HEADER ALLERGEN 09-FEB-05 2BK0 TITLE CRYSTAL STRUCTURE OF THE MAJOR CELERY ALLERGEN API G 1 CAVEAT 2BK0 ILE B 64 C-ALPHA IS PLANAR COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR ALLERGEN API G 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CELERY ALLERGEN API G 1, API G 1.0101, API G I; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: APIUM GRAVEOLENS; SOURCE 3 ORGANISM_COMMON: CELERY; SOURCE 4 ORGANISM_TAXID: 4045; SOURCE 5 TISSUE: BULB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMW175 KEYWDS MAJOR CELERY ALLERGEN API G 1, BET V 1-RELATED PROTEIN, CROSS KEYWDS 2 REACTIVE EPITOPES, ALLERGEN, PATHOGENESIS-RELATED PROTEIN, PLANT KEYWDS 3 DEFENSE EXPDTA X-RAY DIFFRACTION AUTHOR T.SCHIRMER,K.HOFFMANN-SOMMERGRUBER,H.BREITENEDER,Z.MARKOVIC-HOUSLEY REVDAT 6 13-DEC-23 2BK0 1 REMARK REVDAT 5 06-MAR-19 2BK0 1 TITLE REMARK REVDAT 4 13-JUL-11 2BK0 1 VERSN REVDAT 3 24-FEB-09 2BK0 1 VERSN REVDAT 2 22-MAY-06 2BK0 1 JRNL REVDAT 1 13-JUN-05 2BK0 0 JRNL AUTH T.SCHIRMER,K.HOFFMANN-SOMERGRUBE,M.SUSANI,H.BREITENEDER, JRNL AUTH 2 Z.MARKOVIC-HOUSLEY JRNL TITL CRYSTAL STRUCTURE OF THE MAJOR CELERY ALLERGEN API G 1: JRNL TITL 2 MOLECULAR ANALYSIS OF CROSS-REACTIVITY. JRNL REF J.MOL.BIOL. V. 351 1101 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 16051263 JRNL DOI 10.1016/J.JMB.2005.06.054 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 3 NUMBER OF REFLECTIONS : 6567 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 315 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 513 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3260 REMARK 3 BIN FREE R VALUE SET COUNT : 20 REMARK 3 BIN FREE R VALUE : 0.2720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2280 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.97000 REMARK 3 B22 (A**2) : 4.53000 REMARK 3 B33 (A**2) : -2.52000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.84000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.474 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.404 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.899 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2230 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2051 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3044 ; 1.053 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4760 ; 0.941 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 301 ; 5.761 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 78 ;41.961 ;26.410 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 340 ;19.527 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ;24.267 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 378 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2509 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 389 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 383 ; 0.189 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1848 ; 0.179 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1084 ; 0.169 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1317 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 39 ; 0.148 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 7 ; 0.109 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 27 ; 0.162 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 1 ; 0.378 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1948 ; 0.243 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2419 ; 0.274 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 813 ; 0.346 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 625 ; 0.575 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 7 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 2 A 8 1 REMARK 3 1 B 2 B 8 1 REMARK 3 2 A 18 A 22 1 REMARK 3 2 B 18 B 22 1 REMARK 3 3 A 23 A 30 1 REMARK 3 3 B 23 B 30 1 REMARK 3 4 A 44 A 69 1 REMARK 3 4 B 44 B 69 1 REMARK 3 5 A 71 A 93 1 REMARK 3 5 B 71 B 93 1 REMARK 3 6 A 95 A 121 1 REMARK 3 6 B 95 B 121 1 REMARK 3 7 A 132 A 146 1 REMARK 3 7 B 132 B 146 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 1521 ; 0.06 ; 0.05 REMARK 3 TIGHT THERMAL 1 A (A**2): 1521 ; 0.08 ; 0.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 154 REMARK 3 ORIGIN FOR THE GROUP (A): 38.2740 -0.6980 22.6170 REMARK 3 T TENSOR REMARK 3 T11: 0.2484 T22: 0.3951 REMARK 3 T33: 0.4549 T12: -0.0515 REMARK 3 T13: -0.0666 T23: -0.1094 REMARK 3 L TENSOR REMARK 3 L11: 3.1740 L22: 3.1416 REMARK 3 L33: 2.3202 L12: 1.2498 REMARK 3 L13: -0.1359 L23: 1.0716 REMARK 3 S TENSOR REMARK 3 S11: 0.0843 S12: 0.0652 S13: -0.4191 REMARK 3 S21: 0.0750 S22: -0.3305 S23: 0.6207 REMARK 3 S31: 0.3576 S32: -0.2724 S33: 0.2462 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 154 REMARK 3 ORIGIN FOR THE GROUP (A): 65.2870 29.7700 40.2000 REMARK 3 T TENSOR REMARK 3 T11: 0.3512 T22: 0.4822 REMARK 3 T33: 0.3703 T12: -0.2171 REMARK 3 T13: 0.0333 T23: -0.1559 REMARK 3 L TENSOR REMARK 3 L11: 7.7760 L22: 2.7387 REMARK 3 L33: 4.8543 L12: 1.5089 REMARK 3 L13: -2.0667 L23: 0.0744 REMARK 3 S TENSOR REMARK 3 S11: 0.4443 S12: -0.6448 S13: 0.9225 REMARK 3 S21: 0.2374 S22: 0.0729 S23: -0.1814 REMARK 3 S31: -0.6709 S32: 0.6485 S33: -0.5173 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2BK0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-FEB-05. REMARK 100 THE DEPOSITION ID IS D_1290022892. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 277.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : ROTATING GENERATOR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMICS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7549 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 36.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.1 REMARK 200 DATA REDUNDANCY : 1.650 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.59 REMARK 200 R MERGE FOR SHELL (I) : 0.39000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.360 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1BV1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOUR DIFFUSION. RESERVOIR: 10% REMARK 280 DIOXANE, 0.1M MES (PH 6.5), 1.6 M AMMONIUM SULFATE. PROTEIN: REMARK 280 35MG/ML IN 28 MM SODIUM PHOSPHATE (PH 7.0)., PH 6.50, VAPOR REMARK 280 DIFFUSION REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 52.93900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.97350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 52.93900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.97350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ALLERGEN: PROVOCATES AN ALLERGIC REACTION IN HUMAN REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 ASP B 125 REMARK 475 ALA B 126 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 4 CG CD OE1 NE2 REMARK 480 LYS A 18 CD CE NZ REMARK 480 SER A 41 OG REMARK 480 GLU A 43 CG CD OE1 OE2 REMARK 480 LYS A 45 CG CD CE NZ REMARK 480 ILE A 90 CG1 CG2 CD1 REMARK 480 PHE A 94 CD1 CD2 CE1 CE2 CZ REMARK 480 GLU A 130 CD OE1 OE2 REMARK 480 LYS A 145 CE NZ REMARK 480 LEU A 147 CD1 CD2 REMARK 480 GLN B 4 CG CD OE1 NE2 REMARK 480 LYS B 18 CD CE NZ REMARK 480 GLU B 43 OE2 REMARK 480 ILE B 44 CG1 CG2 CD1 REMARK 480 LYS B 45 CD CE NZ REMARK 480 ILE B 64 CB CG1 CG2 CD1 REMARK 480 THR B 65 OG1 CG2 REMARK 480 PHE B 94 CD1 CD2 CE1 CE2 CZ REMARK 480 LYS B 115 CD CE NZ REMARK 480 LYS B 123 CD CE NZ REMARK 480 ILE B 133 CG1 CG2 CD1 REMARK 480 LYS B 134 CD CE NZ REMARK 480 LYS B 145 CE NZ REMARK 480 LEU B 147 CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY B 124 C ASP B 125 0.72 REMARK 500 O GLY B 124 CA ASP B 125 0.85 REMARK 500 C GLY B 124 CA ASP B 125 1.12 REMARK 500 CA GLY B 124 N ASP B 125 1.35 REMARK 500 CG2 ILE B 64 OD2 ASP B 89 1.62 REMARK 500 O GLY B 124 N ALA B 126 1.64 REMARK 500 O GLY B 124 N ASP B 125 1.69 REMARK 500 O GLY B 124 O ASP B 125 1.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN A 4 CB GLN A 4 CG -0.327 REMARK 500 SER A 41 CB SER A 41 OG -0.524 REMARK 500 LYS A 45 CB LYS A 45 CG -0.399 REMARK 500 PHE A 94 CG PHE A 94 CD2 -0.100 REMARK 500 GLU A 130 CG GLU A 130 CD -0.175 REMARK 500 LEU A 147 CG LEU A 147 CD1 -0.239 REMARK 500 GLN B 4 CB GLN B 4 CG -0.334 REMARK 500 GLU B 43 CD GLU B 43 OE2 -0.395 REMARK 500 ILE B 44 CB ILE B 44 CG1 0.438 REMARK 500 ILE B 44 CB ILE B 44 CG2 0.582 REMARK 500 LYS B 45 CG LYS B 45 CD 0.267 REMARK 500 ILE B 64 CA ILE B 64 CB -0.255 REMARK 500 PHE B 94 CG PHE B 94 CD2 0.407 REMARK 500 PHE B 94 CG PHE B 94 CD1 -0.331 REMARK 500 GLY B 124 C ASP B 125 N -0.584 REMARK 500 ILE B 133 CB ILE B 133 CG1 0.197 REMARK 500 LEU B 147 CG LEU B 147 CD1 0.446 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 45 CA - CB - CG ANGL. DEV. = 27.1 DEGREES REMARK 500 PHE A 94 CB - CG - CD2 ANGL. DEV. = -7.7 DEGREES REMARK 500 PHE A 94 CD1 - CG - CD2 ANGL. DEV. = 16.9 DEGREES REMARK 500 PHE A 94 CB - CG - CD1 ANGL. DEV. = -12.8 DEGREES REMARK 500 PHE A 94 CG - CD1 - CE1 ANGL. DEV. = -9.3 DEGREES REMARK 500 PHE A 94 CG - CD2 - CE2 ANGL. DEV. = -9.3 DEGREES REMARK 500 LEU A 147 CB - CG - CD1 ANGL. DEV. = 22.5 DEGREES REMARK 500 GLN B 4 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 GLU B 43 OE1 - CD - OE2 ANGL. DEV. = -35.4 DEGREES REMARK 500 GLU B 43 CG - CD - OE2 ANGL. DEV. = 31.2 DEGREES REMARK 500 ILE B 44 CG1 - CB - CG2 ANGL. DEV. = -35.5 DEGREES REMARK 500 ILE B 44 CA - CB - CG1 ANGL. DEV. = -18.4 DEGREES REMARK 500 ILE B 44 CA - CB - CG2 ANGL. DEV. = -22.1 DEGREES REMARK 500 LYS B 45 CB - CG - CD ANGL. DEV. = -20.6 DEGREES REMARK 500 ILE B 64 CB - CA - C ANGL. DEV. = 18.5 DEGREES REMARK 500 PHE B 94 CB - CG - CD2 ANGL. DEV. = -22.2 DEGREES REMARK 500 PHE B 94 CB - CG - CD1 ANGL. DEV. = 28.9 DEGREES REMARK 500 PHE B 94 CG - CD1 - CE1 ANGL. DEV. = 13.8 DEGREES REMARK 500 GLY B 124 CA - C - N ANGL. DEV. = -55.0 DEGREES REMARK 500 ASP B 125 C - N - CA ANGL. DEV. = -66.2 DEGREES REMARK 500 ASP B 125 CB - CA - C ANGL. DEV. = 12.5 DEGREES REMARK 500 ASP B 125 CA - C - N ANGL. DEV. = -22.8 DEGREES REMARK 500 ASP B 125 O - C - N ANGL. DEV. = 12.6 DEGREES REMARK 500 ALA B 126 CA - C - N ANGL. DEV. = -23.6 DEGREES REMARK 500 ALA B 126 O - C - N ANGL. DEV. = 18.8 DEGREES REMARK 500 VAL B 127 C - N - CA ANGL. DEV. = -38.2 DEGREES REMARK 500 LEU B 147 CB - CG - CD1 ANGL. DEV. = -14.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 24 -59.16 -125.97 REMARK 500 ALA A 35 78.83 -154.39 REMARK 500 LEU A 92 -134.43 59.33 REMARK 500 VAL B 24 -59.18 -132.14 REMARK 500 ALA B 35 70.06 169.19 REMARK 500 PRO B 59 150.43 -49.15 REMARK 500 LEU B 92 -135.93 57.03 REMARK 500 ASP B 125 100.77 57.31 REMARK 500 ALA B 126 -150.58 -106.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY B 124 ASP B 125 -149.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY B 124 38.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 N-TERMINAL MET MISSING DBREF 2BK0 A 1 154 UNP P49372 ALL1_APIGR 1 154 DBREF 2BK0 B 1 154 UNP P49372 ALL1_APIGR 1 154 SEQRES 1 A 154 MET GLY VAL GLN THR HIS VAL LEU GLU LEU THR SER SER SEQRES 2 A 154 VAL SER ALA GLU LYS ILE PHE GLN GLY PHE VAL ILE ASP SEQRES 3 A 154 VAL ASP THR VAL LEU PRO LYS ALA ALA PRO GLY ALA TYR SEQRES 4 A 154 LYS SER VAL GLU ILE LYS GLY ASP GLY GLY PRO GLY THR SEQRES 5 A 154 LEU LYS ILE ILE THR LEU PRO ASP GLY GLY PRO ILE THR SEQRES 6 A 154 THR MET THR LEU ARG ILE ASP GLY VAL ASN LYS GLU ALA SEQRES 7 A 154 LEU THR PHE ASP TYR SER VAL ILE ASP GLY ASP ILE LEU SEQRES 8 A 154 LEU GLY PHE ILE GLU SER ILE GLU ASN HIS VAL VAL LEU SEQRES 9 A 154 VAL PRO THR ALA ASP GLY GLY SER ILE CYS LYS THR THR SEQRES 10 A 154 ALA ILE PHE HIS THR LYS GLY ASP ALA VAL VAL PRO GLU SEQRES 11 A 154 GLU ASN ILE LYS TYR ALA ASN GLU GLN ASN THR ALA LEU SEQRES 12 A 154 PHE LYS ALA LEU GLU ALA TYR LEU ILE ALA ASN SEQRES 1 B 154 MET GLY VAL GLN THR HIS VAL LEU GLU LEU THR SER SER SEQRES 2 B 154 VAL SER ALA GLU LYS ILE PHE GLN GLY PHE VAL ILE ASP SEQRES 3 B 154 VAL ASP THR VAL LEU PRO LYS ALA ALA PRO GLY ALA TYR SEQRES 4 B 154 LYS SER VAL GLU ILE LYS GLY ASP GLY GLY PRO GLY THR SEQRES 5 B 154 LEU LYS ILE ILE THR LEU PRO ASP GLY GLY PRO ILE THR SEQRES 6 B 154 THR MET THR LEU ARG ILE ASP GLY VAL ASN LYS GLU ALA SEQRES 7 B 154 LEU THR PHE ASP TYR SER VAL ILE ASP GLY ASP ILE LEU SEQRES 8 B 154 LEU GLY PHE ILE GLU SER ILE GLU ASN HIS VAL VAL LEU SEQRES 9 B 154 VAL PRO THR ALA ASP GLY GLY SER ILE CYS LYS THR THR SEQRES 10 B 154 ALA ILE PHE HIS THR LYS GLY ASP ALA VAL VAL PRO GLU SEQRES 11 B 154 GLU ASN ILE LYS TYR ALA ASN GLU GLN ASN THR ALA LEU SEQRES 12 B 154 PHE LYS ALA LEU GLU ALA TYR LEU ILE ALA ASN HELIX 1 1 SER A 15 VAL A 24 1 10 HELIX 2 2 ASP A 26 ALA A 35 1 10 HELIX 3 3 PRO A 36 TYR A 39 5 4 HELIX 4 4 GLY A 88 LEU A 92 5 5 HELIX 5 5 PRO A 129 ASN A 154 1 26 HELIX 6 6 SER B 15 VAL B 24 1 10 HELIX 7 7 ASP B 26 LEU B 31 1 6 HELIX 8 8 ALA B 35 TYR B 39 5 5 HELIX 9 9 GLY B 88 LEU B 92 5 5 HELIX 10 10 PRO B 129 ASN B 154 1 26 SHEET 1 AA 7 VAL A 3 SER A 12 0 SHEET 2 AA 7 SER A 112 THR A 122 -1 O SER A 112 N SER A 12 SHEET 3 AA 7 ILE A 95 PRO A 106 -1 N GLU A 96 O HIS A 121 SHEET 4 AA 7 THR A 80 ASP A 87 -1 O PHE A 81 N VAL A 102 SHEET 5 AA 7 THR A 66 ASN A 75 -1 O THR A 68 N ILE A 86 SHEET 6 AA 7 LEU A 53 THR A 57 -1 O LYS A 54 N LEU A 69 SHEET 7 AA 7 SER A 41 LYS A 45 -1 O SER A 41 N THR A 57 SHEET 1 BA 7 VAL B 3 SER B 12 0 SHEET 2 BA 7 SER B 112 THR B 122 -1 O SER B 112 N SER B 12 SHEET 3 BA 7 ILE B 95 PRO B 106 -1 N GLU B 96 O HIS B 121 SHEET 4 BA 7 THR B 80 ASP B 87 -1 O PHE B 81 N VAL B 102 SHEET 5 BA 7 THR B 66 ASN B 75 -1 O THR B 68 N ILE B 86 SHEET 6 BA 7 LEU B 53 THR B 57 -1 O LYS B 54 N LEU B 69 SHEET 7 BA 7 SER B 41 LYS B 45 -1 O SER B 41 N THR B 57 CRYST1 105.878 67.947 48.001 90.00 91.18 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009445 0.000000 0.000195 0.00000 SCALE2 0.000000 0.014717 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020837 0.00000 MTRIX1 1 0.242800 -0.792620 -0.559290 68.44200 1 MTRIX2 1 -0.845520 -0.455550 0.278540 55.42200 1 MTRIX3 1 -0.475550 0.405260 -0.780780 76.57000 1