HEADER OXIDOREDUCTASE 08-JAN-05 2BH9 TITLE X-RAY STRUCTURE OF A DELETION VARIANT OF HUMAN GLUCOSE 6-PHOSPHATE TITLE 2 DEHYDROGENASE COMPLEXED WITH STRUCTURAL AND COENZYME NADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 26-514; COMPND 5 SYNONYM: G6PD; COMPND 6 EC: 1.1.1.49; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: DR612; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PKKG6PD KEYWDS OXIDOREDUCTASE, OXIDOREDUCTASE (CHOH(D)-NADP), CARBOHYDRATE KEYWDS 2 METABOLISM, GLUCOSE METABOLISM EXPDTA X-RAY DIFFRACTION AUTHOR S.GOVER,L.VANDEPUTTE-RUTTEN,S.W.N.AU,M.J.ADAMS REVDAT 4 01-MAY-24 2BH9 1 REMARK REVDAT 3 08-MAY-19 2BH9 1 REMARK REVDAT 2 24-FEB-09 2BH9 1 VERSN REVDAT 1 25-APR-05 2BH9 0 JRNL AUTH M.KOTAKA,S.GOVER,L.VANDEPUTTE-RUTTEN,S.W.N.AU,V.M.S.LAM, JRNL AUTH 2 M.J.ADAMS JRNL TITL STRUCTURAL STUDIES OF GLUCOSE-6-PHOSPHATE AND NADP+ BINDING JRNL TITL 2 TO HUMAN GLUCOSE-6-PHOSPHATE DEHYDROGENASE JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 61 495 2005 JRNL REFN ISSN 0907-4449 JRNL PMID 15858258 JRNL DOI 10.1107/S0907444905002350 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.W.N.AU,S.GOVER,V.M.S.LAM,M.J.ADAMS REMARK 1 TITL HUMAN GLUCOSE-6-PHOSPHATE DEHYDROGENASE: THE CRYSTAL REMARK 1 TITL 2 STRUCTURE REVEALS A STRUCTURAL NADP MOLECULE AND PROVIDES REMARK 1 TITL 3 INSIGHTS INTO ENZYME DEFICIENCY REMARK 1 REF STRUCTURE V. 8 293 2000 REMARK 1 REFN ISSN 0969-2126 REMARK 1 PMID 10745013 REMARK 1 DOI 10.1016/S0969-2126(00)00104-0 REMARK 1 REFERENCE 2 REMARK 1 AUTH S.W.N.AU,C.E.NAYLOR,S.GOVER,L.VANDEPUTTE-RUTTEN,D.A.SCOPES, REMARK 1 AUTH 2 P.J.MASON,L.LUZZATTO,V.M.S.LAM,M.J.ADAMS REMARK 1 TITL SOLUTION OF THE STRUCTURE OF TETRAMERIC HUMAN GLUCOSE REMARK 1 TITL 2 6-PHOSPHATE DEHYDROGENASE BY MOLECULAR REPLACEMENT REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 55 826 1999 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 10089300 REMARK 1 DOI 10.1107/S0907444999000827 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 73.0 REMARK 3 NUMBER OF REFLECTIONS : 14548 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.296 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 726 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3971 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 108 REMARK 3 SOLVENT ATOMS : 162 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : NULL ; NULL ; NULL REMARK 3 BOND ANGLES : NULL ; NULL ; NULL REMARK 3 TORSION ANGLES : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS : NULL ; NULL ; NULL REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : NULL ; NULL ; NULL REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : NULL ; NULL ; NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : NULL REMARK 3 OTHER TORSION ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2BH9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-JAN-05. REMARK 100 THE DEPOSITION ID IS D_1290022314. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-OCT-96 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87 REMARK 200 MONOCHROMATOR : SI CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14581 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 29.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -4.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 73.3 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 59.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.31000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PARTIALLY-REFINED MONOMER OF HUMAN G6PD, CANTON REMARK 200 VARIANT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HANGING DROP VAPOUR DIFFUSION. 1-PLUS REMARK 280 -1 MICROLITRE DROPS IN THE WELL 0.1M TRIS-HCL,PH 7.5-8.2, 10-16% REMARK 280 PEG 4000. PROTEIN CONCENTRATION 5MG/ML., PH 8.00, VAPOR REMARK 280 DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: F 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z+1/2 REMARK 290 7555 -X,Y+1/2,-Z+1/2 REMARK 290 8555 X,-Y+1/2,-Z+1/2 REMARK 290 9555 X+1/2,Y,Z+1/2 REMARK 290 10555 -X+1/2,-Y,Z+1/2 REMARK 290 11555 -X+1/2,Y,-Z+1/2 REMARK 290 12555 X+1/2,-Y,-Z+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z REMARK 290 14555 -X+1/2,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y+1/2,-Z REMARK 290 16555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 86.24000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 108.61000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 86.24000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 108.61000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 86.24000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 108.61000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 86.24000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 108.61000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 30.38000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 108.61000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 30.38000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 108.61000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 30.38000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 108.61000 REMARK 290 SMTRY1 12 1.000000 0.000000 0.000000 30.38000 REMARK 290 SMTRY2 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 108.61000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 30.38000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 86.24000 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 30.38000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 86.24000 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 30.38000 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 86.24000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 30.38000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 86.24000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 60.76000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2007 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2010 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2011 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2033 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2042 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2045 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2101 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE HIS 26 VAL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 63 -39.77 -39.40 REMARK 500 ASN A 64 75.64 -104.03 REMARK 500 ARG A 74 72.43 -102.45 REMARK 500 HIS A 129 112.30 -39.89 REMARK 500 ILE A 162 -76.08 -113.04 REMARK 500 ASN A 262 -71.39 -130.07 REMARK 500 GLU A 317 -19.63 -39.62 REMARK 500 LEU A 323 1.10 -68.41 REMARK 500 LEU A 362 -158.47 -74.21 REMARK 500 GLU A 364 166.31 179.42 REMARK 500 GLN A 395 149.04 -179.31 REMARK 500 ASN A 397 75.11 42.82 REMARK 500 SER A 418 -147.85 -143.21 REMARK 500 PRO A 479 172.74 -59.61 REMARK 500 TYR A 484 94.60 -41.60 REMARK 500 SER A 486 -176.65 -59.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 799 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 811 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1516 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1517 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QKI RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF HUMAN GLUCOSE 6- PHOSPHATE DEHYDROGENASE REMARK 900 (VARIANT CANTON R459L) COMPLEXED WITH STRUCTURAL NADP+ REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE G6PD USED IN THIS WORK IS AN ENGINEERED VARIANT IN REMARK 999 WHICH THE 25 N-TERMINAL RESIDUES HAVE BEEN REMOVED AND REMARK 999 THE FIRST RESIDUE IS VALINE, NOT HISTIDINE. DBREF 2BH9 A 27 515 UNP P11413 G6PD_HUMAN 26 514 SEQADV 2BH9 VAL A 27 UNP P11413 HIS 26 ENGINEERED MUTATION SEQRES 1 A 489 VAL GLN SER ASP THR HIS ILE PHE ILE ILE MET GLY ALA SEQRES 2 A 489 SER GLY ASP LEU ALA LYS LYS LYS ILE TYR PRO THR ILE SEQRES 3 A 489 TRP TRP LEU PHE ARG ASP GLY LEU LEU PRO GLU ASN THR SEQRES 4 A 489 PHE ILE VAL GLY TYR ALA ARG SER ARG LEU THR VAL ALA SEQRES 5 A 489 ASP ILE ARG LYS GLN SER GLU PRO PHE PHE LYS ALA THR SEQRES 6 A 489 PRO GLU GLU LYS LEU LYS LEU GLU ASP PHE PHE ALA ARG SEQRES 7 A 489 ASN SER TYR VAL ALA GLY GLN TYR ASP ASP ALA ALA SER SEQRES 8 A 489 TYR GLN ARG LEU ASN SER HIS MET ASN ALA LEU HIS LEU SEQRES 9 A 489 GLY SER GLN ALA ASN ARG LEU PHE TYR LEU ALA LEU PRO SEQRES 10 A 489 PRO THR VAL TYR GLU ALA VAL THR LYS ASN ILE HIS GLU SEQRES 11 A 489 SER CYS MET SER GLN ILE GLY TRP ASN ARG ILE ILE VAL SEQRES 12 A 489 GLU LYS PRO PHE GLY ARG ASP LEU GLN SER SER ASP ARG SEQRES 13 A 489 LEU SER ASN HIS ILE SER SER LEU PHE ARG GLU ASP GLN SEQRES 14 A 489 ILE TYR ARG ILE ASP HIS TYR LEU GLY LYS GLU MET VAL SEQRES 15 A 489 GLN ASN LEU MET VAL LEU ARG PHE ALA ASN ARG ILE PHE SEQRES 16 A 489 GLY PRO ILE TRP ASN ARG ASP ASN ILE ALA CYS VAL ILE SEQRES 17 A 489 LEU THR PHE LYS GLU PRO PHE GLY THR GLU GLY ARG GLY SEQRES 18 A 489 GLY TYR PHE ASP GLU PHE GLY ILE ILE ARG ASP VAL MET SEQRES 19 A 489 GLN ASN HIS LEU LEU GLN MET LEU CYS LEU VAL ALA MET SEQRES 20 A 489 GLU LYS PRO ALA SER THR ASN SER ASP ASP VAL ARG ASP SEQRES 21 A 489 GLU LYS VAL LYS VAL LEU LYS CYS ILE SER GLU VAL GLN SEQRES 22 A 489 ALA ASN ASN VAL VAL LEU GLY GLN TYR VAL GLY ASN PRO SEQRES 23 A 489 ASP GLY GLU GLY GLU ALA THR LYS GLY TYR LEU ASP ASP SEQRES 24 A 489 PRO THR VAL PRO ARG GLY SER THR THR ALA THR PHE ALA SEQRES 25 A 489 ALA VAL VAL LEU TYR VAL GLU ASN GLU ARG TRP ASP GLY SEQRES 26 A 489 VAL PRO PHE ILE LEU ARG CYS GLY LYS ALA LEU ASN GLU SEQRES 27 A 489 ARG LYS ALA GLU VAL ARG LEU GLN PHE HIS ASP VAL ALA SEQRES 28 A 489 GLY ASP ILE PHE HIS GLN GLN CYS LYS ARG ASN GLU LEU SEQRES 29 A 489 VAL ILE ARG VAL GLN PRO ASN GLU ALA VAL TYR THR LYS SEQRES 30 A 489 MET MET THR LYS LYS PRO GLY MET PHE PHE ASN PRO GLU SEQRES 31 A 489 GLU SER GLU LEU ASP LEU THR TYR GLY ASN ARG TYR LYS SEQRES 32 A 489 ASN VAL LYS LEU PRO ASP ALA TYR GLU ARG LEU ILE LEU SEQRES 33 A 489 ASP VAL PHE CYS GLY SER GLN MET HIS PHE VAL ARG SER SEQRES 34 A 489 ASP GLU LEU ARG GLU ALA TRP ARG ILE PHE THR PRO LEU SEQRES 35 A 489 LEU HIS GLN ILE GLU LEU GLU LYS PRO LYS PRO ILE PRO SEQRES 36 A 489 TYR ILE TYR GLY SER ARG GLY PRO THR GLU ALA ASP GLU SEQRES 37 A 489 LEU MET LYS ARG VAL GLY PHE GLN TYR GLU GLY THR TYR SEQRES 38 A 489 LYS TRP VAL ASN PRO HIS LYS LEU HET NAP A 799 48 HET NAP A 811 48 HET GOL A1516 6 HET GOL A1517 6 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM GOL GLYCEROL HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NAP 2(C21 H28 N7 O17 P3) FORMUL 4 GOL 2(C3 H8 O3) FORMUL 6 HOH *162(H2 O) HELIX 1 1 GLY A 41 LYS A 47 1 7 HELIX 2 2 LYS A 47 ASP A 58 1 12 HELIX 3 3 THR A 76 GLU A 85 1 10 HELIX 4 4 PRO A 86 PHE A 88 5 3 HELIX 5 5 THR A 91 GLU A 93 5 3 HELIX 6 6 GLU A 94 ARG A 104 1 11 HELIX 7 7 ASP A 114 ALA A 127 1 14 HELIX 8 8 VAL A 146 CYS A 158 1 13 HELIX 9 9 ASP A 176 SER A 188 1 13 HELIX 10 10 ARG A 192 ASP A 194 5 3 HELIX 11 11 ASP A 200 GLY A 204 5 5 HELIX 12 12 LYS A 205 ALA A 217 1 13 HELIX 13 13 ASN A 218 GLY A 222 5 5 HELIX 14 14 ARG A 246 ASP A 251 1 6 HELIX 15 15 PHE A 253 VAL A 259 1 7 HELIX 16 16 ASN A 262 MET A 273 1 12 HELIX 17 17 ASN A 280 LYS A 293 1 14 HELIX 18 18 GLN A 299 ASN A 301 5 3 HELIX 19 19 GLY A 321 ASP A 325 5 5 HELIX 20 20 ASP A 435 GLY A 447 1 13 HELIX 21 21 ARG A 454 LYS A 476 1 23 HELIX 22 22 PRO A 489 VAL A 499 1 11 SHEET 1 AA 6 ASN A 105 ALA A 109 0 SHEET 2 AA 6 THR A 65 ALA A 71 1 O ILE A 67 N SER A 106 SHEET 3 AA 6 HIS A 32 MET A 37 1 O HIS A 32 N PHE A 66 SHEET 4 AA 6 ASN A 135 LEU A 140 1 O ASN A 135 N ILE A 33 SHEET 5 AA 6 ASN A 165 VAL A 169 1 O ARG A 166 N PHE A 138 SHEET 6 AA 6 ILE A 196 ARG A 198 1 O TYR A 197 N VAL A 169 SHEET 1 AB 9 PRO A 415 THR A 423 0 SHEET 2 AB 9 ALA A 399 LYS A 407 -1 O VAL A 400 N LEU A 422 SHEET 3 AB 9 GLU A 389 GLN A 395 -1 O GLU A 389 N LYS A 403 SHEET 4 AB 9 LYS A 366 PHE A 373 -1 O ALA A 367 N GLN A 395 SHEET 5 AB 9 ILE A 230 LYS A 238 -1 N ALA A 231 O GLN A 372 SHEET 6 AB 9 PRO A 353 GLY A 359 1 O PRO A 353 N VAL A 233 SHEET 7 AB 9 PHE A 337 TYR A 343 -1 O ALA A 338 N CYS A 358 SHEET 8 AB 9 VAL A 303 VAL A 309 -1 O VAL A 304 N ALA A 339 SHEET 9 AB 9 ILE A 480 ILE A 483 1 O ILE A 480 N GLN A 307 CISPEP 1 LYS A 171 PRO A 172 0 8.08 CISPEP 2 GLN A 395 PRO A 396 0 1.01 SITE 1 AC1 18 GLY A 38 SER A 40 GLY A 41 ASP A 42 SITE 2 AC1 18 LEU A 43 ARG A 72 SER A 73 GLN A 111 SITE 3 AC1 18 TYR A 112 ASP A 114 ALA A 141 LEU A 142 SITE 4 AC1 18 PRO A 143 TYR A 147 GLU A 170 LYS A 171 SITE 5 AC1 18 HOH A2154 HOH A2155 SITE 1 AC2 18 LYS A 238 LYS A 366 ARG A 370 ARG A 393 SITE 2 AC2 18 TYR A 401 LYS A 403 ASP A 421 THR A 423 SITE 3 AC2 18 ARG A 487 ASP A 493 PHE A 501 TYR A 503 SITE 4 AC2 18 TYR A 507 TRP A 509 HOH A2152 HOH A2157 SITE 5 AC2 18 HOH A2159 HOH A2161 SITE 1 AC3 4 GLY A 248 TYR A 249 GLU A 252 THR A 327 SITE 1 AC4 4 PRO A 467 GLN A 471 LEU A 474 HOH A2162 CRYST1 60.760 172.480 217.220 90.00 90.00 90.00 F 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016458 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005798 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004604 0.00000 CONECT 3973 3974 3975 3976 3995 CONECT 3974 3973 CONECT 3975 3973 CONECT 3976 3973 3977 CONECT 3977 3976 3978 CONECT 3978 3977 3979 3980 CONECT 3979 3978 3984 CONECT 3980 3978 3981 3982 CONECT 3981 3980 CONECT 3982 3980 3983 3984 CONECT 3983 3982 4017 CONECT 3984 3979 3982 3985 CONECT 3985 3984 3986 3994 CONECT 3986 3985 3987 CONECT 3987 3986 3988 CONECT 3988 3987 3989 3994 CONECT 3989 3988 3990 3991 CONECT 3990 3989 CONECT 3991 3989 3992 CONECT 3992 3991 3993 CONECT 3993 3992 3994 CONECT 3994 3985 3988 3993 CONECT 3995 3973 3996 CONECT 3996 3995 3997 3998 3999 CONECT 3997 3996 CONECT 3998 3996 CONECT 3999 3996 4000 CONECT 4000 3999 4001 CONECT 4001 4000 4002 4003 CONECT 4002 4001 4007 CONECT 4003 4001 4004 4005 CONECT 4004 4003 CONECT 4005 4003 4006 4007 CONECT 4006 4005 CONECT 4007 4002 4005 4008 CONECT 4008 4007 4009 4016 CONECT 4009 4008 4010 CONECT 4010 4009 4011 4014 CONECT 4011 4010 4012 4013 CONECT 4012 4011 CONECT 4013 4011 CONECT 4014 4010 4015 CONECT 4015 4014 4016 CONECT 4016 4008 4015 CONECT 4017 3983 4018 4019 4020 CONECT 4018 4017 CONECT 4019 4017 CONECT 4020 4017 CONECT 4021 4022 4023 4024 4043 CONECT 4022 4021 CONECT 4023 4021 CONECT 4024 4021 4025 CONECT 4025 4024 4026 CONECT 4026 4025 4027 4028 CONECT 4027 4026 4032 CONECT 4028 4026 4029 4030 CONECT 4029 4028 CONECT 4030 4028 4031 4032 CONECT 4031 4030 4065 CONECT 4032 4027 4030 4033 CONECT 4033 4032 4034 4042 CONECT 4034 4033 4035 CONECT 4035 4034 4036 CONECT 4036 4035 4037 4042 CONECT 4037 4036 4038 4039 CONECT 4038 4037 CONECT 4039 4037 4040 CONECT 4040 4039 4041 CONECT 4041 4040 4042 CONECT 4042 4033 4036 4041 CONECT 4043 4021 4044 CONECT 4044 4043 4045 4046 4047 CONECT 4045 4044 CONECT 4046 4044 CONECT 4047 4044 4048 CONECT 4048 4047 4049 CONECT 4049 4048 4050 4051 CONECT 4050 4049 4055 CONECT 4051 4049 4052 4053 CONECT 4052 4051 CONECT 4053 4051 4054 4055 CONECT 4054 4053 CONECT 4055 4050 4053 4056 CONECT 4056 4055 4057 4064 CONECT 4057 4056 4058 CONECT 4058 4057 4059 4062 CONECT 4059 4058 4060 4061 CONECT 4060 4059 CONECT 4061 4059 CONECT 4062 4058 4063 CONECT 4063 4062 4064 CONECT 4064 4056 4063 CONECT 4065 4031 4066 4067 4068 CONECT 4066 4065 CONECT 4067 4065 CONECT 4068 4065 CONECT 4069 4070 4071 CONECT 4070 4069 CONECT 4071 4069 4072 4073 CONECT 4072 4071 CONECT 4073 4071 4074 CONECT 4074 4073 CONECT 4075 4076 4077 CONECT 4076 4075 CONECT 4077 4075 4078 4079 CONECT 4078 4077 CONECT 4079 4077 4080 CONECT 4080 4079 MASTER 363 0 4 22 15 0 12 6 4241 1 108 38 END