HEADER TRANSFERASE 22-DEC-04 2BGH TITLE CRYSTAL STRUCTURE OF VINORINE SYNTHASE CAVEAT 2BGH ASN A 84 C-ALPHA IS PLANAR COMPND MOL_ID: 1; COMPND 2 MOLECULE: VINORINE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.3.1.160; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RAUVOLFIA SERPENTINA; SOURCE 3 ORGANISM_COMMON: SERPENTWOOD; SOURCE 4 ORGANISM_TAXID: 4060; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 1007065; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: M15; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PQE2 KEYWDS VS, BAHD, ACETYLTRANSFERASE, AUTO-RICKSHAW, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR X.MA,J.KOEPKE,S.PANJIKAR,G.FRITZSCH,J.STOECKIGT REVDAT 7 06-NOV-24 2BGH 1 REMARK REVDAT 6 24-JUL-19 2BGH 1 REMARK REVDAT 5 15-APR-15 2BGH 1 SOURCE JRNL REMARK REVDAT 4 13-JUL-11 2BGH 1 VERSN REVDAT 3 24-FEB-09 2BGH 1 VERSN REVDAT 2 04-APR-05 2BGH 1 AUTHOR JRNL REVDAT 1 24-JAN-05 2BGH 0 JRNL AUTH X.MA,J.KOEPKE,S.PANJIKAR,G.FRITZSCH,J.STOCKIGT JRNL TITL CRYSTAL STRUCTURE OF VINORINE SYNTHASE, THE FIRST JRNL TITL 2 REPRESENTATIVE OF THE BAHD SUPERFAMILY. JRNL REF J.BIOL.CHEM. V. 280 13576 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 15665331 JRNL DOI 10.1074/JBC.M414508200 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 30713 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2197 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3060 REMARK 3 BIN FREE R VALUE SET COUNT : 63 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6465 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 143 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 76.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.90000 REMARK 3 B22 (A**2) : 2.15000 REMARK 3 B33 (A**2) : -4.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.695 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.334 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.274 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 26.165 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6631 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9031 ; 1.594 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 821 ; 6.617 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 290 ;37.646 ;24.897 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1110 ;20.222 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;21.792 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1029 ; 0.136 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5016 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2992 ; 0.230 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4430 ; 0.314 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 243 ; 0.163 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 54 ; 0.206 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 1 ; 0.228 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4257 ; 0.625 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6724 ; 1.170 ; 2.500 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2682 ; 3.168 ; 5.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2307 ; 4.770 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 9 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 4 A 20 2 REMARK 3 1 B 4 B 20 2 REMARK 3 2 A 23 A 49 2 REMARK 3 2 B 23 B 49 2 REMARK 3 3 A 60 A 108 2 REMARK 3 3 B 60 B 108 2 REMARK 3 4 A 111 A 182 2 REMARK 3 4 B 111 B 182 2 REMARK 3 5 A 203 A 221 2 REMARK 3 5 B 203 B 221 2 REMARK 3 6 A 240 A 260 2 REMARK 3 6 B 240 B 260 2 REMARK 3 7 A 286 A 298 2 REMARK 3 7 B 286 B 298 2 REMARK 3 8 A 358 A 386 2 REMARK 3 8 B 358 B 386 2 REMARK 3 9 A 393 A 416 2 REMARK 3 9 B 393 B 416 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 1080 ; 0.05 ; 0.05 REMARK 3 MEDIUM POSITIONAL 1 A (A): 1030 ; 0.37 ; 0.50 REMARK 3 TIGHT THERMAL 1 A (A**2): 1080 ; 0.47 ; 1.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1030 ; 1.20 ; 2.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 216 REMARK 3 ORIGIN FOR THE GROUP (A): 18.8200 23.4600 19.1500 REMARK 3 T TENSOR REMARK 3 T11: -0.4716 T22: -0.3456 REMARK 3 T33: -0.2155 T12: 0.0778 REMARK 3 T13: -0.0357 T23: 0.0453 REMARK 3 L TENSOR REMARK 3 L11: 2.7795 L22: 3.8452 REMARK 3 L33: 5.7658 L12: 0.7907 REMARK 3 L13: -0.1238 L23: 0.0136 REMARK 3 S TENSOR REMARK 3 S11: -0.0122 S12: -0.1299 S13: -0.0286 REMARK 3 S21: 0.2882 S22: -0.0260 S23: -0.1904 REMARK 3 S31: -0.2410 S32: -0.0079 S33: 0.0382 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 218 A 421 REMARK 3 ORIGIN FOR THE GROUP (A): 17.6300 22.0600 -4.0600 REMARK 3 T TENSOR REMARK 3 T11: -0.3464 T22: -0.0314 REMARK 3 T33: -0.0906 T12: -0.0206 REMARK 3 T13: 0.0112 T23: 0.0405 REMARK 3 L TENSOR REMARK 3 L11: 3.1864 L22: 1.0321 REMARK 3 L33: 5.0957 L12: 0.5875 REMARK 3 L13: -1.6355 L23: -0.8401 REMARK 3 S TENSOR REMARK 3 S11: -0.3569 S12: 0.8736 S13: -0.2190 REMARK 3 S21: -0.4690 S22: 0.2538 S23: -0.0275 REMARK 3 S31: 0.1015 S32: -0.5003 S33: 0.1032 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 216 REMARK 3 ORIGIN FOR THE GROUP (A): 18.8200 23.4600 19.1500 REMARK 3 T TENSOR REMARK 3 T11: -0.0229 T22: -0.0079 REMARK 3 T33: -0.0507 T12: -0.0079 REMARK 3 T13: -0.1278 T23: -0.0529 REMARK 3 L TENSOR REMARK 3 L11: 0.8754 L22: 3.6241 REMARK 3 L33: 9.5756 L12: -0.8384 REMARK 3 L13: 0.1517 L23: -1.8617 REMARK 3 S TENSOR REMARK 3 S11: 0.0645 S12: 0.3926 S13: -0.0811 REMARK 3 S21: -0.9861 S22: -0.1615 S23: 0.2333 REMARK 3 S31: 0.1369 S32: -0.6633 S33: 0.0970 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 218 B 421 REMARK 3 ORIGIN FOR THE GROUP (A): 21.0400 20.6300 70.6300 REMARK 3 T TENSOR REMARK 3 T11: 0.7343 T22: -0.0860 REMARK 3 T33: -0.0215 T12: 0.3548 REMARK 3 T13: -0.0637 T23: -0.0540 REMARK 3 L TENSOR REMARK 3 L11: 3.2816 L22: 1.8051 REMARK 3 L33: 8.5590 L12: -0.6999 REMARK 3 L13: -0.5774 L23: -1.2528 REMARK 3 S TENSOR REMARK 3 S11: -0.6819 S12: -0.6680 S13: -0.2738 REMARK 3 S21: 1.4123 S22: 0.3153 S23: 0.1083 REMARK 3 S31: -0.9771 S32: 0.0689 S33: 0.3666 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2BGH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-DEC-04. REMARK 100 THE DEPOSITION ID IS D_1290022123. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-FEB-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9714 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31740 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.03000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.03000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 29.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: AUTO-RICKSHAW, SHELXD, MLPHARE, DM REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 0.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL PH 8.7, 2M AMMONIUM REMARK 280 SULPHATE, 2% PEG 400, PH 6.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.35750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.48300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.22750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.48300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.35750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.22750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 PRO A 3 REMARK 465 SER A 235 REMARK 465 ALA A 236 REMARK 465 SER A 237 REMARK 465 GLU A 238 REMARK 465 GLU A 239 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 PRO B 3 REMARK 465 SER B 235 REMARK 465 ALA B 236 REMARK 465 SER B 237 REMARK 465 GLU B 238 REMARK 465 GLU B 239 REMARK 465 LYS B 240 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP B 326 CG OD1 OD2 REMARK 470 ASP B 327 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD2 HIS A 160 O HOH A 2043 1.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASN B 53 CG ASN B 53 OD1 0.174 REMARK 500 ASN B 53 CG ASN B 53 ND2 0.233 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 84 N - CA - C ANGL. DEV. = 16.2 DEGREES REMARK 500 LEU A 383 CA - CB - CG ANGL. DEV. = 18.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 24 111.10 80.15 REMARK 500 ASN A 84 -18.62 52.78 REMARK 500 ASN A 111 63.22 -153.66 REMARK 500 LYS A 117 -5.32 -59.97 REMARK 500 ASN A 213 38.68 -96.59 REMARK 500 ALA A 233 21.50 -76.46 REMARK 500 LYS A 267 -109.56 -115.03 REMARK 500 ASN A 268 -140.71 -78.16 REMARK 500 TRP A 306 -74.09 -53.53 REMARK 500 ASP A 307 70.98 39.17 REMARK 500 LYS A 308 -153.80 -127.62 REMARK 500 GLU A 341 30.07 -96.83 REMARK 500 GLN B 21 -20.27 -32.38 REMARK 500 LYS B 24 112.51 78.68 REMARK 500 ASP B 51 -75.69 -125.10 REMARK 500 ASN B 84 -9.58 56.49 REMARK 500 ASN B 111 76.81 -150.42 REMARK 500 LYS B 117 2.63 -66.98 REMARK 500 THR B 183 -84.53 -72.37 REMARK 500 ASN B 213 40.03 -90.56 REMARK 500 ALA B 231 -4.41 -59.06 REMARK 500 LYS B 267 -84.86 -75.47 REMARK 500 ASN B 268 -145.03 -124.12 REMARK 500 LYS B 269 158.12 -35.35 REMARK 500 SER B 280 0.25 -65.90 REMARK 500 ASP B 303 -167.84 -78.09 REMARK 500 TRP B 306 -62.34 -105.26 REMARK 500 GLU B 325 42.44 -79.49 REMARK 500 LEU B 339 -63.11 -136.24 REMARK 500 TRP B 365 28.77 -140.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 22 LEU A 23 -147.79 REMARK 500 VAL A 83 ASN A 84 -147.50 REMARK 500 REMARK 500 REMARK: NULL DBREF 2BGH A 1 421 UNP Q70PR7 Q70PR7 1 421 DBREF 2BGH B 1 421 UNP Q70PR7 Q70PR7 1 421 SEQADV 2BGH VAL A 200 UNP Q70PR7 ALA 200 CONFLICT SEQADV 2BGH VAL B 200 UNP Q70PR7 ALA 200 CONFLICT SEQRES 1 A 421 MET ALA PRO GLN MET GLU LYS VAL SER GLU GLU LEU ILE SEQRES 2 A 421 LEU PRO SER SER PRO THR PRO GLN SER LEU LYS CYS TYR SEQRES 3 A 421 LYS ILE SER HIS LEU ASP GLN LEU LEU LEU THR CYS HIS SEQRES 4 A 421 ILE PRO PHE ILE LEU PHE TYR PRO ASN PRO LEU ASP SER SEQRES 5 A 421 ASN LEU ASP PRO ALA GLN THR SER GLN HIS LEU LYS GLN SEQRES 6 A 421 SER LEU SER LYS VAL LEU THR HIS PHE TYR PRO LEU ALA SEQRES 7 A 421 GLY ARG ILE ASN VAL ASN SER SER VAL ASP CYS ASN ASP SEQRES 8 A 421 SER GLY VAL PRO PHE VAL GLU ALA ARG VAL GLN ALA GLN SEQRES 9 A 421 LEU SER GLN ALA ILE GLN ASN VAL VAL GLU LEU GLU LYS SEQRES 10 A 421 LEU ASP GLN TYR LEU PRO SER ALA ALA TYR PRO GLY GLY SEQRES 11 A 421 LYS ILE GLU VAL ASN GLU ASP VAL PRO LEU ALA VAL LYS SEQRES 12 A 421 ILE SER PHE PHE GLU CYS GLY GLY THR ALA ILE GLY VAL SEQRES 13 A 421 ASN LEU SER HIS LYS ILE ALA ASP VAL LEU SER LEU ALA SEQRES 14 A 421 THR PHE LEU ASN ALA TRP THR ALA THR CYS ARG GLY GLU SEQRES 15 A 421 THR GLU ILE VAL LEU PRO ASN PHE ASP LEU ALA ALA ARG SEQRES 16 A 421 HIS PHE PRO PRO VAL ASP ASN THR PRO SER PRO GLU LEU SEQRES 17 A 421 VAL PRO ASP GLU ASN VAL VAL MET LYS ARG PHE VAL PHE SEQRES 18 A 421 ASP LYS GLU LYS ILE GLY ALA LEU ARG ALA GLN ALA SER SEQRES 19 A 421 SER ALA SER GLU GLU LYS ASN PHE SER ARG VAL GLN LEU SEQRES 20 A 421 VAL VAL ALA TYR ILE TRP LYS HIS VAL ILE ASP VAL THR SEQRES 21 A 421 ARG ALA LYS TYR GLY ALA LYS ASN LYS PHE VAL VAL VAL SEQRES 22 A 421 GLN ALA VAL ASN LEU ARG SER ARG MET ASN PRO PRO LEU SEQRES 23 A 421 PRO HIS TYR ALA MET GLY ASN ILE ALA THR LEU LEU PHE SEQRES 24 A 421 ALA ALA VAL ASP ALA GLU TRP ASP LYS ASP PHE PRO ASP SEQRES 25 A 421 LEU ILE GLY PRO LEU ARG THR SER LEU GLU LYS THR GLU SEQRES 26 A 421 ASP ASP HIS ASN HIS GLU LEU LEU LYS GLY MET THR CYS SEQRES 27 A 421 LEU TYR GLU LEU GLU PRO GLN GLU LEU LEU SER PHE THR SEQRES 28 A 421 SER TRP CYS ARG LEU GLY PHE TYR ASP LEU ASP PHE GLY SEQRES 29 A 421 TRP GLY LYS PRO LEU SER ALA CYS THR THR THR PHE PRO SEQRES 30 A 421 LYS ARG ASN ALA ALA LEU LEU MET ASP THR ARG SER GLY SEQRES 31 A 421 ASP GLY VAL GLU ALA TRP LEU PRO MET ALA GLU ASP GLU SEQRES 32 A 421 MET ALA MET LEU PRO VAL GLU LEU LEU SER LEU VAL ASP SEQRES 33 A 421 SER ASP PHE SER LYS SEQRES 1 B 421 MET ALA PRO GLN MET GLU LYS VAL SER GLU GLU LEU ILE SEQRES 2 B 421 LEU PRO SER SER PRO THR PRO GLN SER LEU LYS CYS TYR SEQRES 3 B 421 LYS ILE SER HIS LEU ASP GLN LEU LEU LEU THR CYS HIS SEQRES 4 B 421 ILE PRO PHE ILE LEU PHE TYR PRO ASN PRO LEU ASP SER SEQRES 5 B 421 ASN LEU ASP PRO ALA GLN THR SER GLN HIS LEU LYS GLN SEQRES 6 B 421 SER LEU SER LYS VAL LEU THR HIS PHE TYR PRO LEU ALA SEQRES 7 B 421 GLY ARG ILE ASN VAL ASN SER SER VAL ASP CYS ASN ASP SEQRES 8 B 421 SER GLY VAL PRO PHE VAL GLU ALA ARG VAL GLN ALA GLN SEQRES 9 B 421 LEU SER GLN ALA ILE GLN ASN VAL VAL GLU LEU GLU LYS SEQRES 10 B 421 LEU ASP GLN TYR LEU PRO SER ALA ALA TYR PRO GLY GLY SEQRES 11 B 421 LYS ILE GLU VAL ASN GLU ASP VAL PRO LEU ALA VAL LYS SEQRES 12 B 421 ILE SER PHE PHE GLU CYS GLY GLY THR ALA ILE GLY VAL SEQRES 13 B 421 ASN LEU SER HIS LYS ILE ALA ASP VAL LEU SER LEU ALA SEQRES 14 B 421 THR PHE LEU ASN ALA TRP THR ALA THR CYS ARG GLY GLU SEQRES 15 B 421 THR GLU ILE VAL LEU PRO ASN PHE ASP LEU ALA ALA ARG SEQRES 16 B 421 HIS PHE PRO PRO VAL ASP ASN THR PRO SER PRO GLU LEU SEQRES 17 B 421 VAL PRO ASP GLU ASN VAL VAL MET LYS ARG PHE VAL PHE SEQRES 18 B 421 ASP LYS GLU LYS ILE GLY ALA LEU ARG ALA GLN ALA SER SEQRES 19 B 421 SER ALA SER GLU GLU LYS ASN PHE SER ARG VAL GLN LEU SEQRES 20 B 421 VAL VAL ALA TYR ILE TRP LYS HIS VAL ILE ASP VAL THR SEQRES 21 B 421 ARG ALA LYS TYR GLY ALA LYS ASN LYS PHE VAL VAL VAL SEQRES 22 B 421 GLN ALA VAL ASN LEU ARG SER ARG MET ASN PRO PRO LEU SEQRES 23 B 421 PRO HIS TYR ALA MET GLY ASN ILE ALA THR LEU LEU PHE SEQRES 24 B 421 ALA ALA VAL ASP ALA GLU TRP ASP LYS ASP PHE PRO ASP SEQRES 25 B 421 LEU ILE GLY PRO LEU ARG THR SER LEU GLU LYS THR GLU SEQRES 26 B 421 ASP ASP HIS ASN HIS GLU LEU LEU LYS GLY MET THR CYS SEQRES 27 B 421 LEU TYR GLU LEU GLU PRO GLN GLU LEU LEU SER PHE THR SEQRES 28 B 421 SER TRP CYS ARG LEU GLY PHE TYR ASP LEU ASP PHE GLY SEQRES 29 B 421 TRP GLY LYS PRO LEU SER ALA CYS THR THR THR PHE PRO SEQRES 30 B 421 LYS ARG ASN ALA ALA LEU LEU MET ASP THR ARG SER GLY SEQRES 31 B 421 ASP GLY VAL GLU ALA TRP LEU PRO MET ALA GLU ASP GLU SEQRES 32 B 421 MET ALA MET LEU PRO VAL GLU LEU LEU SER LEU VAL ASP SEQRES 33 B 421 SER ASP PHE SER LYS FORMUL 3 HOH *143(H2 O) HELIX 1 1 SER A 29 LEU A 34 1 6 HELIX 2 2 ASP A 55 LEU A 71 1 17 HELIX 3 3 PHE A 74 GLY A 79 5 6 HELIX 4 4 GLN A 104 GLN A 110 1 7 HELIX 5 5 GLU A 114 LEU A 122 5 9 HELIX 6 6 ASP A 164 ARG A 180 1 17 HELIX 7 7 ASP A 191 PHE A 197 1 7 HELIX 8 8 ASP A 222 ALA A 233 1 12 HELIX 9 9 SER A 243 TYR A 264 1 22 HELIX 10 10 ARG A 279 MET A 282 5 4 HELIX 11 11 ASP A 309 ASP A 312 5 4 HELIX 12 12 LEU A 313 LEU A 321 1 9 HELIX 13 13 ASP A 327 GLU A 341 1 15 HELIX 14 14 GLU A 343 GLN A 345 5 3 HELIX 15 15 GLY A 357 LEU A 361 5 5 HELIX 16 16 GLU A 401 LEU A 407 1 7 HELIX 17 17 PRO A 408 SER A 413 1 6 HELIX 18 18 SER B 29 LEU B 35 1 7 HELIX 19 19 ASP B 55 LEU B 71 1 17 HELIX 20 20 PHE B 74 GLY B 79 5 6 HELIX 21 21 GLN B 104 GLN B 110 1 7 HELIX 22 22 GLU B 114 LEU B 122 5 9 HELIX 23 23 ASP B 164 ARG B 180 1 17 HELIX 24 24 ASP B 191 PHE B 197 1 7 HELIX 25 25 ASP B 222 ALA B 231 1 10 HELIX 26 26 SER B 243 TYR B 264 1 22 HELIX 27 27 ARG B 279 MET B 282 5 4 HELIX 28 28 ASP B 309 ASP B 312 5 4 HELIX 29 29 LEU B 313 GLU B 322 1 10 HELIX 30 30 ASP B 327 CYS B 338 1 12 HELIX 31 31 GLU B 343 GLN B 345 5 3 HELIX 32 32 GLY B 357 LEU B 361 5 5 HELIX 33 33 GLU B 401 ALA B 405 1 5 HELIX 34 34 PRO B 408 SER B 413 1 6 SHEET 1 AA12 SER A 370 CYS A 372 0 SHEET 2 AA12 HIS A 39 TYR A 46 -1 O ILE A 43 N CYS A 372 SHEET 3 AA12 THR A 152 SER A 159 -1 O THR A 152 N TYR A 46 SHEET 4 AA12 LEU A 140 PHE A 146 -1 O ALA A 141 N ASN A 157 SHEET 5 AA12 VAL A 94 VAL A 101 1 O PRO A 95 N VAL A 142 SHEET 6 AA12 MET A 5 LEU A 14 -1 O GLU A 6 N ARG A 100 SHEET 7 AA12 MET B 5 ILE B 13 -1 O GLU B 10 N LEU A 14 SHEET 8 AA12 VAL B 94 VAL B 101 -1 O VAL B 94 N ILE B 13 SHEET 9 AA12 LEU B 140 PHE B 146 1 O VAL B 142 N VAL B 97 SHEET 10 AA12 THR B 152 SER B 159 -1 O ALA B 153 N SER B 145 SHEET 11 AA12 HIS B 39 TYR B 46 -1 O ILE B 40 N LEU B 158 SHEET 12 AA12 SER B 370 CYS B 372 -1 O SER B 370 N PHE B 45 SHEET 1 AB 2 ARG A 80 ASN A 82 0 SHEET 2 AB 2 SER A 86 ASP A 88 -1 O SER A 86 N ASN A 82 SHEET 1 AC 6 VAL A 214 PHE A 221 0 SHEET 2 AC 6 VAL A 393 ALA A 400 -1 O VAL A 393 N PHE A 221 SHEET 3 AC 6 ALA A 381 ASP A 386 -1 O LEU A 383 N TRP A 396 SHEET 4 AC 6 LEU A 347 TRP A 353 1 O SER A 349 N ALA A 382 SHEET 5 AC 6 PHE A 270 ASN A 277 1 O VAL A 271 N LEU A 348 SHEET 6 AC 6 ALA A 295 VAL A 302 -1 O THR A 296 N VAL A 276 SHEET 1 BA 2 ARG B 80 ASN B 82 0 SHEET 2 BA 2 SER B 86 ASP B 88 -1 O SER B 86 N ASN B 82 SHEET 1 BB 6 VAL B 214 PHE B 221 0 SHEET 2 BB 6 VAL B 393 ALA B 400 -1 O VAL B 393 N PHE B 221 SHEET 3 BB 6 ALA B 381 ASP B 386 -1 O LEU B 383 N TRP B 396 SHEET 4 BB 6 LEU B 347 SER B 352 1 O SER B 349 N ALA B 382 SHEET 5 BB 6 PHE B 270 ASN B 277 1 O VAL B 271 N LEU B 348 SHEET 6 BB 6 ALA B 295 VAL B 302 -1 O THR B 296 N VAL B 276 SSBOND 1 CYS A 25 CYS A 89 1555 1555 2.03 SSBOND 2 CYS B 25 CYS B 89 1555 1555 2.03 CISPEP 1 ASN A 283 PRO A 284 0 6.61 CISPEP 2 ASN B 283 PRO B 284 0 4.76 CRYST1 82.715 90.455 136.966 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012090 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011055 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007301 0.00000 MTRIX1 1 -0.993319 0.010800 -0.114897 47.25253 1 MTRIX2 1 0.007566 0.999564 0.028548 -0.57848 1 MTRIX3 1 0.115155 0.027488 -0.992967 64.56186 1