HEADER OXIDOREDUCTASE 04-FEB-05 2BJO TITLE CRYSTAL STRUCTURE OF THE ORGANIC HYDROPEROXIDE RESISTANCE PROTEIN OHRB TITLE 2 OF BACILLUS SUBTILIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ORGANIC HYDROPEROXIDE RESISTANCE PROTEIN OHRB; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GENERAL STRESS PROTEIN 17O, GSP17O; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(RIL); SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS ORGANIC HYDROPEROXIDE RESISTANCE, HEAT SHOCK PROTEIN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR D.R.COOPER,Y.SURENDRANATH,J.BIELNICKI,Y.DEVEDJIEV,A.JOACHIMIAK, AUTHOR 2 Z.S.DEREWENDA REVDAT 6 13-DEC-23 2BJO 1 REMARK REVDAT 5 13-JUL-11 2BJO 1 VERSN REVDAT 4 24-FEB-09 2BJO 1 VERSN REVDAT 3 25-DEC-07 2BJO 1 JRNL REMARK ATOM MASTER REVDAT 2 18-SEP-07 2BJO 1 REMARK REVDAT 1 09-MAR-06 2BJO 0 JRNL AUTH D.R.COOPER,Y.SURENDRANATH,Y.DEVEDJIEV,J.BIELNICKI, JRNL AUTH 2 Z.S.DEREWENDA JRNL TITL STRUCTURE OF THE BACILLUS SUBTILIS OHRB JRNL TITL 2 HYDROPEROXIDE-RESISTANCE PROTEIN IN A FULLY OXIDIZED STATE. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 63 1269 2007 JRNL REFN ISSN 0907-4449 JRNL PMID 18084074 JRNL DOI 10.1107/S0907444907050226 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 88.4 REMARK 3 NUMBER OF REFLECTIONS : 11511 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.640 REMARK 3 FREE R VALUE TEST SET COUNT : 942 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 408 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 43.07 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE SET COUNT : 33 REMARK 3 BIN FREE R VALUE : 0.3100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2006 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 218 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 29.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.50200 REMARK 3 B22 (A**2) : -0.19900 REMARK 3 B33 (A**2) : 0.36000 REMARK 3 B12 (A**2) : 0.37900 REMARK 3 B13 (A**2) : -0.30900 REMARK 3 B23 (A**2) : 0.59500 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.327 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.196 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.116 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2034 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1828 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2746 ; 2.430 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4266 ; 1.432 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 268 ; 5.486 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 94 ;36.946 ;25.957 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 342 ;14.726 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;14.966 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 312 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2330 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 382 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 383 ; 0.183 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1750 ; 0.160 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 957 ; 0.154 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1179 ; 0.083 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 171 ; 0.178 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 10 ; 0.083 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 53 ; 0.172 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.236 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1713 ; 2.397 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2102 ; 2.808 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 792 ; 2.254 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 644 ; 3.202 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 44 REMARK 3 ORIGIN FOR THE GROUP (A): -5.6320 -3.0670 9.4340 REMARK 3 T TENSOR REMARK 3 T11: -0.0147 T22: -0.0603 REMARK 3 T33: -0.0551 T12: -0.0052 REMARK 3 T13: -0.0106 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 0.9389 L22: 1.4352 REMARK 3 L33: 0.8413 L12: -0.3941 REMARK 3 L13: -0.1741 L23: 0.2493 REMARK 3 S TENSOR REMARK 3 S11: -0.0965 S12: -0.0225 S13: -0.1074 REMARK 3 S21: 0.3886 S22: 0.1052 S23: -0.0318 REMARK 3 S31: 0.0950 S32: -0.0103 S33: -0.0087 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 45 A 136 REMARK 3 ORIGIN FOR THE GROUP (A): -1.9860 1.6960 -12.3460 REMARK 3 T TENSOR REMARK 3 T11: -0.0384 T22: -0.0773 REMARK 3 T33: -0.0408 T12: -0.0138 REMARK 3 T13: 0.0203 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 0.9270 L22: 1.7693 REMARK 3 L33: 2.7787 L12: -0.5834 REMARK 3 L13: 0.3600 L23: -0.9838 REMARK 3 S TENSOR REMARK 3 S11: 0.0687 S12: 0.1439 S13: 0.0082 REMARK 3 S21: -0.2347 S22: -0.1061 S23: -0.1295 REMARK 3 S31: 0.0925 S32: -0.0004 S33: 0.0375 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 44 REMARK 3 ORIGIN FOR THE GROUP (A): -10.2270 3.9880 -1.4080 REMARK 3 T TENSOR REMARK 3 T11: -0.0583 T22: -0.0480 REMARK 3 T33: -0.0450 T12: -0.0135 REMARK 3 T13: -0.0055 T23: 0.0112 REMARK 3 L TENSOR REMARK 3 L11: 1.3701 L22: 2.8986 REMARK 3 L33: 1.3521 L12: -0.8797 REMARK 3 L13: 0.3074 L23: -0.3044 REMARK 3 S TENSOR REMARK 3 S11: -0.0088 S12: -0.0495 S13: -0.1392 REMARK 3 S21: -0.0884 S22: 0.0714 S23: 0.1894 REMARK 3 S31: -0.0918 S32: -0.2263 S33: -0.0626 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 45 B 136 REMARK 3 ORIGIN FOR THE GROUP (A): 8.7180 -1.6930 9.1120 REMARK 3 T TENSOR REMARK 3 T11: -0.0434 T22: -0.0443 REMARK 3 T33: 0.0074 T12: -0.0195 REMARK 3 T13: -0.0329 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 1.2899 L22: 3.5587 REMARK 3 L33: 1.5984 L12: -1.5168 REMARK 3 L13: 0.5460 L23: -0.7869 REMARK 3 S TENSOR REMARK 3 S11: -0.1069 S12: -0.1195 S13: 0.1076 REMARK 3 S21: 0.3409 S22: -0.0208 S23: -0.3673 REMARK 3 S31: -0.0993 S32: 0.1826 S33: 0.1277 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2BJO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-FEB-05. REMARK 100 THE DEPOSITION ID IS D_1290022833. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-DEC-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : ENRAF-NONIUS FR591 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC CONFOCAL MAXFLUX REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU IMAGE PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12453 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.6 REMARK 200 DATA REDUNDANCY : 2.300 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 46.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.25000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1N2F REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0 M SODIUM CITRATE AND 0.1 M REMARK 280 CACODYLATE (PH 6.5). REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 THIS PROTEIN PARTICIPATE IN ORGANIC HYDROPEROXIDE RESISTANCE REMARK 400 ENGINEERED MUTATION LYS 34 TO ALA, LYS 35 TO ALA, GLU 36 REMARK 400 TO ALA IN CHAINS A AND B REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2001 O HOH A 2003 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2032 O HOH B 2109 1455 2.18 REMARK 500 O HOH B 2032 O HOH B 2107 1455 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 11 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 101 -108.57 45.39 REMARK 500 ALA B 34 48.13 -146.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2006 DISTANCE = 7.24 ANGSTROMS REMARK 999 REMARK 999 SEQUENCE REMARK 999 TRIPLE MUTATION TO AID CRYSTALLIZATION REMARK 999 METHIONINE IS NOT IN THE ALIGNMENT DBREF 2BJO A 1 1 PDB 2BJO 2BJO 1 1 DBREF 2BJO A 2 136 UNP P80242 OHRB_BACSU 1 135 DBREF 2BJO B 1 1 PDB 2BJO 2BJO 1 1 DBREF 2BJO B 2 136 UNP P80242 OHRB_BACSU 1 135 SEQADV 2BJO ALA A 35 UNP P80242 LYS 34 ENGINEERED MUTATION SEQADV 2BJO ALA A 36 UNP P80242 LYS 35 ENGINEERED MUTATION SEQADV 2BJO ALA A 37 UNP P80242 GLU 36 ENGINEERED MUTATION SEQADV 2BJO ALA B 35 UNP P80242 LYS 34 ENGINEERED MUTATION SEQADV 2BJO ALA B 36 UNP P80242 LYS 35 ENGINEERED MUTATION SEQADV 2BJO ALA B 37 UNP P80242 GLU 36 ENGINEERED MUTATION SEQRES 1 A 136 MET ALA LEU PHE THR ALA LYS VAL THR ALA ARG GLY GLY SEQRES 2 A 136 ARG ALA GLY HIS ILE THR SER ASP ASP GLY VAL LEU ASP SEQRES 3 A 136 PHE ASP ILE VAL MET PRO ASN ALA ALA ALA ALA GLY GLN SEQRES 4 A 136 THR GLY THR ASN PRO GLU GLN LEU PHE ALA ALA GLY TYR SEQRES 5 A 136 ALA ALA CYS PHE GLY GLY ALA LEU GLU HIS VAL ALA LYS SEQRES 6 A 136 GLU GLN ASN ILE GLU ILE ASP SER GLU ILE GLU GLY GLN SEQRES 7 A 136 VAL SER LEU MET LYS ASP GLU SER ASP GLY GLY PHE LYS SEQRES 8 A 136 ILE GLY VAL THR LEU VAL VAL ASN THR LYS ASP LEU ASP SEQRES 9 A 136 ARG GLU LYS ALA GLN GLU LEU VAL ASN ALA ALA HIS GLU SEQRES 10 A 136 PHE CYS PRO TYR SER LYS ALA THR ARG GLY ASN VAL ASP SEQRES 11 A 136 VAL LYS LEU GLU LEU LYS SEQRES 1 B 136 MET ALA LEU PHE THR ALA LYS VAL THR ALA ARG GLY GLY SEQRES 2 B 136 ARG ALA GLY HIS ILE THR SER ASP ASP GLY VAL LEU ASP SEQRES 3 B 136 PHE ASP ILE VAL MET PRO ASN ALA ALA ALA ALA GLY GLN SEQRES 4 B 136 THR GLY THR ASN PRO GLU GLN LEU PHE ALA ALA GLY TYR SEQRES 5 B 136 ALA ALA CYS PHE GLY GLY ALA LEU GLU HIS VAL ALA LYS SEQRES 6 B 136 GLU GLN ASN ILE GLU ILE ASP SER GLU ILE GLU GLY GLN SEQRES 7 B 136 VAL SER LEU MET LYS ASP GLU SER ASP GLY GLY PHE LYS SEQRES 8 B 136 ILE GLY VAL THR LEU VAL VAL ASN THR LYS ASP LEU ASP SEQRES 9 B 136 ARG GLU LYS ALA GLN GLU LEU VAL ASN ALA ALA HIS GLU SEQRES 10 B 136 PHE CYS PRO TYR SER LYS ALA THR ARG GLY ASN VAL ASP SEQRES 11 B 136 VAL LYS LEU GLU LEU LYS FORMUL 3 HOH *218(H2 O) HELIX 1 1 GLY A 13 ALA A 15 5 3 HELIX 2 2 ASN A 43 GLU A 66 1 24 HELIX 3 3 ASP A 104 CYS A 119 1 16 HELIX 4 4 CYS A 119 ARG A 126 1 8 HELIX 5 5 MET B 31 ALA B 35 5 5 HELIX 6 6 ASN B 43 GLN B 67 1 25 HELIX 7 7 ASP B 104 CYS B 119 1 16 HELIX 8 8 CYS B 119 ARG B 126 1 8 SHEET 1 AA 6 ASP A 26 ASP A 28 0 SHEET 2 AA 6 HIS A 17 SER A 20 -1 O ILE A 18 N PHE A 27 SHEET 3 AA 6 PHE A 4 ARG A 11 -1 O THR A 9 N THR A 19 SHEET 4 AA 6 SER B 73 ASP B 84 -1 O ILE B 75 N ALA A 10 SHEET 5 AA 6 GLY B 89 THR B 100 -1 O GLY B 89 N ASP B 84 SHEET 6 AA 6 VAL B 131 LYS B 136 1 O LYS B 132 N LEU B 96 SHEET 1 AB 6 LYS A 132 LYS A 136 0 SHEET 2 AB 6 GLY A 89 ASN A 99 1 O VAL A 94 N LYS A 132 SHEET 3 AB 6 GLU A 74 ASP A 84 -1 O GLU A 74 N ASN A 99 SHEET 4 AB 6 PHE B 4 ARG B 11 -1 O PHE B 4 N LEU A 81 SHEET 5 AB 6 HIS B 17 SER B 20 -1 O HIS B 17 N ARG B 11 SHEET 6 AB 6 ASP B 26 ASP B 28 -1 O PHE B 27 N ILE B 18 SSBOND 1 CYS A 55 CYS A 119 1555 1555 2.11 SSBOND 2 CYS B 55 CYS B 119 1555 1555 2.08 CRYST1 35.340 41.434 44.600 84.45 91.51 73.89 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028297 -0.008173 0.001641 0.00000 SCALE2 0.000000 0.025121 -0.002737 0.00000 SCALE3 0.000000 0.000000 0.022562 0.00000