMARK 480 ASN A 695 OD1 REMARK 480 GLN A 706 OE1 NE2 REMARK 480 GLU A 715 OE1 REMARK 480 GLU A 727 CB CG CD OE1 OE2 REMARK 480 LEU A 729 CD1 CD2 REMARK 480 LYS A 735 NZ REMARK 480 PRO A 736 CG REMARK 480 LYS A 738 CG CD CE NZ REMARK 480 SER A 740 OG REMARK 480 VAL A 741 C CB CG1 CG2 REMARK 480 GLU A 742 CA C CB CD OE1 OE2 REMARK 480 GLY A 743 CA O REMARK 480 LYS A 744 N CA CB CG CD CE NZ REMARK 480 GLU A 745 O CB OE1 OE2 REMARK 480 VAL A 746 N CA CG1 CG2 REMARK 480 GLU A 747 CB OE1 REMARK 480 VAL A 748 N CG1 CG2 REMARK 480 SER A 751 CB OG REMARK 480 VAL A 753 CG2 REMARK 480 ALA A 765 CB REMARK 480 SER A 767 OG REMARK 480 TYR A 768 CB REMARK 480 ARG A 769 CD NE CZ NH1 NH2 REMARK 480 ASP A 776 OD2 REMARK 480 GLN A 780 CB OE1 NE2 REMARK 480 SER A 785 OG REMARK 480 ILE A 786 C REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 109 -112.26 -98.08 REMARK 500 ASN A 385 38.42 -150.26 REMARK 500 ASN A 442 108.74 -169.28 REMARK 500 ALA A 459 -141.01 55.96 REMARK 500 ALA A 467 -77.91 -108.48 REMARK 500 ALA A 499 -128.80 63.70 REMARK 500 THR A 504 -101.91 -132.99 REMARK 500 ASN A 576 42.27 -85.16 REMARK 500 ASN A 640 80.35 -163.39 REMARK 500 SER A 691 -63.37 -106.94 REMARK 500 GLU A 742 48.36 35.61 REMARK 500 LYS A 744 141.94 65.26 REMARK 500 ASN A 759 -153.28 -108.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1789 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1790 REMARK 999 REMARK 999 SEQUENCE REMARK 999 STREPTOCOCCUS PNEUMONIAE R6 COMPLETE GENOME DBREF 2BG1 A 101 125 UNP O70038 O70038 101 125 DBREF 2BG1 A 323 791 UNP O70038 O70038 323 791 SEQADV 2BG1 GLN A 686 UNP O70038 ARG 686 ENGINEERED MUTATION SEQADV 2BG1 GLN A 687 UNP O70038 ARG 687 ENGINEERED MUTATION SEQRES 1 A 494 ASP ILE SER SER ILE SER GLU ILE THR TYR SER ASP GLY SEQRES 2 A 494 THR VAL ILE ALA SER ILE GLU SER ASP MET LEU ARG GLN SEQRES 3 A 494 ASP PHE LEU PRO SER GLY THR VAL THR GLY ILE SER GLN SEQRES 4 A 494 ASP TYR LEU TYR PHE THR THR LEU ALA GLU ALA GLN GLU SEQRES 5 A 494 ARG MET TYR ASP TYR LEU ALA GLN ARG ASP ASN VAL SER SEQRES 6 A 494 ALA LYS GLU LEU LYS ASN GLU ALA THR GLN LYS PHE TYR SEQRES 7 A 494 ARG ASP LEU ALA ALA LYS GLU ILE GLU ASN GLY GLY TYR SEQRES 8 A 494 LYS ILE THR THR THR ILE ASP GLN LYS ILE HIS SER ALA SEQRES 9 A 494 MET GLN SER ALA VAL ALA ASP TYR GLY TYR LEU LEU ASP SEQRES 10 A 494 ASP GLY THR GLY ARG VAL GLU VAL GLY ASN VAL LEU MET SEQRES 11 A 494 ASP ASN GLN THR GLY ALA ILE LEU GLY PHE VAL GLY GLY SEQRES 12 A 494 ARG ASN TYR GLN GLU ASN GLN ASN ASN HIS ALA PHE ASP SEQRES 13 A 494 THR LYS ARG SER PRO ALA SER THR THR LYS PRO LEU LEU SEQRES 14 A 494 ALA TYR GLY ILE ALA ILE ASP GLN GLY LEU MET GLY SER SEQRES 15 A 494 GLU THR ILE LEU SER ASN TYR PRO THR ASN PHE ALA ASN SEQRES 16 A 494 GLY ASN PRO ILE MET TYR ALA ASN SER LYS GLY THR GLY SEQRES 17 A 494 MET MET THR LEU GLY GLU ALA LEU ASN TYR SER TRP ASN SEQRES 18 A 494 ILE PRO ALA TYR TRP THR TYR ARG MET LEU ARG GLU ASN SEQRES 19 A 494 GLY VAL ASP VAL LYS GLY TYR MET GLU LYS MET GLY TYR SEQRES 20 A 494 GLU ILE PRO GLU TYR GLY ILE GLU SER LEU PRO MET GLY SEQRES 21 A 494 GLY GLY ILE GLU VAL THR VAL ALA GLN HIS THR ASN GLY SEQRES 22 A 494 TYR GLN THR LEU ALA ASN ASN GLY VAL TYR HIS GLN LYS SEQRES 23 A 494 HIS VAL ILE SER LYS ILE GLU ALA ALA ASP GLY ARG VAL SEQRES 24 A 494 VAL TYR GLU TYR GLN ASP LYS PRO VAL GLN VAL TYR SER SEQRES 25 A 494 LYS ALA THR ALA THR ILE MET GLN GLY LEU LEU ARG GLU SEQRES 26 A 494 VAL LEU SER SER ARG VAL THR THR THR PHE LYS SER ASN SEQRES 27 A 494 LEU THR SER LEU ASN PRO THR LEU ALA ASN ALA ASP TRP SEQRES 28 A 494 ILE GLY LYS THR GLY THR THR ASN GLN ASP GLU ASN MET SEQRES 29 A 494 TRP LEU MET LEU SER THR PRO ARG LEU THR LEU GLY GLY SEQRES 30 A 494 TRP ILE GLY HIS ASP ASP ASN HIS SER LEU SER GLN GLN SEQRES 31 A 494 ALA GLY TYR SER ASN ASN SER ASN TYR MET ALA HIS LEU SEQRES 32 A 494 VAL ASN ALA ILE GLN GLN ALA SER PRO SER ILE TRP GLY SEQRES 33 A 494 ASN GLU ARG PHE ALA LEU ASP PRO SER VAL VAL LYS SER SEQRES 34 A 494 GLU VAL LEU LYS SER THR GLY GLN LYS PRO GLY LYS VAL SEQRES 35 A 494 SER VAL GLU GLY LYS GLU VAL GLU VAL THR GLY SER THR SEQRES 36 A 494 VAL THR SER TYR TRP ALA ASN LYS SER GLY ALA PRO ALA SEQRES 37 A 494 THR SER TYR ARG PHE ALA ILE GLY GLY SER ASP ALA ASP SEQRES 38 A 494 TYR GLN ASN ALA TRP SER SER ILE VAL GLY SER LEU PRO HET SO4 A1789 5 HET CL A1790 1 HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION FORMUL 2 SO4 O4 S 2- FORMUL 3 CL CL 1- FORMUL 4 HOH *386(H2 O) HELIX 1 1 ASP A 337 ASP A 359 1 23 HELIX 2 2 ASN A 368 ASN A 385 1 18 HELIX 3 3 ASP A 395 GLY A 410 1 16 HELIX 4 4 TYR A 411 ASP A 414 5 4 HELIX 5 5 PRO A 458 THR A 461 5 4 HELIX 6 6 THR A 462 ALA A 467 1 6 HELIX 7 7 ALA A 467 GLN A 474 1 8 HELIX 8 8 LEU A 509 SER A 516 1 8 HELIX 9 9 ASN A 518 ASN A 531 1 14 HELIX 10 10 ASP A 534 MET A 542 1 9 HELIX 11 11 SER A 553 GLY A 557 5 5 HELIX 12 12 THR A 563 ASN A 576 1 14 HELIX 13 13 SER A 609 SER A 626 1 18 HELIX 14 14 THR A 631 ASN A 640 1 10 HELIX 15 15 ASN A 640 ASN A 645 1 6 HELIX 16 16 SER A 691 SER A 708 1 18 HELIX 17 17 SER A 775 GLY A 788 1 14 SHEET 1 AA 3 LYS A 389 THR A 392 0 SHEET 2 AA 3 ILE A 586 GLU A 590 -1 N SER A 587 O THR A 391 SHEET 3 AA 3 VAL A 596 GLU A 599 -1 N VAL A 597 O ILE A 589 SHEET 1 AB 5 ILE A 434 VAL A 438 0 SHEET 2 AB 5 GLU A 421 ASP A 428 -1 O ASN A 424 N VAL A 438 SHEET 3 AB 5 LEU A 670 GLY A 677 -1 O THR A 671 N MET A 427 SHEET 4 AB 5 ASN A 660 SER A 666 -1 O MET A 661 N ILE A 676 SHEET 5 AB 5 ILE A 649 GLY A 653 -1 O ILE A 649 N SER A 666 SHEET 1 AC 2 ILE A 482 SER A 484 0 SHEET 2 AC 2 MET A 506 THR A 508 -1 O MET A 507 N LEU A 483 SHEET 1 AD 2 VAL A 579 TYR A 580 0 SHEET 2 AD 2 VAL A 605 GLN A 606 -1 O VAL A 605 N TYR A 580 SHEET 1 AE 2 VAL A 724 LEU A 729 0 SHEET 2 AE 2 THR A 752 TRP A 757 -1 O VAL A 753 N VAL A 728 SHEET 1 AF 2 GLY A 737 SER A 740 0 SHEET 2 AF 2 GLU A 745 VAL A 748 -1 O VAL A 746 N VAL A 739 SITE 1 AC1 7 THR A 563 LYS A 583 HOH A2092 HOH A2220 SITE 2 AC1 7 HOH A2384 HOH A2385 HOH A2386 SITE 1 AC2 4 TYR A 338 LEU A 339 HIS A 399 GLN A 403 CRYST1 98.331 149.447 97.976 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010170 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006691 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010207 0.00000