HEADER HYDROLASE 14-JAN-05 2BHN TITLE XPF FROM AEROPYRUM PERNIX COMPND MOL_ID: 1; COMPND 2 MOLECULE: XPF ENDONUCLEASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: 19-231; COMPND 5 EC: 2.7.7.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEROPYRUM PERNIX; SOURCE 3 ORGANISM_TAXID: 56636; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VARIANT: ROSETTA/PLYSS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-14B-3C; SOURCE 9 OTHER_DETAILS: A PERNIX GENOME SEQUENCING PROJECT GNE APE 1436, SOURCE 10 ACCESSION CODE C72622 KEYWDS HYDROLASE, STRUCTURE SPECIFIC ENDONUCLEASE, NUCLEOTIDE EXCISION KEYWDS 2 REPAIR EXPDTA X-RAY DIFFRACTION AUTHOR M.NEWMAN,J.MURRAY-RUST,J.LALLY,J.RUDOLF,A.FADDEN,P.P.KNOWLES, AUTHOR 2 M.F.WHITE,N.Q.MCDONALD REVDAT 6 13-DEC-23 2BHN 1 REMARK REVDAT 5 08-MAY-19 2BHN 1 REMARK REVDAT 4 14-MAR-18 2BHN 1 SOURCE AUTHOR JRNL REVDAT 3 24-FEB-09 2BHN 1 VERSN REVDAT 2 15-JUN-05 2BHN 1 JRNL REVDAT 1 23-FEB-05 2BHN 0 JRNL AUTH M.NEWMAN,J.MURRAY-RUST,J.LALLY,J.RUDOLF,A.FADDEN, JRNL AUTH 2 P.P.KNOWLES,M.F.WHITE,N.Q.MCDONALD JRNL TITL STRUCTURE OF AN XPF ENDONUCLEASE WITH AND WITHOUT DNA JRNL TITL 2 SUGGESTS A MODEL FOR SUBSTRATE RECOGNITION. JRNL REF EMBO J. V. 24 895 2005 JRNL REFN ISSN 0261-4189 JRNL PMID 15719018 JRNL DOI 10.1038/SJ.EMBOJ.7600581 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 14575 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.320 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 768 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1059 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.4550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5905 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.02000 REMARK 3 B22 (A**2) : -1.34000 REMARK 3 B33 (A**2) : 0.38000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.05000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.663 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.535 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 62.516 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.923 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.836 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6018 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8205 ; 1.703 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 808 ; 7.100 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 205 ;34.367 ;23.317 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 882 ;21.259 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;20.758 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 981 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4502 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3173 ; 0.271 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4124 ; 0.326 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 280 ; 0.197 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 57 ; 0.298 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.291 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4130 ; 0.436 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6431 ; 0.762 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2114 ; 1.164 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1774 ; 1.985 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 20 A 147 6 REMARK 3 1 B 20 B 147 6 REMARK 3 1 C 20 C 147 6 REMARK 3 1 D 20 D 147 6 REMARK 3 2 A 164 A 229 6 REMARK 3 2 B 164 B 229 6 REMARK 3 2 C 164 C 229 6 REMARK 3 2 D 164 D 229 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 1310 ; 8.02 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 B (A): 1310 ; 7.92 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 C (A): 1310 ; 8.01 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 D (A): 1310 ; 7.89 ; 5.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 1310 ; 2.30 ; 10.00 REMARK 3 LOOSE THERMAL 1 B (A**2): 1310 ; 2.31 ; 10.00 REMARK 3 LOOSE THERMAL 1 C (A**2): 1310 ; 2.69 ; 10.00 REMARK 3 LOOSE THERMAL 1 D (A**2): 1310 ; 1.85 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 19 A 151 REMARK 3 ORIGIN FOR THE GROUP (A): 67.8935 2.9784 19.7337 REMARK 3 T TENSOR REMARK 3 T11: -0.3622 T22: -0.2627 REMARK 3 T33: -0.3482 T12: -0.0046 REMARK 3 T13: 0.0336 T23: 0.0539 REMARK 3 L TENSOR REMARK 3 L11: 3.7404 L22: 2.4122 REMARK 3 L33: 2.4175 L12: -0.0031 REMARK 3 L13: 1.4221 L23: 0.2178 REMARK 3 S TENSOR REMARK 3 S11: 0.0118 S12: 0.2561 S13: 0.1476 REMARK 3 S21: -0.0174 S22: 0.0994 S23: -0.2135 REMARK 3 S31: -0.4172 S32: 0.1268 S33: -0.1112 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 19 B 149 REMARK 3 ORIGIN FOR THE GROUP (A): 48.1695 -4.6955 20.1231 REMARK 3 T TENSOR REMARK 3 T11: -0.4359 T22: -0.2625 REMARK 3 T33: -0.3856 T12: 0.1197 REMARK 3 T13: -0.0384 T23: 0.0627 REMARK 3 L TENSOR REMARK 3 L11: 5.0057 L22: 3.3911 REMARK 3 L33: 5.5271 L12: 2.5298 REMARK 3 L13: 0.0985 L23: 2.8622 REMARK 3 S TENSOR REMARK 3 S11: 0.0642 S12: -0.0742 S13: 0.3161 REMARK 3 S21: 0.1006 S22: -0.0631 S23: 0.2488 REMARK 3 S31: -0.1904 S32: -0.3769 S33: -0.0010 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 20 C 147 REMARK 3 ORIGIN FOR THE GROUP (A): 10.5497 4.0411 38.0647 REMARK 3 T TENSOR REMARK 3 T11: 0.2425 T22: 0.4065 REMARK 3 T33: 0.2913 T12: 0.1109 REMARK 3 T13: 0.1176 T23: -0.0349 REMARK 3 L TENSOR REMARK 3 L11: 5.8693 L22: 2.2689 REMARK 3 L33: 4.9675 L12: -0.0212 REMARK 3 L13: -2.1714 L23: 2.5875 REMARK 3 S TENSOR REMARK 3 S11: -0.0123 S12: -1.2015 S13: -0.3558 REMARK 3 S21: 0.4222 S22: -0.0077 S23: -0.0038 REMARK 3 S31: 0.1316 S32: 0.7629 S33: 0.0199 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 19 D 151 REMARK 3 ORIGIN FOR THE GROUP (A): 20.9757 -3.8908 21.2822 REMARK 3 T TENSOR REMARK 3 T11: 0.1578 T22: 0.1498 REMARK 3 T33: 0.0716 T12: 0.1115 REMARK 3 T13: -0.0319 T23: -0.0854 REMARK 3 L TENSOR REMARK 3 L11: 6.7370 L22: 3.2293 REMARK 3 L33: 2.8572 L12: -0.4431 REMARK 3 L13: -1.4914 L23: 2.0601 REMARK 3 S TENSOR REMARK 3 S11: 0.1522 S12: 0.1424 S13: -0.0428 REMARK 3 S21: 0.2516 S22: 0.0163 S23: -0.3850 REMARK 3 S31: -0.2893 S32: 0.4480 S33: -0.1685 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 166 A 229 REMARK 3 ORIGIN FOR THE GROUP (A): 90.1001 -18.2227 45.8415 REMARK 3 T TENSOR REMARK 3 T11: -0.1928 T22: -0.3105 REMARK 3 T33: 0.1441 T12: 0.0984 REMARK 3 T13: -0.0084 T23: -0.0362 REMARK 3 L TENSOR REMARK 3 L11: 2.8684 L22: 6.0084 REMARK 3 L33: 9.0544 L12: -0.0051 REMARK 3 L13: 1.2143 L23: 1.6775 REMARK 3 S TENSOR REMARK 3 S11: 0.1719 S12: 0.1372 S13: -0.7415 REMARK 3 S21: -0.3210 S22: -0.0970 S23: -1.0499 REMARK 3 S31: 0.7024 S32: 0.0750 S33: -0.0749 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 162 B 229 REMARK 3 ORIGIN FOR THE GROUP (A): 91.8560 -4.9501 48.5745 REMARK 3 T TENSOR REMARK 3 T11: -0.2881 T22: -0.4822 REMARK 3 T33: -0.2116 T12: -0.0011 REMARK 3 T13: 0.0445 T23: -0.0356 REMARK 3 L TENSOR REMARK 3 L11: 12.1468 L22: 12.7391 REMARK 3 L33: 3.0848 L12: -3.7193 REMARK 3 L13: 1.5717 L23: 0.8294 REMARK 3 S TENSOR REMARK 3 S11: -0.1984 S12: 0.3741 S13: 0.0968 REMARK 3 S21: -0.0037 S22: 0.1984 S23: -1.2545 REMARK 3 S31: 0.0419 S32: 0.1683 S33: 0.0001 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 164 C 229 REMARK 3 ORIGIN FOR THE GROUP (A): 12.5294 8.1534 -13.0352 REMARK 3 T TENSOR REMARK 3 T11: -0.4228 T22: -0.4043 REMARK 3 T33: -0.2622 T12: -0.0250 REMARK 3 T13: 0.0121 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 6.7339 L22: 10.0918 REMARK 3 L33: 7.6563 L12: -0.3118 REMARK 3 L13: -1.5816 L23: -0.2786 REMARK 3 S TENSOR REMARK 3 S11: -0.1187 S12: 0.3386 S13: -0.5031 REMARK 3 S21: -0.5852 S22: -0.2633 S23: -0.4684 REMARK 3 S31: 0.5766 S32: 0.4739 S33: 0.3820 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 166 D 229 REMARK 3 ORIGIN FOR THE GROUP (A): 13.8720 22.2627 -9.7803 REMARK 3 T TENSOR REMARK 3 T11: -0.3793 T22: -0.3529 REMARK 3 T33: -0.1899 T12: -0.0097 REMARK 3 T13: 0.0239 T23: -0.0346 REMARK 3 L TENSOR REMARK 3 L11: 5.9431 L22: 8.9245 REMARK 3 L33: 8.0222 L12: 1.2635 REMARK 3 L13: 1.0609 L23: -0.0118 REMARK 3 S TENSOR REMARK 3 S11: -0.1314 S12: -0.2522 S13: 0.5230 REMARK 3 S21: 0.0275 S22: -0.0961 S23: -0.2067 REMARK 3 S31: -0.4429 S32: 0.2169 S33: 0.2275 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2BHN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-JAN-05. REMARK 100 THE DEPOSITION ID IS D_1290022408. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 120.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52273 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 38.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.31000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: SEPARATE DOMAINS FROM PART-REFINED PDB ENTRY 2BGW REMARK 200 REMARK 200 REMARK: SOLUTION CHECKED BY CROSS-PHASING OF AN OSMATE DERIVATIVE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 65% V/V MPD, 0.1M TRIS-HCL PH8.0. REMARK 280 SITTING DROPS., VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 105.16250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.37600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 105.16250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.37600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 148.42703 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 101.32561 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 18 REMARK 465 ARG A 230 REMARK 465 SER A 231 REMARK 465 ARG B 18 REMARK 465 GLU B 150 REMARK 465 GLY B 151 REMARK 465 GLY B 152 REMARK 465 GLN B 153 REMARK 465 ARG B 154 REMARK 465 ILE B 155 REMARK 465 VAL B 156 REMARK 465 ILE B 157 REMARK 465 HIS B 158 REMARK 465 LYS B 159 REMARK 465 LYS B 160 REMARK 465 PRO B 161 REMARK 465 ARG B 230 REMARK 465 SER B 231 REMARK 465 ARG C 18 REMARK 465 PRO C 19 REMARK 465 THR C 148 REMARK 465 ARG C 149 REMARK 465 GLU C 150 REMARK 465 GLY C 151 REMARK 465 GLY C 152 REMARK 465 GLN C 153 REMARK 465 ARG C 154 REMARK 465 ILE C 155 REMARK 465 VAL C 156 REMARK 465 ILE C 157 REMARK 465 HIS C 158 REMARK 465 LYS C 159 REMARK 465 LYS C 160 REMARK 465 PRO C 161 REMARK 465 ARG C 162 REMARK 465 LEU C 163 REMARK 465 ARG C 230 REMARK 465 SER C 231 REMARK 465 ARG D 18 REMARK 465 ARG D 230 REMARK 465 SER D 231 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 20 NE CZ NH1 NH2 REMARK 470 ARG A 29 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 42 CG CD OE1 NE2 REMARK 470 ASP A 57 CG OD1 OD2 REMARK 470 LYS A 71 CG CD CE NZ REMARK 470 ARG A 77 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 80 CG CD OE1 OE2 REMARK 470 GLU A 87 CG CD OE1 OE2 REMARK 470 ARG A 103 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 106 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 108 CZ NH1 NH2 REMARK 470 ARG A 110 CD NE CZ NH1 NH2 REMARK 470 LYS A 134 CE NZ REMARK 470 THR A 148 OG1 CG2 REMARK 470 LYS A 159 CG CD CE NZ REMARK 470 ARG A 162 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 163 CG CD1 CD2 REMARK 470 SER A 164 CB OG REMARK 470 ASP A 165 CG OD1 OD2 REMARK 470 ARG A 167 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 168 CG CD OE1 OE2 REMARK 470 ARG A 183 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 187 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 190 CG CD OE1 OE2 REMARK 470 ARG A 191 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 197 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 203 CG CD CE NZ REMARK 470 GLU A 205 CG CD OE1 OE2 REMARK 470 LYS A 208 CG CD CE NZ REMARK 470 LYS A 215 CG CD CE NZ REMARK 470 GLU A 218 CG CD OE1 OE2 REMARK 470 GLU A 219 CG CD OE1 OE2 REMARK 470 LYS A 222 CG CD CE NZ REMARK 470 LYS A 229 CG CD CE NZ REMARK 470 ARG B 26 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 28 CG CD OE1 OE2 REMARK 470 ARG B 29 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 46 CE NZ REMARK 470 GLN B 47 N CG CD OE1 NE2 REMARK 470 ASP B 57 CG OD1 OD2 REMARK 470 ASP B 68 CG OD1 OD2 REMARK 470 LYS B 71 CG CD CE NZ REMARK 470 ARG B 77 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 80 CG CD OE1 OE2 REMARK 470 ARG B 84 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 103 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 104 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 106 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 109 CG CD OE1 OE2 REMARK 470 ARG B 110 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 134 CG CD CE NZ REMARK 470 THR B 148 OG1 CG2 REMARK 470 ARG B 162 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 163 CG CD1 CD2 REMARK 470 ASP B 165 CG OD1 OD2 REMARK 470 ARG B 167 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 183 NE CZ NH1 NH2 REMARK 470 ARG B 187 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 190 CG CD OE1 OE2 REMARK 470 ARG B 191 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 197 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 203 CG CD CE NZ REMARK 470 GLU B 205 CG CD OE1 OE2 REMARK 470 LYS B 208 CG CD CE NZ REMARK 470 LYS B 215 CG CD CE NZ REMARK 470 ARG B 216 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 219 CG CD OE1 OE2 REMARK 470 LYS B 221 CG CD CE NZ REMARK 470 LYS B 229 CG CD CE NZ REMARK 470 ARG C 20 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 27 CG CD OE1 OE2 REMARK 470 ARG C 29 CG CD NE CZ NH1 NH2 REMARK 470 SER C 30 OG REMARK 470 LEU C 36 CB CG CD1 CD2 REMARK 470 GLU C 37 CG CD OE1 OE2 REMARK 470 LEU C 39 CG CD1 CD2 REMARK 470 GLN C 42 CG CD OE1 NE2 REMARK 470 LYS C 46 CG CD CE NZ REMARK 470 ASP C 57 CG OD1 OD2 REMARK 470 SER C 58 OG REMARK 470 ILE C 60 CG1 CG2 CD1 REMARK 470 LYS C 64 CG CD CE NZ REMARK 470 SER C 67 OG REMARK 470 LYS C 71 CG CD CE NZ REMARK 470 LEU C 73 CG CD1 CD2 REMARK 470 PHE C 74 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG C 77 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 80 CG CD OE1 OE2 REMARK 470 ARG C 84 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 87 CG CD OE1 OE2 REMARK 470 ARG C 103 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 104 CD NE CZ NH1 NH2 REMARK 470 ARG C 106 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 108 CZ NH1 NH2 REMARK 470 ARG C 110 CD NE CZ NH1 NH2 REMARK 470 ARG C 126 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 134 CG CD CE NZ REMARK 470 SER C 164 OG REMARK 470 ASP C 165 CG OD1 OD2 REMARK 470 ARG C 167 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 183 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 190 CG CD OE1 OE2 REMARK 470 ARG C 191 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 197 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 203 CG CD CE NZ REMARK 470 LYS C 208 CG CD CE NZ REMARK 470 GLU C 214 CG CD OE1 OE2 REMARK 470 LYS C 215 CG CD CE NZ REMARK 470 GLU C 218 CG CD OE1 OE2 REMARK 470 GLU C 219 CG CD OE1 OE2 REMARK 470 LYS C 221 CG CD CE NZ REMARK 470 LYS C 222 CG CD CE NZ REMARK 470 LYS C 229 CG CD CE NZ REMARK 470 ARG D 20 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 28 CG CD OE1 OE2 REMARK 470 ARG D 29 CG CD NE CZ NH1 NH2 REMARK 470 LEU D 36 CG CD1 CD2 REMARK 470 LYS D 46 CG CD CE NZ REMARK 470 ASP D 57 CG OD1 OD2 REMARK 470 LYS D 64 CE NZ REMARK 470 LYS D 71 CG CD CE NZ REMARK 470 LEU D 73 CG CD1 CD2 REMARK 470 ARG D 77 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 80 CG CD OE1 OE2 REMARK 470 ARG D 84 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 87 CG CD OE1 OE2 REMARK 470 ARG D 103 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 104 CD NE CZ NH1 NH2 REMARK 470 ARG D 106 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 108 CZ NH1 NH2 REMARK 470 ARG D 110 CG CD NE CZ NH1 NH2 REMARK 470 TYR D 113 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TYR D 123 CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG D 126 CG CD NE CZ NH1 NH2 REMARK 470 MET D 131 CG SD CE REMARK 470 LYS D 134 CG CD CE NZ REMARK 470 ARG D 162 CG CD NE CZ NH1 NH2 REMARK 470 LEU D 163 CG CD1 CD2 REMARK 470 SER D 164 OG REMARK 470 ARG D 167 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 168 CG CD OE1 OE2 REMARK 470 ARG D 191 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 196 CG CD OE1 OE2 REMARK 470 LYS D 203 CG CD CE NZ REMARK 470 GLU D 214 CG CD OE1 OE2 REMARK 470 LYS D 215 CG CD CE NZ REMARK 470 GLU D 219 CG CD OE1 OE2 REMARK 470 LYS D 222 CG CD CE NZ REMARK 470 LYS D 229 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP D 75 N ARG D 77 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR C 172 CA TYR C 172 C 0.171 REMARK 500 TYR C 172 C TYR C 172 O 0.144 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 126 NE - CZ - NH1 ANGL. DEV. = -4.1 DEGREES REMARK 500 PRO C 100 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 26 -39.97 -35.34 REMARK 500 GLU A 28 -5.11 -48.75 REMARK 500 ASP A 57 -38.35 -27.47 REMARK 500 THR A 65 153.52 -47.75 REMARK 500 PHE A 74 -8.03 -59.26 REMARK 500 HIS A 88 -24.44 -140.36 REMARK 500 ILE A 125 119.71 -10.51 REMARK 500 ARG A 162 42.14 -85.59 REMARK 500 LEU A 163 158.23 -42.82 REMARK 500 LYS A 208 -8.46 -53.88 REMARK 500 PRO A 227 -177.24 -64.53 REMARK 500 TYR A 228 -148.93 -105.70 REMARK 500 GLU B 28 -34.79 -33.39 REMARK 500 SER B 56 -97.25 -161.77 REMARK 500 ASP B 57 2.31 -172.24 REMARK 500 SER B 58 -28.29 -152.34 REMARK 500 PHE B 74 36.49 -77.26 REMARK 500 ALA B 82 -72.10 -41.41 REMARK 500 ARG B 106 109.78 -55.08 REMARK 500 ARG B 108 47.47 -69.35 REMARK 500 ASP B 132 -175.27 -174.75 REMARK 500 GLU B 190 -74.43 -65.03 REMARK 500 LYS B 215 -82.60 -13.56 REMARK 500 VAL C 25 -6.94 -49.84 REMARK 500 GLU C 27 47.17 -98.19 REMARK 500 ARG C 29 -10.08 -150.27 REMARK 500 PRO C 33 -47.14 -28.49 REMARK 500 VAL C 55 -39.20 -148.58 REMARK 500 SER C 66 -32.23 -37.06 REMARK 500 ARG C 77 -84.25 -11.32 REMARK 500 LEU C 78 -75.43 -12.13 REMARK 500 GLU C 87 5.42 -66.84 REMARK 500 PRO C 100 -62.03 -23.93 REMARK 500 ARG C 103 -33.01 -39.59 REMARK 500 TYR C 105 45.59 -97.42 REMARK 500 ILE C 125 131.66 -30.59 REMARK 500 LYS C 203 -29.78 -38.54 REMARK 500 ALA C 204 -70.85 -71.29 REMARK 500 ARG D 77 -9.35 -41.67 REMARK 500 LEU D 78 -79.30 -74.82 REMARK 500 GLU D 90 -64.25 -104.37 REMARK 500 ARG D 108 23.53 -75.95 REMARK 500 LEU D 112 -70.86 -49.62 REMARK 500 ALA D 144 -71.01 -38.21 REMARK 500 LEU D 146 20.54 -68.14 REMARK 500 GLU D 150 142.28 -36.75 REMARK 500 SER D 164 -83.56 -89.79 REMARK 500 ALA D 204 -72.95 -45.82 REMARK 500 VAL D 209 107.27 -53.74 REMARK 500 GLU D 214 -72.79 -62.31 REMARK 500 REMARK 500 THIS ENTRY HAS 51 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 TYR C 172 -16.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BGW RELATED DB: PDB REMARK 900 XPF FROM AEROPYRUM PERNIX, COMPLEX WITH DNA REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES 19-231 ONLY DBREF 2BHN A 18 231 UNP Q9YC15 Q9YC15 18 231 DBREF 2BHN B 18 231 UNP Q9YC15 Q9YC15 18 231 DBREF 2BHN C 18 231 UNP Q9YC15 Q9YC15 18 231 DBREF 2BHN D 18 231 UNP Q9YC15 Q9YC15 18 231 SEQRES 1 A 214 ARG PRO ARG VAL TYR VAL ASP VAL ARG GLU GLU ARG SER SEQRES 2 A 214 PRO VAL PRO SER ILE LEU GLU SER LEU GLY VAL GLN VAL SEQRES 3 A 214 ILE PRO LYS GLN LEU PRO MET GLY ASP TYR LEU VAL SER SEQRES 4 A 214 ASP SER ILE ILE VAL GLU ARG LYS THR SER SER ASP PHE SEQRES 5 A 214 ALA LYS SER LEU PHE ASP GLY ARG LEU PHE GLU GLN ALA SEQRES 6 A 214 SER ARG LEU ALA GLU HIS TYR GLU THR VAL PHE ILE ILE SEQRES 7 A 214 VAL GLU GLY PRO PRO VAL PRO ARG ARG TYR ARG GLY ARG SEQRES 8 A 214 GLU ARG SER LEU TYR ALA ALA MET ALA ALA LEU GLN LEU SEQRES 9 A 214 ASP TYR GLY ILE ARG LEU MET ASN THR MET ASP PRO LYS SEQRES 10 A 214 GLY THR ALA LEU VAL ILE GLU SER LEU ALA ARG LEU SER SEQRES 11 A 214 THR ARG GLU GLY GLY GLN ARG ILE VAL ILE HIS LYS LYS SEQRES 12 A 214 PRO ARG LEU SER ASP VAL ARG GLU TRP GLN LEU TYR ILE SEQRES 13 A 214 LEU GLN SER PHE PRO GLY ILE GLY ARG ARG THR ALA GLU SEQRES 14 A 214 ARG ILE LEU GLU ARG PHE GLY SER LEU GLU ARG PHE PHE SEQRES 15 A 214 THR ALA SER LYS ALA GLU ILE SER LYS VAL GLU GLY ILE SEQRES 16 A 214 GLY GLU LYS ARG ALA GLU GLU ILE LYS LYS ILE LEU MET SEQRES 17 A 214 THR PRO TYR LYS ARG SER SEQRES 1 B 214 ARG PRO ARG VAL TYR VAL ASP VAL ARG GLU GLU ARG SER SEQRES 2 B 214 PRO VAL PRO SER ILE LEU GLU SER LEU GLY VAL GLN VAL SEQRES 3 B 214 ILE PRO LYS GLN LEU PRO MET GLY ASP TYR LEU VAL SER SEQRES 4 B 214 ASP SER ILE ILE VAL GLU ARG LYS THR SER SER ASP PHE SEQRES 5 B 214 ALA LYS SER LEU PHE ASP GLY ARG LEU PHE GLU GLN ALA SEQRES 6 B 214 SER ARG LEU ALA GLU HIS TYR GLU THR VAL PHE ILE ILE SEQRES 7 B 214 VAL GLU GLY PRO PRO VAL PRO ARG ARG TYR ARG GLY ARG SEQRES 8 B 214 GLU ARG SER LEU TYR ALA ALA MET ALA ALA LEU GLN LEU SEQRES 9 B 214 ASP TYR GLY ILE ARG LEU MET ASN THR MET ASP PRO LYS SEQRES 10 B 214 GLY THR ALA LEU VAL ILE GLU SER LEU ALA ARG LEU SER SEQRES 11 B 214 THR ARG GLU GLY GLY GLN ARG ILE VAL ILE HIS LYS LYS SEQRES 12 B 214 PRO ARG LEU SER ASP VAL ARG GLU TRP GLN LEU TYR ILE SEQRES 13 B 214 LEU GLN SER PHE PRO GLY ILE GLY ARG ARG THR ALA GLU SEQRES 14 B 214 ARG ILE LEU GLU ARG PHE GLY SER LEU GLU ARG PHE PHE SEQRES 15 B 214 THR ALA SER LYS ALA GLU ILE SER LYS VAL GLU GLY ILE SEQRES 16 B 214 GLY GLU LYS ARG ALA GLU GLU ILE LYS LYS ILE LEU MET SEQRES 17 B 214 THR PRO TYR LYS ARG SER SEQRES 1 C 214 ARG PRO ARG VAL TYR VAL ASP VAL ARG GLU GLU ARG SER SEQRES 2 C 214 PRO VAL PRO SER ILE LEU GLU SER LEU GLY VAL GLN VAL SEQRES 3 C 214 ILE PRO LYS GLN LEU PRO MET GLY ASP TYR LEU VAL SER SEQRES 4 C 214 ASP SER ILE ILE VAL GLU ARG LYS THR SER SER ASP PHE SEQRES 5 C 214 ALA LYS SER LEU PHE ASP GLY ARG LEU PHE GLU GLN ALA SEQRES 6 C 214 SER ARG LEU ALA GLU HIS TYR GLU THR VAL PHE ILE ILE SEQRES 7 C 214 VAL GLU GLY PRO PRO VAL PRO ARG ARG TYR ARG GLY ARG SEQRES 8 C 214 GLU ARG SER LEU TYR ALA ALA MET ALA ALA LEU GLN LEU SEQRES 9 C 214 ASP TYR GLY ILE ARG LEU MET ASN THR MET ASP PRO LYS SEQRES 10 C 214 GLY THR ALA LEU VAL ILE GLU SER LEU ALA ARG LEU SER SEQRES 11 C 214 THR ARG GLU GLY GLY GLN ARG ILE VAL ILE HIS LYS LYS SEQRES 12 C 214 PRO ARG LEU SER ASP VAL ARG GLU TRP GLN LEU TYR ILE SEQRES 13 C 214 LEU GLN SER PHE PRO GLY ILE GLY ARG ARG THR ALA GLU SEQRES 14 C 214 ARG ILE LEU GLU ARG PHE GLY SER LEU GLU ARG PHE PHE SEQRES 15 C 214 THR ALA SER LYS ALA GLU ILE SER LYS VAL GLU GLY ILE SEQRES 16 C 214 GLY GLU LYS ARG ALA GLU GLU ILE LYS LYS ILE LEU MET SEQRES 17 C 214 THR PRO TYR LYS ARG SER SEQRES 1 D 214 ARG PRO ARG VAL TYR VAL ASP VAL ARG GLU GLU ARG SER SEQRES 2 D 214 PRO VAL PRO SER ILE LEU GLU SER LEU GLY VAL GLN VAL SEQRES 3 D 214 ILE PRO LYS GLN LEU PRO MET GLY ASP TYR LEU VAL SER SEQRES 4 D 214 ASP SER ILE ILE VAL GLU ARG LYS THR SER SER ASP PHE SEQRES 5 D 214 ALA LYS SER LEU PHE ASP GLY ARG LEU PHE GLU GLN ALA SEQRES 6 D 214 SER ARG LEU ALA GLU HIS TYR GLU THR VAL PHE ILE ILE SEQRES 7 D 214 VAL GLU GLY PRO PRO VAL PRO ARG ARG TYR ARG GLY ARG SEQRES 8 D 214 GLU ARG SER LEU TYR ALA ALA MET ALA ALA LEU GLN LEU SEQRES 9 D 214 ASP TYR GLY ILE ARG LEU MET ASN THR MET ASP PRO LYS SEQRES 10 D 214 GLY THR ALA LEU VAL ILE GLU SER LEU ALA ARG LEU SER SEQRES 11 D 214 THR ARG GLU GLY GLY GLN ARG ILE VAL ILE HIS LYS LYS SEQRES 12 D 214 PRO ARG LEU SER ASP VAL ARG GLU TRP GLN LEU TYR ILE SEQRES 13 D 214 LEU GLN SER PHE PRO GLY ILE GLY ARG ARG THR ALA GLU SEQRES 14 D 214 ARG ILE LEU GLU ARG PHE GLY SER LEU GLU ARG PHE PHE SEQRES 15 D 214 THR ALA SER LYS ALA GLU ILE SER LYS VAL GLU GLY ILE SEQRES 16 D 214 GLY GLU LYS ARG ALA GLU GLU ILE LYS LYS ILE LEU MET SEQRES 17 D 214 THR PRO TYR LYS ARG SER HELIX 1 1 ARG A 26 SER A 30 5 5 HELIX 2 2 PRO A 31 SER A 38 1 8 HELIX 3 3 SER A 66 ASP A 75 1 10 HELIX 4 4 ARG A 77 GLU A 87 1 11 HELIX 5 5 PRO A 102 ARG A 106 5 5 HELIX 6 6 ARG A 108 GLY A 124 1 17 HELIX 7 7 ASP A 132 THR A 148 1 17 HELIX 8 8 ASP A 165 GLN A 175 1 11 HELIX 9 9 GLY A 181 GLY A 193 1 13 HELIX 10 10 SER A 194 THR A 200 1 7 HELIX 11 11 SER A 202 LYS A 208 1 7 HELIX 12 12 GLY A 213 THR A 226 1 14 HELIX 13 13 VAL B 25 ARG B 29 1 5 HELIX 14 14 PRO B 31 SER B 38 1 8 HELIX 15 15 SER B 66 PHE B 74 1 9 HELIX 16 16 ARG B 77 TYR B 89 1 13 HELIX 17 17 PRO B 102 ARG B 106 5 5 HELIX 18 18 ARG B 108 TYR B 123 1 16 HELIX 19 19 ASP B 132 THR B 148 1 17 HELIX 20 20 SER B 164 GLN B 175 1 12 HELIX 21 21 GLY B 181 GLY B 193 1 13 HELIX 22 22 LEU B 195 THR B 200 1 6 HELIX 23 23 SER B 202 SER B 207 1 6 HELIX 24 24 GLY B 213 LEU B 224 1 12 HELIX 25 25 ARG C 26 GLU C 28 5 3 HELIX 26 26 VAL C 32 GLU C 37 1 6 HELIX 27 27 SER C 66 PHE C 74 1 9 HELIX 28 28 ARG C 77 GLU C 87 1 11 HELIX 29 29 PRO C 102 ARG C 106 5 5 HELIX 30 30 ARG C 108 GLY C 124 1 17 HELIX 31 31 ASP C 132 LEU C 146 1 15 HELIX 32 32 SER C 164 GLN C 175 1 12 HELIX 33 33 GLY C 181 GLY C 193 1 13 HELIX 34 34 SER C 194 THR C 200 1 7 HELIX 35 35 SER C 202 LYS C 208 1 7 HELIX 36 36 GLY C 213 THR C 226 1 14 HELIX 37 37 ARG D 26 SER D 30 5 5 HELIX 38 38 PRO D 31 LEU D 39 1 9 HELIX 39 39 SER D 66 PHE D 74 1 9 HELIX 40 40 ARG D 77 TYR D 89 1 13 HELIX 41 41 PRO D 102 ARG D 106 5 5 HELIX 42 42 ARG D 108 GLY D 124 1 17 HELIX 43 43 ASP D 132 LEU D 146 1 15 HELIX 44 44 ASP D 165 SER D 176 1 12 HELIX 45 45 GLY D 181 GLY D 193 1 13 HELIX 46 46 SER D 194 ALA D 201 1 8 HELIX 47 47 SER D 202 LYS D 208 1 7 HELIX 48 48 GLU D 214 THR D 226 1 13 SHEET 1 AA 6 GLN A 42 LYS A 46 0 SHEET 2 AA 6 ARG A 20 ASP A 24 1 O VAL A 21 N ILE A 44 SHEET 3 AA 6 TYR A 53 SER A 56 -1 O LEU A 54 N TYR A 22 SHEET 4 AA 6 ILE A 59 THR A 65 -1 O ILE A 59 N VAL A 55 SHEET 5 AA 6 THR A 91 GLU A 97 1 O THR A 91 N ILE A 60 SHEET 6 AA 6 ASN A 129 THR A 130 1 N THR A 130 O VAL A 96 SHEET 1 BA 6 GLN B 42 LYS B 46 0 SHEET 2 BA 6 ARG B 20 ASP B 24 1 O VAL B 21 N ILE B 44 SHEET 3 BA 6 TYR B 53 LEU B 54 -1 O LEU B 54 N TYR B 22 SHEET 4 BA 6 ILE B 59 THR B 65 -1 N VAL B 61 O TYR B 53 SHEET 5 BA 6 THR B 91 GLU B 97 1 O THR B 91 N ILE B 60 SHEET 6 BA 6 ARG B 126 THR B 130 1 O ARG B 126 N ILE B 94 SHEET 1 CA 2 VAL C 21 ASP C 24 0 SHEET 2 CA 2 VAL C 43 LYS C 46 1 O ILE C 44 N VAL C 23 SHEET 1 CB 4 TYR C 53 SER C 56 0 SHEET 2 CB 4 ILE C 59 THR C 65 -1 O ILE C 59 N SER C 56 SHEET 3 CB 4 THR C 91 GLU C 97 1 O THR C 91 N ILE C 60 SHEET 4 CB 4 ARG C 126 THR C 130 1 O ARG C 126 N ILE C 94 SHEET 1 DA 6 GLN D 42 LYS D 46 0 SHEET 2 DA 6 ARG D 20 ASP D 24 1 O VAL D 21 N ILE D 44 SHEET 3 DA 6 TYR D 53 LEU D 54 -1 O LEU D 54 N TYR D 22 SHEET 4 DA 6 ILE D 59 THR D 65 -1 O VAL D 61 N TYR D 53 SHEET 5 DA 6 THR D 91 GLU D 97 1 O THR D 91 N ILE D 60 SHEET 6 DA 6 ARG D 126 THR D 130 1 O ARG D 126 N ILE D 94 CRYST1 210.325 42.752 118.736 90.00 121.42 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004755 0.000000 0.002904 0.00000 SCALE2 0.000000 0.023391 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009869 0.00000 MTRIX1 1 -0.814520 -0.462640 0.350030 97.84138 1 MTRIX2 1 -0.454760 0.134560 -0.880390 43.09292 1 MTRIX3 1 0.360200 -0.876270 -0.320000 4.54055 1 MTRIX1 2 -0.609680 0.430260 0.665710 38.03769 1 MTRIX2 2 0.569260 -0.346750 0.745460 -47.70517 1 MTRIX3 2 0.551580 0.833450 -0.033520 -1.09623 1 MTRIX1 3 0.531800 -0.203010 -0.822180 1.93644 1 MTRIX2 3 -0.050690 -0.976730 0.208380 -1.53960 1 MTRIX3 3 -0.845350 -0.069150 -0.529710 89.51183 1 MTRIX1 4 0.435280 -0.024520 -0.899960 94.18008 1 MTRIX2 4 -0.032530 -0.999400 0.011490 -20.55905 1 MTRIX3 4 -0.899710 0.024270 -0.435820 150.65569 1 MTRIX1 5 0.977920 -0.025070 -0.207460 -66.52010 1 MTRIX2 5 0.022920 0.999660 -0.012790 25.00196 1 MTRIX3 5 0.207710 0.007760 0.978160 -77.18398 1 MTRIX1 6 0.597400 -0.007270 -0.801910 -3.33572 1 MTRIX2 6 -0.002280 -0.999970 0.007370 3.34292 1 MTRIX3 6 -0.801940 -0.002580 -0.597400 89.99927 1