HEADER OXIDOREDUCTASE 26-JAN-05 2BIX TITLE CRYSTAL STRUCTURE OF APOCAROTENOID CLEAVAGE OXYGENASE FROM TITLE 2 SYNECHOCYSTIS, FE-FREE APOENZYME COMPND MOL_ID: 1; COMPND 2 MOLECULE: APOCAROTENOID-CLEAVING OXYGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LIGNOSTILBENE-ALPHA, BETA-DIOXYGENASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCYSTIS SP.; SOURCE 3 ORGANISM_TAXID: 1148; SOURCE 4 STRAIN: PCC 6803; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET3B-ACO KEYWDS OXYGENASE, NON-HEME IRON, CAROTENOID CLEAVAGE, RETINAL KEYWDS 2 FORMATION, OXIDOREDUCTASE, DIOXYGENASE EXPDTA X-RAY DIFFRACTION AUTHOR D.P.KLOER,S.RUCH,S.AL-BABILI,P.BEYER,G.E.SCHULZ REVDAT 2 24-FEB-09 2BIX 1 VERSN REVDAT 1 14-APR-05 2BIX 0 JRNL AUTH D.P.KLOER,S.RUCH,S.AL-BABILI,P.BEYER,G.E.SCHULZ JRNL TITL THE STRUCTURE OF A RETINAL-FORMING CAROTENOID JRNL TITL 2 OXYGENASE JRNL REF SCIENCE V. 308 267 2005 JRNL REFN ISSN 0036-8075 JRNL PMID 15821095 JRNL DOI 10.1126/SCIENCE.1108965 REMARK 2 REMARK 2 RESOLUTION. 2.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT 5.6.1 REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 44422 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : 0.211 REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.1 REMARK 3 FREE R VALUE TEST SET COUNT : 2248 REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.211 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.210 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 5.1 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 2248 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 44422 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7534 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 114 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : 55.800 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.007 ; 2.0 ; 7810 REMARK 3 BOND ANGLES (DEGREES) : 1.173 ; 2.0 ; 10544 REMARK 3 TORSION ANGLES (DEGREES) : 20.237; 2.0 ; 4476 REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : 0.011 ; 2.0 ; 188 REMARK 3 GENERAL PLANES (A) : 0.019 ; 5.0 ; 1144 REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : 1.499 ; 20.0 ; 7810 REMARK 3 NON-BONDED CONTACTS (A) : 0.049 ; 5.0 ; 149 REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : 0 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 KSOL : 0.92 REMARK 3 BSOL : 188 REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : TNT PROTGEO REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2BIX COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-MAR-05. REMARK 100 THE PDBE ID CODE IS EBI-22581. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.70 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0716 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44859 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.680 REMARK 200 RESOLUTION RANGE LOW (A) : 45.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 8.700 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.31000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIRAS REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 102.78000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 61.46400 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 61.46400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.39000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 61.46400 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 61.46400 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 154.17000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 61.46400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.46400 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 51.39000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 61.46400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.46400 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 154.17000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 102.78000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 THR A 3 REMARK 465 SER A 4 REMARK 465 PRO A 5 REMARK 465 PRO A 6 REMARK 465 THR A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 PRO A 10 REMARK 465 SER A 11 REMARK 465 MET B 1 REMARK 465 VAL B 2 REMARK 465 THR B 3 REMARK 465 SER B 4 REMARK 465 PRO B 5 REMARK 465 PRO B 6 REMARK 465 THR B 7 REMARK 465 SER B 8 REMARK 465 SER B 9 REMARK 465 PRO B 10 REMARK 465 SER B 11 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS B 449 - O LEU B 452 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 133 N - CA - C ANGL. DEV. = -17.5 DEGREES REMARK 500 ILE A 283 CG1 - CB - CG2 ANGL. DEV. = -15.1 DEGREES REMARK 500 LEU A 452 N - CA - C ANGL. DEV. = -17.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 32 110.05 -172.94 REMARK 500 PHE A 126 -0.08 72.89 REMARK 500 ALA A 189 89.89 -158.16 REMARK 500 SER A 207 -74.16 -169.02 REMARK 500 ALA A 235 119.74 -164.87 REMARK 500 PHE A 303 -64.46 -93.57 REMARK 500 ASP A 333 -169.82 -112.30 REMARK 500 HIS A 453 61.31 -106.19 REMARK 500 TYR A 481 99.26 -36.84 REMARK 500 LEU A 483 -117.31 -111.46 REMARK 500 PHE B 126 -0.27 72.42 REMARK 500 ASP B 143 18.53 59.76 REMARK 500 SER B 181 153.03 -47.94 REMARK 500 ALA B 189 98.78 -166.45 REMARK 500 SER B 207 -94.11 -159.57 REMARK 500 PRO B 219 -9.37 -47.60 REMARK 500 LEU B 224 -61.78 -120.02 REMARK 500 GLN B 226 105.70 -169.34 REMARK 500 PHE B 301 99.95 -43.54 REMARK 500 PHE B 303 -60.68 -109.46 REMARK 500 GLU B 311 114.53 -169.47 REMARK 500 PRO B 376 -37.20 -39.21 REMARK 500 GLN B 401 -1.23 -141.28 REMARK 500 HIS B 453 56.02 -115.20 REMARK 500 TYR B 481 96.17 -31.66 REMARK 500 LEU B 483 -119.66 -97.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 LEU A 58 23.2 L L OUTSIDE RANGE REMARK 500 ASP A 83 22.7 L L OUTSIDE RANGE REMARK 500 TRP A 141 23.1 L L OUTSIDE RANGE REMARK 500 THR A 395 23.0 L L OUTSIDE RANGE REMARK 500 LEU B 58 24.5 L L OUTSIDE RANGE REMARK 500 ASP B 83 14.8 L L OUTSIDE RANGE REMARK 500 TRP B 141 24.6 L L OUTSIDE RANGE REMARK 500 THR B 395 21.0 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A1491 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E B1491 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1492 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1493 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BIW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF APOCAROTENOID CLEAVAGE REMARK 900 OXYGENASE FROM SYNECHOCYSTIS, NATIVE ENZYME REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE NAME OF THE MOLECULE IN THE UNIPROT DATABASE WITH REMARK 999 ACCESSION NUMBER P74334 IS LIGNOSTILBENE-ALPHA,BETA- REMARK 999 DIOXYGENASE BUT THE DEPOSITOR MAINTAINS THAT THIS IS A REMARK 999 DATABASE ERROR DBREF 2BIX A 1 490 UNP P74334 P74334_SYNY3 1 490 DBREF 2BIX B 1 490 UNP P74334 P74334_SYNY3 1 490 SEQRES 1 A 490 MET VAL THR SER PRO PRO THR SER SER PRO SER GLN ARG SEQRES 2 A 490 SER TYR SER PRO GLN ASP TRP LEU ARG GLY TYR GLN SER SEQRES 3 A 490 GLN PRO GLN GLU TRP ASP TYR TRP VAL GLU ASP VAL GLU SEQRES 4 A 490 GLY SER ILE PRO PRO ASP LEU GLN GLY THR LEU TYR ARG SEQRES 5 A 490 ASN GLY PRO GLY LEU LEU GLU ILE GLY ASP ARG PRO LEU SEQRES 6 A 490 LYS HIS PRO PHE ASP GLY ASP GLY MET VAL THR ALA PHE SEQRES 7 A 490 LYS PHE PRO GLY ASP GLY ARG VAL HIS PHE GLN SER LYS SEQRES 8 A 490 PHE VAL ARG THR GLN GLY TYR VAL GLU GLU GLN LYS ALA SEQRES 9 A 490 GLY LYS MET ILE TYR ARG GLY VAL PHE GLY SER GLN PRO SEQRES 10 A 490 ALA GLY GLY TRP LEU LYS THR ILE PHE ASP LEU ARG LEU SEQRES 11 A 490 LYS ASN ILE ALA ASN THR ASN ILE THR TYR TRP GLY ASP SEQRES 12 A 490 ARG LEU LEU ALA LEU TRP GLU GLY GLY GLN PRO HIS ARG SEQRES 13 A 490 LEU GLU PRO SER ASN LEU ALA THR ILE GLY LEU ASP ASP SEQRES 14 A 490 LEU GLY GLY ILE LEU ALA GLU GLY GLN PRO LEU SER ALA SEQRES 15 A 490 HIS PRO ARG ILE ASP PRO ALA SER THR PHE ASP GLY GLY SEQRES 16 A 490 GLN PRO CYS TYR VAL THR PHE SER ILE LYS SER SER LEU SEQRES 17 A 490 SER SER THR LEU THR LEU LEU GLU LEU ASP PRO GLN GLY SEQRES 18 A 490 LYS LEU LEU ARG GLN LYS THR GLU THR PHE PRO GLY PHE SEQRES 19 A 490 ALA PHE ILE HIS ASP PHE ALA ILE THR PRO HIS TYR ALA SEQRES 20 A 490 ILE PHE LEU GLN ASN ASN VAL THR LEU ASN GLY LEU PRO SEQRES 21 A 490 TYR LEU PHE GLY LEU ARG GLY ALA GLY GLU CYS VAL GLN SEQRES 22 A 490 PHE HIS PRO ASP LYS PRO ALA GLN ILE ILE LEU VAL PRO SEQRES 23 A 490 ARG ASP GLY GLY GLU ILE LYS ARG ILE PRO VAL GLN ALA SEQRES 24 A 490 GLY PHE VAL PHE HIS HIS ALA ASN ALA PHE GLU GLU ASN SEQRES 25 A 490 GLY LYS ILE ILE LEU ASP SER ILE CYS TYR ASN SER LEU SEQRES 26 A 490 PRO GLN VAL ASP THR ASP GLY ASP PHE ARG SER THR ASN SEQRES 27 A 490 PHE ASP ASN LEU ASP PRO GLY GLN LEU TRP ARG PHE THR SEQRES 28 A 490 ILE ASP PRO ALA ALA ALA THR VAL GLU LYS GLN LEU MET SEQRES 29 A 490 VAL SER ARG CYS CYS GLU PHE PRO VAL VAL HIS PRO GLN SEQRES 30 A 490 GLN VAL GLY ARG PRO TYR ARG TYR VAL TYR MET GLY ALA SEQRES 31 A 490 ALA HIS HIS SER THR GLY ASN ALA PRO LEU GLN ALA ILE SEQRES 32 A 490 LEU LYS VAL ASP LEU GLU SER GLY THR GLU THR LEU ARG SEQRES 33 A 490 SER PHE ALA PRO HIS GLY PHE ALA GLY GLU PRO ILE PHE SEQRES 34 A 490 VAL PRO ARG PRO GLY GLY VAL ALA GLU ASP ASP GLY TRP SEQRES 35 A 490 LEU LEU CYS LEU ILE TYR LYS ALA ASP LEU HIS ARG SER SEQRES 36 A 490 GLU LEU VAL ILE LEU ASP ALA GLN ASP ILE THR ALA PRO SEQRES 37 A 490 ALA ILE ALA THR LEU LYS LEU LYS HIS HIS ILE PRO TYR SEQRES 38 A 490 PRO LEU HIS GLY SER TRP ALA GLN THR SEQRES 1 B 490 MET VAL THR SER PRO PRO THR SER SER PRO SER GLN ARG SEQRES 2 B 490 SER TYR SER PRO GLN ASP TRP LEU ARG GLY TYR GLN SER SEQRES 3 B 490 GLN PRO GLN GLU TRP ASP TYR TRP VAL GLU ASP VAL GLU SEQRES 4 B 490 GLY SER ILE PRO PRO ASP LEU GLN GLY THR LEU TYR ARG SEQRES 5 B 490 ASN GLY PRO GLY LEU LEU GLU ILE GLY ASP ARG PRO LEU SEQRES 6 B 490 LYS HIS PRO PHE ASP GLY ASP GLY MET VAL THR ALA PHE SEQRES 7 B 490 LYS PHE PRO GLY ASP GLY ARG VAL HIS PHE GLN SER LYS SEQRES 8 B 490 PHE VAL ARG THR GLN GLY TYR VAL GLU GLU GLN LYS ALA SEQRES 9 B 490 GLY LYS MET ILE TYR ARG GLY VAL PHE GLY SER GLN PRO SEQRES 10 B 490 ALA GLY GLY TRP LEU LYS THR ILE PHE ASP LEU ARG LEU SEQRES 11 B 490 LYS ASN ILE ALA ASN THR ASN ILE THR TYR TRP GLY ASP SEQRES 12 B 490 ARG LEU LEU ALA LEU TRP GLU GLY GLY GLN PRO HIS ARG SEQRES 13 B 490 LEU GLU PRO SER ASN LEU ALA THR ILE GLY LEU ASP ASP SEQRES 14 B 490 LEU GLY GLY ILE LEU ALA GLU GLY GLN PRO LEU SER ALA SEQRES 15 B 490 HIS PRO ARG ILE ASP PRO ALA SER THR PHE ASP GLY GLY SEQRES 16 B 490 GLN PRO CYS TYR VAL THR PHE SER ILE LYS SER SER LEU SEQRES 17 B 490 SER SER THR LEU THR LEU LEU GLU LEU ASP PRO GLN GLY SEQRES 18 B 490 LYS LEU LEU ARG GLN LYS THR GLU THR PHE PRO GLY PHE SEQRES 19 B 490 ALA PHE ILE HIS ASP PHE ALA ILE THR PRO HIS TYR ALA SEQRES 20 B 490 ILE PHE LEU GLN ASN ASN VAL THR LEU ASN GLY LEU PRO SEQRES 21 B 490 TYR LEU PHE GLY LEU ARG GLY ALA GLY GLU CYS VAL GLN SEQRES 22 B 490 PHE HIS PRO ASP LYS PRO ALA GLN ILE ILE LEU VAL PRO SEQRES 23 B 490 ARG ASP GLY GLY GLU ILE LYS ARG ILE PRO VAL GLN ALA SEQRES 24 B 490 GLY PHE VAL PHE HIS HIS ALA ASN ALA PHE GLU GLU ASN SEQRES 25 B 490 GLY LYS ILE ILE LEU ASP SER ILE CYS TYR ASN SER LEU SEQRES 26 B 490 PRO GLN VAL ASP THR ASP GLY ASP PHE ARG SER THR ASN SEQRES 27 B 490 PHE ASP ASN LEU ASP PRO GLY GLN LEU TRP ARG PHE THR SEQRES 28 B 490 ILE ASP PRO ALA ALA ALA THR VAL GLU LYS GLN LEU MET SEQRES 29 B 490 VAL SER ARG CYS CYS GLU PHE PRO VAL VAL HIS PRO GLN SEQRES 30 B 490 GLN VAL GLY ARG PRO TYR ARG TYR VAL TYR MET GLY ALA SEQRES 31 B 490 ALA HIS HIS SER THR GLY ASN ALA PRO LEU GLN ALA ILE SEQRES 32 B 490 LEU LYS VAL ASP LEU GLU SER GLY THR GLU THR LEU ARG SEQRES 33 B 490 SER PHE ALA PRO HIS GLY PHE ALA GLY GLU PRO ILE PHE SEQRES 34 B 490 VAL PRO ARG PRO GLY GLY VAL ALA GLU ASP ASP GLY TRP SEQRES 35 B 490 LEU LEU CYS LEU ILE TYR LYS ALA ASP LEU HIS ARG SER SEQRES 36 B 490 GLU LEU VAL ILE LEU ASP ALA GLN ASP ILE THR ALA PRO SEQRES 37 B 490 ALA ILE ALA THR LEU LYS LEU LYS HIS HIS ILE PRO TYR SEQRES 38 B 490 PRO LEU HIS GLY SER TRP ALA GLN THR HET C8E A1491 21 HET C8E B1491 21 HET GOL A1492 6 HET GOL A1493 6 HETNAM C8E (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE HETNAM GOL GLYCEROL FORMUL 3 C8E 2(C16 H34 O5) FORMUL 5 GOL 2(C3 H8 O3) FORMUL 7 HOH *114(H2 O1) HELIX 1 1 SER A 16 GLY A 23 1 8 HELIX 2 2 HIS A 67 GLY A 71 5 5 HELIX 3 3 THR A 95 ALA A 104 1 10 HELIX 4 4 GLY A 120 ILE A 125 1 6 HELIX 5 5 SER A 190 GLY A 194 5 5 HELIX 6 6 GLY A 258 PHE A 263 1 6 HELIX 7 7 GLY A 267 GLU A 270 5 4 HELIX 8 8 ASP A 333 THR A 337 5 5 HELIX 9 9 ASN A 338 LEU A 342 5 5 HELIX 10 10 HIS A 375 VAL A 379 5 5 HELIX 11 11 SER B 16 GLY B 23 1 8 HELIX 12 12 HIS B 67 GLY B 71 5 5 HELIX 13 13 THR B 95 GLY B 105 1 11 HELIX 14 14 GLY B 120 ILE B 125 1 6 HELIX 15 15 GLY B 258 PHE B 263 1 6 HELIX 16 16 GLY B 267 GLU B 270 5 4 HELIX 17 17 ASP B 333 THR B 337 5 5 HELIX 18 18 ASN B 338 LEU B 342 5 5 HELIX 19 19 HIS B 375 VAL B 379 5 5 SHEET 1 AA 5 TRP A 31 TRP A 34 0 SHEET 2 AA 5 HIS A 87 PHE A 92 -1 O PHE A 88 N TYR A 33 SHEET 3 AA 5 MET A 74 PHE A 80 -1 O VAL A 75 N LYS A 91 SHEET 4 AA 5 GLY A 48 ARG A 52 -1 O GLY A 48 N PHE A 80 SHEET 5 AA 5 GLY A 485 GLN A 489 -1 O SER A 486 N TYR A 51 SHEET 1 AB 5 VAL A 38 GLY A 40 0 SHEET 2 AB 5 ALA A 471 LYS A 474 -1 O THR A 472 N GLU A 39 SHEET 3 AB 5 ARG A 454 ASP A 461 -1 O LEU A 457 N LEU A 473 SHEET 4 AB 5 GLY A 441 LYS A 449 -1 O LEU A 443 N LEU A 460 SHEET 5 AB 5 GLY A 422 PHE A 423 -1 O PHE A 423 N TYR A 448 SHEET 1 AC 5 VAL A 38 GLY A 40 0 SHEET 2 AC 5 ALA A 471 LYS A 474 -1 O THR A 472 N GLU A 39 SHEET 3 AC 5 ARG A 454 ASP A 461 -1 O LEU A 457 N LEU A 473 SHEET 4 AC 5 GLY A 441 LYS A 449 -1 O LEU A 443 N LEU A 460 SHEET 5 AC 5 PRO A 427 PRO A 431 -1 O ILE A 428 N LEU A 444 SHEET 1 AD 2 GLU A 59 ILE A 60 0 SHEET 2 AD 2 ARG A 63 PRO A 64 -1 O ARG A 63 N ILE A 60 SHEET 1 AE 4 ASN A 137 TYR A 140 0 SHEET 2 AE 4 LEU A 145 LEU A 148 -1 O LEU A 146 N THR A 139 SHEET 3 AE 4 HIS A 155 GLU A 158 -1 O HIS A 155 N ALA A 147 SHEET 4 AE 4 ALA A 163 LEU A 167 -1 O ALA A 163 N GLU A 158 SHEET 1 AF 4 ARG A 185 ASP A 187 0 SHEET 2 AF 4 CYS A 198 SER A 203 -1 O CYS A 198 N ASP A 187 SHEET 3 AF 4 SER A 209 LEU A 217 -1 O THR A 213 N SER A 203 SHEET 4 AF 4 LEU A 223 PRO A 232 -1 N LEU A 224 O GLU A 216 SHEET 1 AG 4 ALA A 241 ILE A 242 0 SHEET 2 AG 4 TYR A 246 GLN A 251 -1 O ILE A 248 N ALA A 241 SHEET 3 AG 4 ALA A 280 PRO A 286 -1 O GLN A 281 N GLN A 251 SHEET 4 AG 4 LYS A 293 VAL A 297 -1 O LYS A 293 N LEU A 284 SHEET 1 AH 2 VAL A 254 LEU A 256 0 SHEET 2 AH 2 VAL A 272 PHE A 274 -1 O GLN A 273 N THR A 255 SHEET 1 AI 4 PHE A 301 GLU A 311 0 SHEET 2 AI 4 LYS A 314 TYR A 322 -1 O LYS A 314 N GLU A 311 SHEET 3 AI 4 GLN A 346 ASP A 353 -1 O GLN A 346 N CYS A 321 SHEET 4 AI 4 THR A 358 VAL A 365 -1 O THR A 358 N ASP A 353 SHEET 1 AJ 4 CYS A 369 VAL A 373 0 SHEET 2 AJ 4 TYR A 385 ALA A 390 -1 O TYR A 387 N VAL A 373 SHEET 3 AJ 4 ALA A 402 ASP A 407 -1 O ALA A 402 N ALA A 390 SHEET 4 AJ 4 GLU A 413 SER A 417 -1 O THR A 414 N LYS A 405 SHEET 1 BA 5 TRP B 31 TRP B 34 0 SHEET 2 BA 5 HIS B 87 PHE B 92 -1 O PHE B 88 N TYR B 33 SHEET 3 BA 5 ASP B 72 PHE B 80 -1 O VAL B 75 N LYS B 91 SHEET 4 BA 5 GLY B 48 LEU B 57 -1 O GLY B 48 N PHE B 80 SHEET 5 BA 5 GLY B 485 GLN B 489 -1 O SER B 486 N TYR B 51 SHEET 1 BB 5 VAL B 38 GLY B 40 0 SHEET 2 BB 5 ALA B 471 LYS B 474 -1 O THR B 472 N GLU B 39 SHEET 3 BB 5 ARG B 454 ASP B 461 -1 O LEU B 457 N LEU B 473 SHEET 4 BB 5 GLY B 441 LYS B 449 -1 O LEU B 443 N LEU B 460 SHEET 5 BB 5 GLY B 422 PHE B 423 -1 O PHE B 423 N TYR B 448 SHEET 1 BC 5 VAL B 38 GLY B 40 0 SHEET 2 BC 5 ALA B 471 LYS B 474 -1 O THR B 472 N GLU B 39 SHEET 3 BC 5 ARG B 454 ASP B 461 -1 O LEU B 457 N LEU B 473 SHEET 4 BC 5 GLY B 441 LYS B 449 -1 O LEU B 443 N LEU B 460 SHEET 5 BC 5 ILE B 428 PRO B 431 -1 O ILE B 428 N LEU B 444 SHEET 1 BD 2 GLU B 59 ILE B 60 0 SHEET 2 BD 2 ARG B 63 PRO B 64 -1 O ARG B 63 N ILE B 60 SHEET 1 BE 4 ASN B 137 TYR B 140 0 SHEET 2 BE 4 LEU B 145 LEU B 148 -1 O LEU B 146 N THR B 139 SHEET 3 BE 4 HIS B 155 LEU B 157 -1 O HIS B 155 N ALA B 147 SHEET 4 BE 4 THR B 164 LEU B 167 -1 N ILE B 165 O ARG B 156 SHEET 1 BF 4 ARG B 185 ASP B 187 0 SHEET 2 BF 4 CYS B 198 SER B 206 -1 O CYS B 198 N ASP B 187 SHEET 3 BF 4 SER B 209 LEU B 217 -1 O THR B 211 N LYS B 205 SHEET 4 BF 4 LEU B 223 PRO B 232 -1 N LEU B 224 O GLU B 216 SHEET 1 BG 4 ALA B 241 ILE B 242 0 SHEET 2 BG 4 TYR B 246 GLN B 251 -1 O ILE B 248 N ALA B 241 SHEET 3 BG 4 ALA B 280 PRO B 286 -1 O GLN B 281 N GLN B 251 SHEET 4 BG 4 LYS B 293 VAL B 297 -1 O LYS B 293 N LEU B 284 SHEET 1 BH 2 VAL B 254 LEU B 256 0 SHEET 2 BH 2 VAL B 272 PHE B 274 -1 O GLN B 273 N THR B 255 SHEET 1 BI 4 PHE B 301 GLU B 311 0 SHEET 2 BI 4 LYS B 314 TYR B 322 -1 O LYS B 314 N GLU B 311 SHEET 3 BI 4 GLY B 345 ASP B 353 -1 O GLN B 346 N CYS B 321 SHEET 4 BI 4 THR B 358 VAL B 365 -1 O THR B 358 N ASP B 353 SHEET 1 BJ 4 CYS B 369 VAL B 373 0 SHEET 2 BJ 4 TYR B 385 ALA B 390 -1 O TYR B 387 N VAL B 373 SHEET 3 BJ 4 ALA B 402 ASP B 407 -1 O ALA B 402 N ALA B 390 SHEET 4 BJ 4 GLU B 413 SER B 417 -1 O THR B 414 N LYS B 405 CISPEP 1 ALA A 419 PRO A 420 0 4.93 CISPEP 2 ALA B 419 PRO B 420 0 5.04 SITE 1 AC1 6 PHE A 69 PHE A 113 HIS A 238 PHE A 303 SITE 2 AC1 6 HIS A 304 LEU A 483 SITE 1 AC2 5 PHE B 69 GLU B 150 HIS B 238 HIS B 304 SITE 2 AC2 5 LEU B 483 SITE 1 AC3 5 SER A 324 ASP A 340 ASN A 341 LEU A 342 SITE 2 AC3 5 ASP A 343 SITE 1 AC4 6 TRP A 20 TYR A 24 LEU A 400 PHE A 423 SITE 2 AC4 6 ALA A 424 HOH A2047 CRYST1 122.928 122.928 205.560 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008135 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008135 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004865 0.00000 MTRIX1 1 0.359630 -0.207980 0.909620 -107.39350 1 MTRIX2 1 -0.552650 0.737990 0.387240 36.98290 1 MTRIX3 1 -0.751820 -0.641970 0.150460 140.26820 1