HEADER    TRANSFERASE                             26-JAN-05   2BIY              
TITLE     STRUCTURE OF PDK1-S241A MUTANT KINASE DOMAIN                          
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: 3-PHOSPHOINOSITIDE DEPENDENT PROTEIN KINASE-1;             
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: RESIDUES 51-360 (KINASE DOMAIN);                           
COMPND   5 SYNONYM: HPDK1;                                                      
COMPND   6 EC: 2.7.1.37;                                                        
COMPND   7 ENGINEERED: YES;                                                     
COMPND   8 MUTATION: YES;                                                       
COMPND   9 OTHER_DETAILS: T-LOOP MUTANT SER241ALA                               
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA;                            
SOURCE   6 EXPRESSION_SYSTEM_TAXID: 7108;                                       
SOURCE   7 EXPRESSION_SYSTEM_CELL_LINE: SF21;                                   
SOURCE   8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS                           
KEYWDS    AGC KINASE, AC-HELIX, ATP-BINDING, PHOSPHORYLATION, PHOSPHOINOSITIDE  
KEYWDS   2 DEPENDENT PROTEIN KINASE, PI3-KINASE SIGNALLING, PIF-POCKET, PKA,    
KEYWDS   3 PKB, T-LOOP MUTANT, SERINE-THREONINE-PROTEIN KINASE, TRANSFERASE     
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    D.KOMANDER,G.S.KULAR,M.DEAK,D.R.ALESSI,D.M.F.VAN AALTEN               
REVDAT   6   13-DEC-23 2BIY    1       REMARK                                   
REVDAT   5   03-APR-19 2BIY    1       SOURCE                                   
REVDAT   4   19-DEC-18 2BIY    1       AUTHOR JRNL   REMARK LINK                
REVDAT   3   24-FEB-09 2BIY    1       VERSN                                    
REVDAT   2   12-JUL-05 2BIY    1       JRNL   REMARK                            
REVDAT   1   23-FEB-05 2BIY    0                                                
JRNL        AUTH   D.KOMANDER,G.KULAR,M.DEAK,D.R.ALESSI,D.M.VAN AALTEN          
JRNL        TITL   ROLE OF T-LOOP PHOSPHORYLATION IN PDK1 ACTIVATION,           
JRNL        TITL 2 STABILITY, AND SUBSTRATE BINDING.                            
JRNL        REF    J. BIOL. CHEM.                V. 280 18797 2005              
JRNL        REFN                   ISSN 0021-9258                               
JRNL        PMID   15741170                                                     
JRNL        DOI    10.1074/JBC.M500977200                                       
REMARK   2                                                                      
REMARK   2 RESOLUTION.    1.95 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : REFMAC 5.1.24                                        
REMARK   3   AUTHORS     : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,              
REMARK   3               : NICHOLLS,WINN,LONG,VAGIN                             
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : MAXIMUM LIKELIHOOD                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 25.00                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : NULL                           
REMARK   3   COMPLETENESS FOR RANGE        (%) : 94.4                           
REMARK   3   NUMBER OF REFLECTIONS             : 27210                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.186                           
REMARK   3   R VALUE            (WORKING SET) : 0.185                           
REMARK   3   FREE R VALUE                     : 0.230                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 2.100                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 588                             
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : 20                           
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 1.95                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 2.00                         
REMARK   3   REFLECTION IN BIN     (WORKING SET) : 1452                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : NULL                         
REMARK   3   BIN R VALUE           (WORKING SET) : 0.2660                       
REMARK   3   BIN FREE R VALUE SET COUNT          : 31                           
REMARK   3   BIN FREE R VALUE                    : 0.3810                       
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 2301                                    
REMARK   3   NUCLEIC ACID ATOMS       : 0                                       
REMARK   3   HETEROGEN ATOMS          : 108                                     
REMARK   3   SOLVENT ATOMS            : 166                                     
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : NULL                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 26.49                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : 1.53000                                              
REMARK   3    B22 (A**2) : 1.53000                                              
REMARK   3    B33 (A**2) : -2.29000                                             
REMARK   3    B12 (A**2) : 0.76000                                              
REMARK   3    B13 (A**2) : 0.00000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED OVERALL COORDINATE ERROR.                                 
REMARK   3   ESU BASED ON R VALUE                            (A): 0.146         
REMARK   3   ESU BASED ON FREE R VALUE                       (A): 0.142         
REMARK   3   ESU BASED ON MAXIMUM LIKELIHOOD                 (A): 0.097         
REMARK   3   ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL          
REMARK   3                                                                      
REMARK   3 CORRELATION COEFFICIENTS.                                            
REMARK   3   CORRELATION COEFFICIENT FO-FC      : 0.947                         
REMARK   3   CORRELATION COEFFICIENT FO-FC FREE : 0.919                         
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES        COUNT    RMS    WEIGHT      
REMARK   3   BOND LENGTHS REFINED ATOMS        (A):  2478 ; 0.014 ; 0.022       
REMARK   3   BOND LENGTHS OTHERS               (A):  2197 ; 0.002 ; 0.020       
REMARK   3   BOND ANGLES REFINED ATOMS   (DEGREES):  3350 ; 1.512 ; 2.003       
REMARK   3   BOND ANGLES OTHERS          (DEGREES):  5130 ; 0.867 ; 3.000       
REMARK   3   TORSION ANGLES, PERIOD 1    (DEGREES):   286 ; 5.663 ; 5.000       
REMARK   3   TORSION ANGLES, PERIOD 2    (DEGREES):  NULL ;  NULL ;  NULL       
REMARK   3   TORSION ANGLES, PERIOD 3    (DEGREES):  NULL ;  NULL ;  NULL       
REMARK   3   TORSION ANGLES, PERIOD 4    (DEGREES):  NULL ;  NULL ;  NULL       
REMARK   3   CHIRAL-CENTER RESTRAINTS       (A**3):   365 ; 0.091 ; 0.200       
REMARK   3   GENERAL PLANES REFINED ATOMS      (A):  2616 ; 0.007 ; 0.020       
REMARK   3   GENERAL PLANES OTHERS             (A):   498 ; 0.004 ; 0.020       
REMARK   3   NON-BONDED CONTACTS REFINED ATOMS (A):   503 ; 0.208 ; 0.200       
REMARK   3   NON-BONDED CONTACTS OTHERS        (A):  2607 ; 0.252 ; 0.200       
REMARK   3   NON-BONDED TORSION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION OTHERS         (A):  1416 ; 0.084 ; 0.200       
REMARK   3   H-BOND (X...Y) REFINED ATOMS      (A):   157 ; 0.148 ; 0.200       
REMARK   3   H-BOND (X...Y) OTHERS             (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW REFINED ATOMS        (A):    46 ; 0.758 ; 0.200       
REMARK   3   SYMMETRY VDW OTHERS               (A):    73 ; 0.335 ; 0.200       
REMARK   3   SYMMETRY H-BOND REFINED ATOMS     (A):    13 ; 0.284 ; 0.200       
REMARK   3   SYMMETRY H-BOND OTHERS            (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.     COUNT   RMS    WEIGHT      
REMARK   3   MAIN-CHAIN BOND REFINED ATOMS  (A**2):  1440 ; 0.909 ; 1.500       
REMARK   3   MAIN-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   MAIN-CHAIN ANGLE REFINED ATOMS (A**2):  2327 ; 1.676 ; 2.000       
REMARK   3   MAIN-CHAIN ANGLE OTHER ATOMS   (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN BOND REFINED ATOMS  (A**2):  1038 ; 2.508 ; 3.000       
REMARK   3   SIDE-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN ANGLE REFINED ATOMS (A**2):  1023 ; 4.033 ; 4.500       
REMARK   3   SIDE-CHAIN ANGLE OTHER ATOMS   (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   LONG RANGE B REFINED ATOMS     (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   LONG RANGE B OTHER ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3 ANISOTROPIC THERMAL FACTOR RESTRAINTS.    COUNT   RMS   WEIGHT       
REMARK   3   RIGID-BOND RESTRAINTS          (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; FREE ATOMS         (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; BONDED ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS STATISTICS                                           
REMARK   3   NUMBER OF DIFFERENT NCS GROUPS : NULL                              
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : NULL                                       
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED : BABINET MODEL WITH MASK                              
REMARK   3   PARAMETERS FOR MASK CALCULATION                                    
REMARK   3   VDW PROBE RADIUS   : 1.40                                          
REMARK   3   ION PROBE RADIUS   : 0.80                                          
REMARK   3   SHRINKAGE RADIUS   : 0.80                                          
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING   
REMARK   3  POSITIONS. RESIDUES 51-71 ARE DISORDERED. UNIDENTIFIED ELECTRON     
REMARK   3  DENSITY NEAR THE T-LOOP. RESIDUES LACKING SIDE-CHAIN ELECTRON       
REMARK   3  DENSITY HAVE BEEN REFINED WITH OCCU=0.0 OR HAVE BEEN REFINED AS     
REMARK   3  ALA RESIDUES.                                                       
REMARK   4                                                                      
REMARK   4 2BIY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-JAN-05.                  
REMARK 100 THE DEPOSITION ID IS D_1290022697.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 04-FEB-03                          
REMARK 200  TEMPERATURE           (KELVIN) : 100.0                              
REMARK 200  PH                             : 7.50                               
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : ESRF                               
REMARK 200  BEAMLINE                       : ID14-1                             
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 0.934                              
REMARK 200  MONOCHROMATOR                  : NULL                               
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : ADSC CCD                           
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : DENZO                              
REMARK 200  DATA SCALING SOFTWARE          : SCALEPACK                          
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 28782                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 1.950                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 25.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : 2.000                              
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 90.5                               
REMARK 200  DATA REDUNDANCY                : 4.300                              
REMARK 200  R MERGE                    (I) : 0.08000                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 14.2000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 2.02                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 99.2                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 3.00                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.42000                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 2.300                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: CNS                                                   
REMARK 200 STARTING MODEL: PDB ENTRY 1H1W                                       
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 0.57                                      
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 2.2 M AMMONIUM SULPHATE, 0.1 M TRIS      
REMARK 280  PH7.5, PH 7.50                                                      
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1                         
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -Y,X-Y,Z+2/3                                            
REMARK 290       3555   -X+Y,-X,Z+1/3                                           
REMARK 290       4555   Y,X,-Z                                                  
REMARK 290       5555   X-Y,-Y,-Z+1/3                                           
REMARK 290       6555   -X,-X+Y,-Z+2/3                                          
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       31.83333            
REMARK 290   SMTRY1   3 -0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   3 -0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   3  0.000000  0.000000  1.000000       15.91667            
REMARK 290   SMTRY1   4 -0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   4  0.866025  0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY1   5  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   5  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   5  0.000000  0.000000 -1.000000       15.91667            
REMARK 290   SMTRY1   6 -0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   6 -0.866025  0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   6  0.000000  0.000000 -1.000000       31.83333            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC                  
REMARK 350 SOFTWARE USED: PQS                                                   
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 400                                                                      
REMARK 400 COMPOUND                                                             
REMARK 400 FUNCTION: PHOSPHORYLATES AND ACTIVATES PKB/AKT, PKA,                 
REMARK 400  PKC-ZETA, P70S6K AND P90S6K/RSK.                                    
REMARK 400 ENGINEERED MUTATION IN CHAIN A SER 241 TO ALA                        
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     MET A    51                                                      
REMARK 465     ASP A    52                                                      
REMARK 465     GLY A    53                                                      
REMARK 465     THR A    54                                                      
REMARK 465     ALA A    55                                                      
REMARK 465     ALA A    56                                                      
REMARK 465     GLU A    57                                                      
REMARK 465     PRO A    58                                                      
REMARK 465     ARG A    59                                                      
REMARK 465     PRO A    60                                                      
REMARK 465     GLY A    61                                                      
REMARK 465     ALA A    62                                                      
REMARK 465     GLY A    63                                                      
REMARK 465     SER A    64                                                      
REMARK 465     LEU A    65                                                      
REMARK 465     GLN A    66                                                      
REMARK 465     HIS A    67                                                      
REMARK 465     ALA A    68                                                      
REMARK 465     GLN A    69                                                      
REMARK 465     PRO A    70                                                      
REMARK 465     PRO A    71                                                      
REMARK 465     ALA A   360                                                      
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470     GLN A  73    CG   CD   OE1  NE2                                  
REMARK 470     ARG A  75    CG   CD   NE   CZ   NH1  NH2                        
REMARK 470     GLU A 153    CG   CD   OE1  OE2                                  
REMARK 470     LYS A 228    CG   CD   CE   NZ                                   
REMARK 470     ARG A 238    CG   CD   NE   CZ   NH1  NH2                        
REMARK 470     LYS A 304    CG   CD   CE   NZ                                   
REMARK 470     GLU A 343    CG   CD   OE1  OE2                                  
REMARK 470     GLU A 348    CG   CD   OE1  OE2                                  
REMARK 470     LYS A 357    CG   CD   CE   NZ                                   
REMARK 470     THR A 359    CA   C    O    CB   OG1  CG2                        
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC             
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT.  AN ATOM LOCATED WITHIN 0.15          
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A           
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375             
REMARK 500 INSTEAD OF REMARK 500.  ATOMS WITH NON-BLANK ALTERNATE               
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.            
REMARK 500                                                                      
REMARK 500 DISTANCE CUTOFF:                                                     
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS              
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS                  
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI  SSYMOP   DISTANCE          
REMARK 500   S    SO4 A  1367     O3   SO4 A  1367     4556     0.99            
REMARK 500   O3   SO4 A  1367     O4   SO4 A  1367     4556     1.24            
REMARK 500   O2   SO4 A  1367     O3   SO4 A  1367     4556     1.43            
REMARK 500   O1   SO4 A  1367     O2   SO4 A  1367     4556     1.43            
REMARK 500   S    SO4 A  1367     O2   SO4 A  1367     4556     1.60            
REMARK 500   O1   GOL A  1360     O1   GOL A  1362     1554     1.69            
REMARK 500   OE1  GLU A   303     OE1  GLU A   303     5675     1.70            
REMARK 500   O1   SO4 A  1367     O3   SO4 A  1367     4556     1.79            
REMARK 500   S    SO4 A  1367     O4   SO4 A  1367     4556     1.82            
REMARK 500   S    SO4 A  1367     O1   SO4 A  1367     4556     1.84            
REMARK 500   O4   SO4 A  1367     O4   SO4 A  1367     4556     1.95            
REMARK 500   O2   GOL A  1360     O2   GOL A  1362     1554     2.04            
REMARK 500   NZ   LYS A   144     O4   SO4 A  1367     4556     2.08            
REMARK 500   O3   GOL A  1360     O3   GOL A  1362     1554     2.10            
REMARK 500   C1   GOL A  1360     O1   GOL A  1362     1554     2.14            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500    ASP A 138   CB  -  CG  -  OD2 ANGL. DEV. =   5.8 DEGREES          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    ASP A 151     -157.83   -114.27                                   
REMARK 500    ARG A 204      -11.09     78.44                                   
REMARK 500    ASP A 205       41.93   -141.36                                   
REMARK 500    ASP A 223       67.67     82.91                                   
REMARK 500    ASN A 349       46.19   -144.66                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1366                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1367                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1368                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC4                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1369                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC5                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1370                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC6                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1371                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC7                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1372                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC8                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A1373                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC9                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1359                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: BC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1360                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: BC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1361                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: BC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1362                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: BC4                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1363                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: BC5                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1364                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: BC6                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1365                 
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 1H1W   RELATED DB: PDB                                   
REMARK 900 HIGH RESOLUTION CRYSTAL STRUCTURE OF THE HUMAN PDK1 CATALYTIC DOMAIN 
REMARK 900 RELATED ID: 1OKY   RELATED DB: PDB                                   
REMARK 900 STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH STAUROSPORINE  
REMARK 900 RELATED ID: 1OKZ   RELATED DB: PDB                                   
REMARK 900 STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH UCN-01         
REMARK 900 RELATED ID: 1UU3   RELATED DB: PDB                                   
REMARK 900 STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH LY333531       
REMARK 900 RELATED ID: 1UU7   RELATED DB: PDB                                   
REMARK 900 STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH BIM-2          
REMARK 900 RELATED ID: 1UU8   RELATED DB: PDB                                   
REMARK 900 STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH BIM-1          
REMARK 900 RELATED ID: 1UU9   RELATED DB: PDB                                   
REMARK 900 STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH BIM-3          
REMARK 900 RELATED ID: 1UVR   RELATED DB: PDB                                   
REMARK 900 STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH BIM-8          
REMARK 900 RELATED ID: 1W1D   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF THE PDK1 PLECKSTRIN HOMOLOGY (PH) DOMAIN BOUND  
REMARK 900 TO INOSITOL (1, 3,4,5)-TETRAKISPHOSPHATE                             
REMARK 900 RELATED ID: 1W1G   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF THE PDK1 PLECKSTRIN HOMOLOGY (PH) DOMAIN BOUND  
REMARK 900 TO DIC4- PHOSPHATIDYLINOSITOL (3,4,5)-TRISPHOSPHATE                  
REMARK 900 RELATED ID: 1W1H   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF THE PDK1 PLECKSTRIN HOMOLOGY (PH) DOMAIN        
REMARK 999                                                                      
REMARK 999 SEQUENCE                                                             
REMARK 999 SER241ALA MUTANT                                                     
DBREF  2BIY A   51   360  UNP    O15530   PDPK_HUMAN      51    360             
SEQADV 2BIY ALA A  241  UNP  O15530    SER   241 ENGINEERED MUTATION            
SEQRES   1 A  310  MET ASP GLY THR ALA ALA GLU PRO ARG PRO GLY ALA GLY          
SEQRES   2 A  310  SER LEU GLN HIS ALA GLN PRO PRO PRO GLN PRO ARG LYS          
SEQRES   3 A  310  LYS ARG PRO GLU ASP PHE LYS PHE GLY LYS ILE LEU GLY          
SEQRES   4 A  310  GLU GLY SER PHE SER THR VAL VAL LEU ALA ARG GLU LEU          
SEQRES   5 A  310  ALA THR SER ARG GLU TYR ALA ILE LYS ILE LEU GLU LYS          
SEQRES   6 A  310  ARG HIS ILE ILE LYS GLU ASN LYS VAL PRO TYR VAL THR          
SEQRES   7 A  310  ARG GLU ARG ASP VAL MET SER ARG LEU ASP HIS PRO PHE          
SEQRES   8 A  310  PHE VAL LYS LEU TYR PHE THR PHE GLN ASP ASP GLU LYS          
SEQRES   9 A  310  LEU TYR PHE GLY LEU SER TYR ALA LYS ASN GLY GLU LEU          
SEQRES  10 A  310  LEU LYS TYR ILE ARG LYS ILE GLY SER PHE ASP GLU THR          
SEQRES  11 A  310  CYS THR ARG PHE TYR THR ALA GLU ILE VAL SER ALA LEU          
SEQRES  12 A  310  GLU TYR LEU HIS GLY LYS GLY ILE ILE HIS ARG ASP LEU          
SEQRES  13 A  310  LYS PRO GLU ASN ILE LEU LEU ASN GLU ASP MET HIS ILE          
SEQRES  14 A  310  GLN ILE THR ASP PHE GLY THR ALA LYS VAL LEU SER PRO          
SEQRES  15 A  310  GLU SER LYS GLN ALA ARG ALA ASN ALA PHE VAL GLY THR          
SEQRES  16 A  310  ALA GLN TYR VAL SER PRO GLU LEU LEU THR GLU LYS SER          
SEQRES  17 A  310  ALA CYS LYS SER SER ASP LEU TRP ALA LEU GLY CYS ILE          
SEQRES  18 A  310  ILE TYR GLN LEU VAL ALA GLY LEU PRO PRO PHE ARG ALA          
SEQRES  19 A  310  GLY ASN GLU TYR LEU ILE PHE GLN LYS ILE ILE LYS LEU          
SEQRES  20 A  310  GLU TYR ASP PHE PRO GLU LYS PHE PHE PRO LYS ALA ARG          
SEQRES  21 A  310  ASP LEU VAL GLU LYS LEU LEU VAL LEU ASP ALA THR LYS          
SEQRES  22 A  310  ARG LEU GLY CYS GLU GLU MET GLU GLY TYR GLY PRO LEU          
SEQRES  23 A  310  LYS ALA HIS PRO PHE PHE GLU SER VAL THR TRP GLU ASN          
SEQRES  24 A  310  LEU HIS GLN GLN THR PRO PRO LYS LEU THR ALA                  
HET    GOL  A1359       6                                                       
HET    GOL  A1360       6                                                       
HET    GOL  A1361       6                                                       
HET    GOL  A1362       6                                                       
HET    GOL  A1363       6                                                       
HET    GOL  A1364       6                                                       
HET    GOL  A1365       6                                                       
HET    SO4  A1366       5                                                       
HET    SO4  A1367       5                                                       
HET    SO4  A1368       5                                                       
HET    SO4  A1369       5                                                       
HET    SO4  A1370       5                                                       
HET    SO4  A1371       5                                                       
HET    SO4  A1372       5                                                       
HET    ATP  A1373      31                                                       
HETNAM     GOL GLYCEROL                                                         
HETNAM     SO4 SULFATE ION                                                      
HETNAM     ATP ADENOSINE-5'-TRIPHOSPHATE                                        
HETSYN     GOL GLYCERIN; PROPANE-1,2,3-TRIOL                                    
FORMUL   2  GOL    7(C3 H8 O3)                                                  
FORMUL   9  SO4    7(O4 S 2-)                                                   
FORMUL  16  ATP    C10 H16 N5 O13 P3                                            
FORMUL  17  HOH   *166(H2 O)                                                    
HELIX    1   1 ARG A   78  GLU A   80  5                                   3    
HELIX    2   2 LYS A  115  GLU A  121  1                                   7    
HELIX    3   3 LYS A  123  LEU A  137  1                                  15    
HELIX    4   4 LEU A  167  GLY A  175  1                                   9    
HELIX    5   5 ASP A  178  LYS A  199  1                                  22    
HELIX    6   6 THR A  245  VAL A  249  5                                   5    
HELIX    7   7 SER A  250  GLU A  256  1                                   7    
HELIX    8   8 LYS A  261  GLY A  278  1                                  18    
HELIX    9   9 ASN A  286  LYS A  296  1                                  11    
HELIX   10  10 PHE A  306  LEU A  317  1                                  12    
HELIX   11  11 ASP A  320  ARG A  324  5                                   5    
HELIX   12  12 CYS A  327  GLU A  331  5                                   5    
HELIX   13  13 GLY A  332  ALA A  338  1                                   7    
HELIX   14  14 HIS A  339  GLU A  343  5                                   5    
HELIX   15  15 ASN A  349  GLN A  353  5                                   5    
SHEET    1  AA 5 PHE A  82  GLU A  90  0                                        
SHEET    2  AA 5 THR A  95  GLU A 101 -1  O  VAL A  96   N  LEU A  88           
SHEET    3  AA 5 GLU A 107  GLU A 114 -1  O  TYR A 108   N  ALA A  99           
SHEET    4  AA 5 LYS A 154  LEU A 159 -1  O  LEU A 155   N  LEU A 113           
SHEET    5  AA 5 LEU A 145  GLN A 150 -1  N  TYR A 146   O  GLY A 158           
SHEET    1  AB 3 GLY A 165  GLU A 166  0                                        
SHEET    2  AB 3 ILE A 211  LEU A 213 -1  N  LEU A 213   O  GLY A 165           
SHEET    3  AB 3 ILE A 219  ILE A 221 -1  O  GLN A 220   N  LEU A 212           
SHEET    1  AC 2 ILE A 201  ILE A 202  0                                        
SHEET    2  AC 2 LYS A 228  VAL A 229 -1  O  LYS A 228   N  ILE A 202           
SHEET    1  AD 2 GLN A 236  ARG A 238  0                                        
SHEET    2  AD 2 SER A 258  CYS A 260 -1  O  ALA A 259   N  ALA A 237           
SITE     1 AC1  5 LYS A  83  VAL A 345  THR A 346  TRP A 347                    
SITE     2 AC1  5 GLU A 348                                                     
SITE     1 AC2  2 LYS A 144  TYR A 146                                          
SITE     1 AC3  3 ARG A  75  ARG A 136  LYS A 199                               
SITE     1 AC4  5 LYS A  76  ARG A 131  THR A 148  PHE A 149                    
SITE     2 AC4  5 GLN A 150                                                     
SITE     1 AC5  4 ARG A 106  PRO A 140  HIS A 351  GOL A1359                    
SITE     1 AC6  6 TYR A 146  SER A 160  GLN A 220  GOL A1359                    
SITE     2 AC6  6 HOH A2051  HOH A2161                                          
SITE     1 AC7  2 ARG A 310  HOH A2162                                          
SITE     1 AC8 18 GLY A  89  GLY A  91  SER A  92  SER A  94                    
SITE     2 AC8 18 VAL A  96  ALA A 109  LYS A 111  SER A 160                    
SITE     3 AC8 18 ALA A 162  GLU A 166  LEU A 212  GOL A1361                    
SITE     4 AC8 18 HOH A2084  HOH A2160  HOH A2163  HOH A2164                    
SITE     5 AC8 18 HOH A2165  HOH A2166                                          
SITE     1 AC9  7 ARG A 106  GLU A 107  SER A 160  TYR A 161                    
SITE     2 AC9  7 SO4 A1370  SO4 A1371  HOH A2051                               
SITE     1 BC1  9 PHE A  84  GLU A 194  TYR A 333  GLY A 334                    
SITE     2 BC1  9 LYS A 337  GOL A1362  HOH A2141  HOH A2158                    
SITE     3 BC1  9 HOH A2159                                                     
SITE     1 BC2  7 PHE A  93  SER A  94  LYS A 111  GLU A 130                    
SITE     2 BC2  7 ATP A1373  HOH A2160  HOH A2164                               
SITE     1 BC3  8 PHE A  82  LYS A  83  PHE A  84  GLU A 194                    
SITE     2 BC3  8 LYS A 337  GOL A1360  HOH A2004  HOH A2009                    
SITE     1 BC4  6 PRO A  79  PHE A  84  LYS A 154  TYR A 156                    
SITE     2 BC4  6 GLU A 331  GLY A 332                                          
SITE     1 BC5  2 PRO A 307  LYS A 308                                          
SITE     1 BC6  9 ALA A 103  THR A 104  HIS A 139  SER A 191                    
SITE     2 BC6  9 TRP A 347  GLU A 348  ASN A 349  LEU A 350                    
SITE     3 BC6  9 HIS A 351                                                     
CRYST1  121.827  121.827   47.750  90.00  90.00 120.00 P 32 2 1      6          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.008208  0.004739  0.000000        0.00000                         
SCALE2      0.000000  0.009478  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.020942        0.00000