HEADER HYDROLASE 21-DEC-04 2BGE TITLE STRUCTURE-BASED DESIGN OF PROTEIN TYROSINE PHOSPHATASE-1B TITLE 2 INHIBITORS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN-TYROSINE PHOSPHATASE NON-RECEPTOR TYPE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PTP1B CATALYTIC DOMAIN, RESIDUES 1-321; COMPND 5 SYNONYM: PROTEIN-TYROSINE PHOSPHATASE 1B, PTP-1B; COMPND 6 EC: 3.1.3.48; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS PROTEIN TYROSINE PHOSPHATASE, 1, 2, KEYWDS 2 5-THIADIAZOLIDIN-3-ONE-1, 1-DIOXIDE TEMPLATE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR E.BLACK,J.BREED,A.L.BREEZE,K.EMBREY,R.GARCIA,T.W.GERO, AUTHOR 2 L.GODFREY,P.W.KENNY,A.D.MORLEY,C.A.MINSHULL,A.D.PANNIFER, AUTHOR 3 J.READ,A.REES,D.J.RUSSELL,D.TOADER,J.TUCKER REVDAT 3 07-OCT-15 2BGE 1 SOURCE REMARK VERSN FORMUL REVDAT 2 24-FEB-09 2BGE 1 VERSN REVDAT 1 04-MAY-05 2BGE 0 JRNL AUTH E.BLACK,J.BREED,A.L.BREEZE,K.EMBREY,R.GARCIA, JRNL AUTH 2 T.W.GERO,L.GODFREY,P.W.KENNY,A.D.MORLEY, JRNL AUTH 3 C.A.MINSHULL,A.D.PANNIFER,J.READ,A.REES, JRNL AUTH 4 D.J.RUSSELL,D.TOADER,J.TUCKER JRNL TITL STRUCTURE-BASED DESIGN OF PROTEIN TYROSINE JRNL TITL 2 PHOSPHATASE-1B INHIBITORS JRNL REF BIOORG.MED.CHEM.LETT. V. 15 2503 2005 JRNL REFN ISSN 0960-894X JRNL PMID 15863305 JRNL DOI 10.1016/J.BMCL.2005.03.068 REMARK 2 REMARK 2 RESOLUTION. 1.8 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNX 2000 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.8 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.0 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 44794 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.2183 REMARK 3 FREE R VALUE : 0.2449 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 2247 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2424 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 377 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.502 REMARK 3 B22 (A**2) : -0.502 REMARK 3 B33 (A**2) : 1.003 REMARK 3 B12 (A**2) : -1.150 REMARK 3 B13 (A**2) : 0.000 REMARK 3 B23 (A**2) : 0.000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.2603 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 0.356412 REMARK 3 BSOL : 34.8782 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2BGE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-DEC-04. REMARK 100 THE PDBE ID CODE IS EBI-22066. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-01 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45256 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 43.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.42000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.90333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 69.80667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 69.80667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 34.90333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 299 REMARK 465 GLU A 300 REMARK 465 PRO A 301 REMARK 465 PRO A 302 REMARK 465 PRO A 303 REMARK 465 GLU A 304 REMARK 465 HIS A 305 REMARK 465 ILE A 306 REMARK 465 PRO A 307 REMARK 465 PRO A 308 REMARK 465 PRO A 309 REMARK 465 PRO A 310 REMARK 465 ARG A 311 REMARK 465 PRO A 312 REMARK 465 PRO A 313 REMARK 465 LYS A 314 REMARK 465 ARG A 315 REMARK 465 ILE A 316 REMARK 465 LEU A 317 REMARK 465 GLU A 318 REMARK 465 PRO A 319 REMARK 465 HIS A 320 REMARK 465 ASN A 321 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 ASP A 298 CA C O CB CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 REMARK 500 O HOH A 2125 O HOH A 2234 4656 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 63 -87.67 -41.27 REMARK 500 CYS A 215 -130.16 -135.15 REMARK 500 ILE A 261 107.79 80.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE T2D A1298 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1A5Y RELATED DB: PDB REMARK 900 PROTEIN TYROSINE PHOSPHATASE 1B CYSTEINYL- REMARK 900 PHOSPHATEINTERMEDIATE REMARK 900 RELATED ID: 1AAX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PROTEIN TYROSINE REMARK 900 PHOSPHATASE 1BCOMPLEXED WITH TWO BIS(PARA- REMARK 900 PHOSPHOPHENYL)METHANE (BPPM)MOLECULES REMARK 900 RELATED ID: 1BZC RELATED DB: PDB REMARK 900 HUMAN PTP1B CATALYTIC DOMAIN COMPLEXED WITH REMARK 900 TPI REMARK 900 RELATED ID: 1BZH RELATED DB: PDB REMARK 900 CYCLIC PEPTIDE INHIBITOR OF HUMAN PTP1B REMARK 900 RELATED ID: 1BZJ RELATED DB: PDB REMARK 900 HUMAN PTP1B COMPLEXED WITH TPICOOH REMARK 900 RELATED ID: 1C83 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PROTEIN TYROSINE REMARK 900 PHOSPHATASE 1BCOMPLEXED WITH 6-(OXALYL-AMINO REMARK 900 )-1H-INDOLE-5-CARBOXYLIC ACID REMARK 900 RELATED ID: 1C84 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PROTEIN TYROSINE REMARK 900 PHOSPHATASE 1BCOMPLEXED WITH 3-(OXALYL-AMINO REMARK 900 )-NAPHTHALENE-2-CARBOXLIC ACID REMARK 900 RELATED ID: 1C85 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PROTEIN TYROSINE REMARK 900 PHOSPHATASE 1BCOMPLEXED WITH 2-(OXALYL-AMINO REMARK 900 )-BENZOIC ACID REMARK 900 RELATED ID: 1C86 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PROTEIN TYROSINE REMARK 900 PHOSPHATASE 1B (R47V,D48N) COMPLEXED WITH 2 REMARK 900 -(OXALYL-AMINO-4,7-DIHYDRO-5H-THIENO[2, REMARK 900 3-C]PYRAN-3-CARBOXYLIC ACID REMARK 900 RELATED ID: 1C87 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PROTEIN TYROSINE REMARK 900 PHOSPHATASE 1BCOMPLEXED WITH 2-(OXALYL-AMINO- REMARK 900 4,7-DIHYDRO-5H-THIENO[2,3-C]PYRAN-3- REMARK 900 CARBOXYLIC ACID REMARK 900 RELATED ID: 1C88 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PROTEIN TYROSINE REMARK 900 PHOSPHATASE 1BCOMPLEXED WITH 2-(OXALYL-AMINO REMARK 900 )-4,5,6,7-TETRAHYDRO-THIENO[2,3-C] REMARK 900 PYRIDINE-3-CARBOXYLIC ACID REMARK 900 RELATED ID: 1ECV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PROTEIN TYROSINE REMARK 900 PHOSPHATASE 1BCOMPLEXED WITH 5-IODO-2-( REMARK 900 OXALYL-AMINO)-BENZOIC ACID REMARK 900 RELATED ID: 1EEN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PROTEIN TYROSINE REMARK 900 PHOSPHATASE 1BCOMPLEXED WITH ACETYL-D-A-D- REMARK 900 BPA-PTYR-L-I-P-Q-Q-G REMARK 900 RELATED ID: 1EEO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PROTEIN TYROSINE REMARK 900 PHOSPHATASE 1BCOMPLEXED WITH ACETYL-E-L-E- REMARK 900 F-PTYR-M-D-Y-E-NH2 REMARK 900 RELATED ID: 1G1F RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PROTEIN TYROSINE REMARK 900 PHOSPHATASE 1BCOMPLEXED WITH A TRI- REMARK 900 PHOSPHORYLATED PEPTIDE (RDI(PTR)ETD(PTR)(PTR REMARK 900 )RK) FROM THE INSULIN RECEPTOR KINASE REMARK 900 RELATED ID: 1G1G RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PROTEIN TYROSINE REMARK 900 PHOSPHATASE 1BCOMPLEXED WITH A MONO- REMARK 900 PHOSPHORYLATED PEPTIDE (ETDY(PTR)RKGGKGLL) REMARK 900 FROM THE INSULIN RECEPTOR KINASE REMARK 900 RELATED ID: 1G1H RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PROTEIN TYROSINE REMARK 900 PHOSPHATASE 1BCOMPLEXED WITH A BIS- REMARK 900 PHOSPHORYLATED PEPTIDE (ETD(PTR)(PTR)RKGGKGLL REMARK 900 ) FROM THE INSULIN RECEPTOR KINASE REMARK 900 RELATED ID: 1G7F RELATED DB: PDB REMARK 900 HUMAN PTP1B CATALYTIC DOMAIN COMPLEXED WITH REMARK 900 PNU177496 REMARK 900 RELATED ID: 1G7G RELATED DB: PDB REMARK 900 HUMAN PTP1B CATALYTIC DOMAIN COMPLEXES WITH REMARK 900 PNU179326 REMARK 900 RELATED ID: 1GFY RELATED DB: PDB REMARK 900 RESIDUE 259 IS A KEY DETERMINANT OF REMARK 900 SUBSTRATE SPECIFICITYOF PROTEIN-TYROSINE REMARK 900 PHOSPHATASE 1B AND ALPHA REMARK 900 RELATED ID: 1I57 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF APO HUMAN PTP1B (C215S REMARK 900 ) MUTANT REMARK 900 RELATED ID: 1JF7 RELATED DB: PDB REMARK 900 HUMAN PTP1B CATALYTIC DOMAIN COMPLEXED WITH REMARK 900 PNU177836 REMARK 900 RELATED ID: 1KAK RELATED DB: PDB REMARK 900 HUMAN TYROSINE PHOSPHATASE 1B COMPLEXED WITH REMARK 900 AN INHIBITOR REMARK 900 RELATED ID: 1KAV RELATED DB: PDB REMARK 900 HUMAN TYROSINE PHOSPHATASE 1B COMPLEXED WITH REMARK 900 AN INHIBITOR REMARK 900 RELATED ID: 1L8G RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PTP1B COMPLEXED WITH 7 REMARK 900 -(1,1-DIOXO-1H-BENZO[D]ISOTHIAZOL-3- REMARK 900 YLOXYMETHYL)-2-(OXALYL-AMINO)-4,7-DIHYDRO- REMARK 900 5H-THIENO[2,3-C]PYRAN-3-CARBOXYLIC ACID REMARK 900 RELATED ID: 1LQF RELATED DB: PDB REMARK 900 STRUCTURE OF PTP1B IN COMPLEX WITH A REMARK 900 PEPTIDICBISPHOSPHONATE INHIBITOR REMARK 900 RELATED ID: 1NL9 RELATED DB: PDB REMARK 900 POTENT, SELECTIVE PROTEIN TYROSINE PHOSPHATASE REMARK 900 1B INHIBITORCOMPOUND 12 USING A LINKED- REMARK 900 FRAGMENT STRATEGY REMARK 900 RELATED ID: 1NNY RELATED DB: PDB REMARK 900 POTENT, SELECTIVE PROTEIN TYROSINE PHOSPHATASE REMARK 900 1B INHIBITORCOMPOUND 23 USING A LINKED- REMARK 900 FRAGMENT STRATEGY REMARK 900 RELATED ID: 1NO6 RELATED DB: PDB REMARK 900 POTENT, SELECTIVE PROTEIN TYROSINE PHOSPHATASE REMARK 900 1B INHIBITORCOMPOUND 5 USING A LINKED- REMARK 900 FRAGMENT STRATEGY REMARK 900 RELATED ID: 1NWE RELATED DB: PDB REMARK 900 PTP1B R47C MODIFIED AT C47 WITH N-[4-(2 REMARK 900 -{2-[3-(2-BROMO-ACETYLAMINO)-PROPIONYLAMINO REMARK 900 ]-3-HYDROXY-PROPIONYLAMINO}-ETHYL)-PHENYL]- REMARK 900 OXALAMIC ACID REMARK 900 RELATED ID: 1NWL RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PTP1B COMPLEXED REMARK 900 WITH SP7343-SP7964,A PTYR MIMETIC REMARK 900 RELATED ID: 1NZ7 RELATED DB: PDB REMARK 900 POTENT, SELECTIVE INHIBITORS OF PROTEIN REMARK 900 TYROSINEPHOSPHATASE 1B USING A SECOND REMARK 900 PHOSPHOTYROSINE BINDING SITE,COMPLEXED WITH REMARK 900 COMPOUND 19. REMARK 900 RELATED ID: 1OEM RELATED DB: PDB REMARK 900 PTP1B WITH THE CATALYTIC CYSTEINE OXIDIZED REMARK 900 TO A SULFENYL-AMIDE BOND REMARK 900 RELATED ID: 1OEO RELATED DB: PDB REMARK 900 PTP1B WITH THE CATALYTIC CYSTEINE OXIDIZED REMARK 900 TO SULFONIC ACID REMARK 900 RELATED ID: 1OES RELATED DB: PDB REMARK 900 OXIDATION STATE OF PROTEIN TYROSINE REMARK 900 PHOSPHATASE 1B REMARK 900 RELATED ID: 1OET RELATED DB: PDB REMARK 900 OXIDATION STATE OF PROTEIN TYROSINE REMARK 900 PHOSPHATASE 1B REMARK 900 RELATED ID: 1OEU RELATED DB: PDB REMARK 900 OXIDATION STATE OF PROTEIN TYROSINE REMARK 900 PHOSPHATASE 1B REMARK 900 RELATED ID: 1OEV RELATED DB: PDB REMARK 900 OXIDATION STATE OF PROTEIN TYROSINE REMARK 900 PHOSPHATASE 1B REMARK 900 RELATED ID: 1ONY RELATED DB: PDB REMARK 900 OXALYL-ARYL-AMINO BENZOIC ACID INHIBITORS OF REMARK 900 PTP1B,COMPOUND 17 REMARK 900 RELATED ID: 1ONZ RELATED DB: PDB REMARK 900 OXALYL-ARYL-AMINO BENZOIC ACID INHIBITORS OF REMARK 900 PTP1B,COMPOUND 8B REMARK 900 RELATED ID: 1PA1 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE C215D MUTANT OF REMARK 900 PROTEIN TYROSINEPHOSPHATASE 1B REMARK 900 RELATED ID: 1PH0 RELATED DB: PDB REMARK 900 NON-CARBOXYLIC ACID-CONTAINING INHIBITOR OF REMARK 900 PTP1B TARGETINGTHE SECOND PHOSPHOTYROSINE SITE REMARK 900 RELATED ID: 1PTT RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PROTEIN TYROSINE REMARK 900 PHOSPHATASE 1BCOMPLEXED WITH PHOSPHOTYROSINE- REMARK 900 CONTAINING TETRA-PEPTIDE(AC-DEPYL-NH2) REMARK 900 RELATED ID: 1PTU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PROTEIN TYROSINE REMARK 900 PHOSPHATASE 1BCOMPLEXED WITH PHOSPHOTYROSINE- REMARK 900 CONTAINING HEXA-PEPTIDE(DADEPYL-NH2) REMARK 900 RELATED ID: 1PTV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PROTEIN TYROSINE REMARK 900 PHOSPHATASE 1BCOMPLEXED WITH PHOSPHOTYROSINE REMARK 900 RELATED ID: 1PTY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PROTEIN TYROSINE REMARK 900 PHOSPHATASE 1BCOMPLEXED WITH TWO PHOSPHOTYROSINE REMARK 900 MOLECULES REMARK 900 RELATED ID: 1PXH RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PROTEIN TYROSINE REMARK 900 PHOSPHATASE 1B WITHPOTENT AND SELECTIVE REMARK 900 BIDENTATE INHIBITOR COMPOUND 2 REMARK 900 RELATED ID: 1PYN RELATED DB: PDB REMARK 900 DUAL-SITE POTENT, SELECTIVE PROTEIN TYROSINE REMARK 900 PHOSPHATASE 1BINHIBITOR USING A LINKED REMARK 900 FRAGMENT STRATEGY AND A MALONATEHEAD ON THE REMARK 900 FIRST SITE REMARK 900 RELATED ID: 1Q1M RELATED DB: PDB REMARK 900 A HIGHLY EFFICIENT APPROACH TO A SELECTIVE REMARK 900 AND CELL ACTIVEPTP1B INHIBITORS REMARK 900 RELATED ID: 1Q6J RELATED DB: PDB REMARK 900 THE STRUCTURE OF PHOSPHOTYROSINE PHOSPHATASE REMARK 900 1B IN COMPLEXWITH COMPOUND 2 REMARK 900 RELATED ID: 1Q6M RELATED DB: PDB REMARK 900 THE STRUCTURE OF PHOSPHOTYROSINE PHOSPHATASE REMARK 900 1B IN COMPLEXWITH COMPOUND 3 REMARK 900 RELATED ID: 1Q6N RELATED DB: PDB REMARK 900 THE STRUCTURE OF PHOSPHOTYROSINE PHOSPHATASE REMARK 900 1B IN COMPLEXWITH COMPOUND 4 REMARK 900 RELATED ID: 1Q6P RELATED DB: PDB REMARK 900 THE STRUCTURE OF PHOSPHOTYROSINE PHOSPHATASE REMARK 900 1B IN COMPLEXWITH COMPOUND 6 REMARK 900 RELATED ID: 1Q6S RELATED DB: PDB REMARK 900 THE STRUCTURE OF PHOSPHOTYROSINE PHOSPHATASE REMARK 900 1B IN COMPLEXWITH COMPOUND 9 REMARK 900 RELATED ID: 1Q6T RELATED DB: PDB REMARK 900 THE STRUCTURE OF PHOSPHOTYROSINE PHOSPHATASE REMARK 900 1B IN COMPLEXWITH COMPOUND 11 REMARK 900 RELATED ID: 1QXK RELATED DB: PDB REMARK 900 MONOACID-BASED, CELL PERMEABLE, SELECTIVE REMARK 900 INHIBITORS OFPROTEIN TYROSINE PHOSPHATASE 1B REMARK 900 RELATED ID: 1SUG RELATED DB: PDB REMARK 900 1.95 A STRUCTURE OF APO PROTEIN TYROSINE REMARK 900 PHOSPHATASE 1B REMARK 900 RELATED ID: 1T48 RELATED DB: PDB REMARK 900 ALLOSTERIC INHIBITION OF PROTEIN TYROSINE REMARK 900 PHOSPHATASE 1B REMARK 900 RELATED ID: 1T49 RELATED DB: PDB REMARK 900 ALLOSTERIC INHIBITION OF PROTEIN TYROSINE REMARK 900 PHOSPHATASE 1B REMARK 900 RELATED ID: 1T4J RELATED DB: PDB REMARK 900 ALLOSTERIC INHIBITION OF PROTEIN TYROSINE REMARK 900 PHOSPHATASE 1B REMARK 900 RELATED ID: 1WAX RELATED DB: PDB REMARK 900 PROTEIN TYROSINE PHOSPHATASE 1B WITH ACTIVE REMARK 900 SITE INHIBITOR REMARK 900 RELATED ID: 1XBO RELATED DB: PDB REMARK 900 PTP1B COMPLEXED WITH ISOXAZOLE CARBOXYLIC ACID REMARK 900 RELATED ID: 2BGD RELATED DB: PDB REMARK 900 STRUCTURE-BASED DESIGN OF PROTEIN TYROSINE REMARK 900 PHOSPHATASE-1B INHIBITORS DBREF 2BGE A 1 321 UNP P18031 PTN1_HUMAN 1 321 SEQRES 1 A 321 MET GLU MET GLU LYS GLU PHE GLU GLN ILE ASP LYS SER SEQRES 2 A 321 GLY SER TRP ALA ALA ILE TYR GLN ASP ILE ARG HIS GLU SEQRES 3 A 321 ALA SER ASP PHE PRO CYS ARG VAL ALA LYS LEU PRO LYS SEQRES 4 A 321 ASN LYS ASN ARG ASN ARG TYR ARG ASP VAL SER PRO PHE SEQRES 5 A 321 ASP HIS SER ARG ILE LYS LEU HIS GLN GLU ASP ASN ASP SEQRES 6 A 321 TYR ILE ASN ALA SER LEU ILE LYS MET GLU GLU ALA GLN SEQRES 7 A 321 ARG SER TYR ILE LEU THR GLN GLY PRO LEU PRO ASN THR SEQRES 8 A 321 CYS GLY HIS PHE TRP GLU MET VAL TRP GLU GLN LYS SER SEQRES 9 A 321 ARG GLY VAL VAL MET LEU ASN ARG VAL MET GLU LYS GLY SEQRES 10 A 321 SER LEU LYS CYS ALA GLN TYR TRP PRO GLN LYS GLU GLU SEQRES 11 A 321 LYS GLU MET ILE PHE GLU ASP THR ASN LEU LYS LEU THR SEQRES 12 A 321 LEU ILE SER GLU ASP ILE LYS SER TYR TYR THR VAL ARG SEQRES 13 A 321 GLN LEU GLU LEU GLU ASN LEU THR THR GLN GLU THR ARG SEQRES 14 A 321 GLU ILE LEU HIS PHE HIS TYR THR THR TRP PRO ASP PHE SEQRES 15 A 321 GLY VAL PRO GLU SER PRO ALA SER PHE LEU ASN PHE LEU SEQRES 16 A 321 PHE LYS VAL ARG GLU SER GLY SER LEU SER PRO GLU HIS SEQRES 17 A 321 GLY PRO VAL VAL VAL HIS CYS SER ALA GLY ILE GLY ARG SEQRES 18 A 321 SER GLY THR PHE CYS LEU ALA ASP THR CYS LEU LEU LEU SEQRES 19 A 321 MET ASP LYS ARG LYS ASP PRO SER SER VAL ASP ILE LYS SEQRES 20 A 321 LYS VAL LEU LEU GLU MET ARG LYS PHE ARG MET GLY LEU SEQRES 21 A 321 ILE GLN THR ALA ASP GLN LEU ARG PHE SER TYR LEU ALA SEQRES 22 A 321 VAL ILE GLU GLY ALA LYS PHE ILE MET GLY ASP SER SER SEQRES 23 A 321 VAL GLN ASP GLN TRP LYS GLU LEU SER HIS GLU ASP LEU SEQRES 24 A 321 GLU PRO PRO PRO GLU HIS ILE PRO PRO PRO PRO ARG PRO SEQRES 25 A 321 PRO LYS ARG ILE LEU GLU PRO HIS ASN HET T2D A1298 14 HETNAM T2D 1,2,5-THIADIAZOLIDIN-3-ONE-1,1-DIOXIDE HETSYN T2D INHIBITOR OF PROTEIN-TYROSINE PHOSPHATASE 1B FORMUL 2 T2D C8 H8 N2 O3 S FORMUL 3 HOH *377(H2 O) HELIX 1 1 MET A 1 GLY A 14 1 14 HELIX 2 2 SER A 15 ALA A 27 1 13 HELIX 3 3 LEU A 37 ASN A 44 5 8 HELIX 4 4 THR A 91 GLN A 102 1 12 HELIX 5 5 SER A 187 SER A 201 1 15 HELIX 6 6 GLY A 220 LYS A 239 1 20 HELIX 7 7 ASP A 240 VAL A 244 5 5 HELIX 8 8 ASP A 245 ARG A 254 1 10 HELIX 9 9 THR A 263 MET A 282 1 20 HELIX 10 10 SER A 286 SER A 295 1 10 SHEET 1 AA 8 ALA A 69 MET A 74 0 SHEET 2 AA 8 ARG A 79 THR A 84 -1 O ARG A 79 N MET A 74 SHEET 3 AA 8 VAL A 211 HIS A 214 1 O VAL A 211 N ILE A 82 SHEET 4 AA 8 GLY A 106 MET A 109 1 O GLY A 106 N VAL A 212 SHEET 5 AA 8 GLU A 167 TYR A 176 1 O LEU A 172 N VAL A 107 SHEET 6 AA 8 TYR A 153 ASN A 162 -1 O THR A 154 N HIS A 175 SHEET 7 AA 8 LEU A 140 ILE A 149 -1 O LYS A 141 N GLU A 161 SHEET 8 AA 8 MET A 133 PHE A 135 -1 O MET A 133 N LEU A 142 SHEET 1 AB 2 MET A 114 GLU A 115 0 SHEET 2 AB 2 SER A 118 LEU A 119 -1 O SER A 118 N GLU A 115 SITE 1 AC1 12 TYR A 46 ASP A 181 PHE A 182 CYS A 215 SITE 2 AC1 12 SER A 216 ALA A 217 GLY A 218 ILE A 219 SITE 3 AC1 12 GLY A 220 ARG A 221 GLN A 262 GLN A 266 CRYST1 89.012 89.012 104.710 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011234 0.006486 0.000000 0.00000 SCALE2 0.000000 0.012972 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009550 0.00000