HEADER OXIDOREDUCTASE 01-MAR-05 2BL4 TITLE LACTALDEHYDE:1,2-PROPANEDIOL OXIDOREDUCTASE OF ESCHERICHIA COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: LACTALDEHYDE REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROPANEDIOL OXIDOREDUCTASE, LACTALDEHYDE-1,2 -PROPANEDIOL COMPND 5 OXIDOREDUCTASE; COMPND 6 EC: 1.1.1.77; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: ECL1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: M15(PREP4); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQE32 KEYWDS OXIDOREDUCTASE, FUCO, GROUP III DEHYDROGENASE, METALO-ENZYMES, KEYWDS 2 DINUCLEOTIDE COFACTOR SPECIFICITY, FUCOSE METABOLISM, IRON, NAD EXPDTA X-RAY DIFFRACTION AUTHOR C.MONTELLA,L.BELLSOLELL,R.PEREZ-LUQUE,J.BADIA,L.BALDOMA,M.COLL, AUTHOR 2 J.AGUILAR REVDAT 3 13-DEC-23 2BL4 1 LINK REVDAT 2 24-FEB-09 2BL4 1 VERSN REVDAT 1 06-JUL-05 2BL4 0 JRNL AUTH C.MONTELLA,L.BELLSOLELL,R.PEREZ-LUQUE,J.BADIA,L.BALDOMA, JRNL AUTH 2 M.COLL,J.AGUILAR JRNL TITL CRYSTAL STRUCTURE OF AN IRON-DEPENDENT GROUP III JRNL TITL 2 DEHYDROGENASE THAT INTERCONVERTS L-LACTALDEHYDE AND JRNL TITL 3 L-1,2-PROPANEDIOL IN ESCHERICHIA COLI. JRNL REF J.BACTERIOL. V. 187 4957 2005 JRNL REFN ISSN 0021-9193 JRNL PMID 15995211 JRNL DOI 10.1128/JB.187.14.4957-4966.2005 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 88.3 REMARK 3 NUMBER OF REFLECTIONS : 25260 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.254 REMARK 3 R VALUE (WORKING SET) : 0.251 REMARK 3 FREE R VALUE : 0.303 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1366 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.92 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1719 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3860 REMARK 3 BIN FREE R VALUE SET COUNT : 107 REMARK 3 BIN FREE R VALUE : 0.5280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5690 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 91 REMARK 3 SOLVENT ATOMS : 47 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.72000 REMARK 3 B22 (A**2) : 2.72000 REMARK 3 B33 (A**2) : -4.08000 REMARK 3 B12 (A**2) : 1.36000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.313 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.440 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.336 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 40.478 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.900 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.850 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5894 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8038 ; 1.788 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 762 ; 6.344 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 236 ;38.992 ;24.407 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 920 ;20.794 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;24.137 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 928 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4446 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3550 ; 0.264 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4095 ; 0.319 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 287 ; 0.182 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 27 ; 0.207 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 2 ; 0.029 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3868 ; 0.506 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6056 ; 0.887 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2282 ; 1.468 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1982 ; 2.433 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 7 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 383 REMARK 3 RESIDUE RANGE : B 1002 B 1383 REMARK 3 RESIDUE RANGE : A 400 A 400 REMARK 3 RESIDUE RANGE : B 1400 B 1400 REMARK 3 RESIDUE RANGE : A 401 A 401 REMARK 3 RESIDUE RANGE : B 1401 B 1401 REMARK 3 RESIDUE RANGE : S 500 S 546 REMARK 3 ORIGIN FOR THE GROUP (A): -0.7567 76.2006 103.3137 REMARK 3 T TENSOR REMARK 3 T11: -0.0844 T22: -0.1216 REMARK 3 T33: -0.0738 T12: -0.0269 REMARK 3 T13: -0.0366 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.6317 L22: 0.7029 REMARK 3 L33: 1.5182 L12: 0.2362 REMARK 3 L13: -0.2868 L23: -0.3148 REMARK 3 S TENSOR REMARK 3 S11: 0.0773 S12: -0.0444 S13: 0.0540 REMARK 3 S21: 0.0948 S22: -0.0547 S23: -0.0250 REMARK 3 S31: -0.0631 S32: 0.0541 S33: -0.0227 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2BL4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-MAR-05. REMARK 100 THE DEPOSITION ID IS D_1290023149. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-03 REMARK 200 TEMPERATURE (KELVIN) : 110.0 REMARK 200 PH : 6.00 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : XDS, SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24555 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 28.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 81.4 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.1600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 67.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.54000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.620 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1O2D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS CRYSTALLIZED FROM 0.8M REMARK 280 AMMONIUM SULPHATE, 0.1M MES PH6, PH 6.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.81967 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 121.63933 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 121.63933 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 60.81967 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 CATALYTIC ACTIVITY: R[OR(S)]-PROPANE-1,2-DIOL + NAD+ => REMARK 400 R[OR(S)]-LACTALDEHYDE + NADH. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 GLY A -2 REMARK 465 ILE A -1 REMARK 465 LEU A 0 REMARK 465 MET A 1 REMARK 465 HIS B 992 REMARK 465 HIS B 993 REMARK 465 HIS B 994 REMARK 465 HIS B 995 REMARK 465 HIS B 996 REMARK 465 HIS B 997 REMARK 465 GLY B 998 REMARK 465 ILE B 999 REMARK 465 LEU B 1000 REMARK 465 MET B 1001 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 FE FE2 A 1384 C5N NAD A 1385 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS B1040 CD LYS B1040 CE 0.211 REMARK 500 LYS B1040 CE LYS B1040 NZ 0.401 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 170 CB - CA - C ANGL. DEV. = -12.3 DEGREES REMARK 500 ASP A 236 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 LYS B1040 CD - CE - NZ ANGL. DEV. = -14.9 DEGREES REMARK 500 PRO B1072 C - N - CA ANGL. DEV. = 11.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 28 -18.28 -45.62 REMARK 500 ASN A 71 76.44 55.94 REMARK 500 PHE A 116 40.93 -107.66 REMARK 500 LEU A 122 -23.48 153.55 REMARK 500 ALA A 142 59.41 -91.74 REMARK 500 ARG A 160 70.17 4.41 REMARK 500 ASP A 167 113.29 -170.34 REMARK 500 ALA A 228 -30.94 -142.03 REMARK 500 VAL A 257 -3.47 -153.15 REMARK 500 LEU A 259 -122.93 -123.27 REMARK 500 ASN A 274 29.59 42.05 REMARK 500 ALA A 280 -70.03 -46.53 REMARK 500 LEU A 285 -65.66 -16.01 REMARK 500 ARG A 305 -71.05 -62.91 REMARK 500 ASP A 360 134.65 -38.93 REMARK 500 ARG B1016 105.42 -39.65 REMARK 500 TYR B1031 -169.36 -78.07 REMARK 500 GLN B1032 -47.93 -142.32 REMARK 500 CYS B1045 25.18 -79.29 REMARK 500 SER B1087 -4.52 -141.53 REMARK 500 ASN B1113 70.60 -111.37 REMARK 500 ALA B1117 3.32 -52.14 REMARK 500 VAL B1119 3.82 90.68 REMARK 500 SER B1121 83.35 -65.73 REMARK 500 LEU B1122 -11.84 164.68 REMARK 500 THR B1144 -59.30 15.16 REMARK 500 GLU B1158 -70.52 -59.47 REMARK 500 ARG B1160 87.28 0.60 REMARK 500 ASP B1167 111.45 -166.96 REMARK 500 ALA B1179 -24.37 -39.65 REMARK 500 ALA B1210 143.31 -35.08 REMARK 500 VAL B1257 -33.57 -170.71 REMARK 500 LEU B1259 -142.51 -128.23 REMARK 500 ALA B1293 -71.44 -19.02 REMARK 500 THR B1296 27.45 -142.06 REMARK 500 GLU B1312 -73.40 -31.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2007 DISTANCE = 5.94 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A1384 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 196 OD1 REMARK 620 2 HIS A 200 NE2 87.8 REMARK 620 3 HIS A 263 NE2 113.4 90.9 REMARK 620 4 HIS A 277 NE2 77.1 164.9 95.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 B2384 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B1196 OD1 REMARK 620 2 HIS B1200 NE2 82.3 REMARK 620 3 HIS B1263 NE2 98.0 80.0 REMARK 620 4 HIS B1277 NE2 90.3 168.0 91.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 A1384 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1386 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 B2384 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A1385 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B2385 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RRM RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF LACTALDEHYDE REDUCTASE REMARK 900 RELATED ID: 2BI4 RELATED DB: PDB REMARK 900 LACTALDEHYDE:1,2-PROPANEDIOL OXIDOREDUCTASE OF ESCHERICHIA COLI DBREF 2BL4 A -8 0 PDB 2BL4 2BL4 -8 0 DBREF 2BL4 A 1 383 UNP P11549 FUCO_ECOLI 1 383 DBREF 2BL4 B 992 1000 PDB 2BL4 2BL4 992 1000 DBREF 2BL4 B 1001 1383 UNP P11549 FUCO_ECOLI 1 383 SEQRES 1 A 392 HIS HIS HIS HIS HIS HIS GLY ILE LEU MET MET ALA ASN SEQRES 2 A 392 ARG MET ILE LEU ASN GLU THR ALA TRP PHE GLY ARG GLY SEQRES 3 A 392 ALA VAL GLY ALA LEU THR ASP GLU VAL LYS ARG ARG GLY SEQRES 4 A 392 TYR GLN LYS ALA LEU ILE VAL THR ASP LYS THR LEU VAL SEQRES 5 A 392 GLN CYS GLY VAL VAL ALA LYS VAL THR ASP LYS MET ASP SEQRES 6 A 392 ALA ALA GLY LEU ALA TRP ALA ILE TYR ASP GLY VAL VAL SEQRES 7 A 392 PRO ASN PRO THR ILE THR VAL VAL LYS GLU GLY LEU GLY SEQRES 8 A 392 VAL PHE GLN ASN SER GLY ALA ASP TYR LEU ILE ALA ILE SEQRES 9 A 392 GLY GLY GLY SER PRO GLN ASP THR CYS LYS ALA ILE GLY SEQRES 10 A 392 ILE ILE SER ASN ASN PRO GLU PHE ALA ASP VAL ARG SER SEQRES 11 A 392 LEU GLU GLY LEU SER PRO THR ASN LYS PRO SER VAL PRO SEQRES 12 A 392 ILE LEU ALA ILE PRO THR THR ALA GLY THR ALA ALA GLU SEQRES 13 A 392 VAL THR ILE ASN TYR VAL ILE THR ASP GLU GLU LYS ARG SEQRES 14 A 392 ARG LYS PHE VAL CYS VAL ASP PRO HIS ASP ILE PRO GLN SEQRES 15 A 392 VAL ALA PHE ILE ASP ALA ASP MET MET ASP GLY MET PRO SEQRES 16 A 392 PRO ALA LEU LYS ALA ALA THR GLY VAL ASP ALA LEU THR SEQRES 17 A 392 HIS ALA ILE GLU GLY TYR ILE THR ARG GLY ALA TRP ALA SEQRES 18 A 392 LEU THR ASP ALA LEU HIS ILE LYS ALA ILE GLU ILE ILE SEQRES 19 A 392 ALA GLY ALA LEU ARG GLY SER VAL ALA GLY ASP LYS ASP SEQRES 20 A 392 ALA GLY GLU GLU MET ALA LEU GLY GLN TYR VAL ALA GLY SEQRES 21 A 392 MET GLY PHE SER ASN VAL GLY LEU GLY LEU VAL HIS GLY SEQRES 22 A 392 MET ALA HIS PRO LEU GLY ALA PHE TYR ASN THR PRO HIS SEQRES 23 A 392 GLY VAL ALA ASN ALA ILE LEU LEU PRO HIS VAL MET ARG SEQRES 24 A 392 TYR ASN ALA ASP PHE THR GLY GLU LYS TYR ARG ASP ILE SEQRES 25 A 392 ALA ARG VAL MET GLY VAL LYS VAL GLU GLY MET SER LEU SEQRES 26 A 392 GLU GLU ALA ARG ASN ALA ALA VAL GLU ALA VAL PHE ALA SEQRES 27 A 392 LEU ASN ARG ASP VAL GLY ILE PRO PRO HIS LEU ARG ASP SEQRES 28 A 392 VAL GLY VAL ARG LYS GLU ASP ILE PRO ALA LEU ALA GLN SEQRES 29 A 392 ALA ALA LEU ASP ASP VAL CYS THR GLY GLY ASN PRO ARG SEQRES 30 A 392 GLU ALA THR LEU GLU ASP ILE VAL GLU LEU TYR HIS THR SEQRES 31 A 392 ALA TRP SEQRES 1 B 392 HIS HIS HIS HIS HIS HIS GLY ILE LEU MET MET ALA ASN SEQRES 2 B 392 ARG MET ILE LEU ASN GLU THR ALA TRP PHE GLY ARG GLY SEQRES 3 B 392 ALA VAL GLY ALA LEU THR ASP GLU VAL LYS ARG ARG GLY SEQRES 4 B 392 TYR GLN LYS ALA LEU ILE VAL THR ASP LYS THR LEU VAL SEQRES 5 B 392 GLN CYS GLY VAL VAL ALA LYS VAL THR ASP LYS MET ASP SEQRES 6 B 392 ALA ALA GLY LEU ALA TRP ALA ILE TYR ASP GLY VAL VAL SEQRES 7 B 392 PRO ASN PRO THR ILE THR VAL VAL LYS GLU GLY LEU GLY SEQRES 8 B 392 VAL PHE GLN ASN SER GLY ALA ASP TYR LEU ILE ALA ILE SEQRES 9 B 392 GLY GLY GLY SER PRO GLN ASP THR CYS LYS ALA ILE GLY SEQRES 10 B 392 ILE ILE SER ASN ASN PRO GLU PHE ALA ASP VAL ARG SER SEQRES 11 B 392 LEU GLU GLY LEU SER PRO THR ASN LYS PRO SER VAL PRO SEQRES 12 B 392 ILE LEU ALA ILE PRO THR THR ALA GLY THR ALA ALA GLU SEQRES 13 B 392 VAL THR ILE ASN TYR VAL ILE THR ASP GLU GLU LYS ARG SEQRES 14 B 392 ARG LYS PHE VAL CYS VAL ASP PRO HIS ASP ILE PRO GLN SEQRES 15 B 392 VAL ALA PHE ILE ASP ALA ASP MET MET ASP GLY MET PRO SEQRES 16 B 392 PRO ALA LEU LYS ALA ALA THR GLY VAL ASP ALA LEU THR SEQRES 17 B 392 HIS ALA ILE GLU GLY TYR ILE THR ARG GLY ALA TRP ALA SEQRES 18 B 392 LEU THR ASP ALA LEU HIS ILE LYS ALA ILE GLU ILE ILE SEQRES 19 B 392 ALA GLY ALA LEU ARG GLY SER VAL ALA GLY ASP LYS ASP SEQRES 20 B 392 ALA GLY GLU GLU MET ALA LEU GLY GLN TYR VAL ALA GLY SEQRES 21 B 392 MET GLY PHE SER ASN VAL GLY LEU GLY LEU VAL HIS GLY SEQRES 22 B 392 MET ALA HIS PRO LEU GLY ALA PHE TYR ASN THR PRO HIS SEQRES 23 B 392 GLY VAL ALA ASN ALA ILE LEU LEU PRO HIS VAL MET ARG SEQRES 24 B 392 TYR ASN ALA ASP PHE THR GLY GLU LYS TYR ARG ASP ILE SEQRES 25 B 392 ALA ARG VAL MET GLY VAL LYS VAL GLU GLY MET SER LEU SEQRES 26 B 392 GLU GLU ALA ARG ASN ALA ALA VAL GLU ALA VAL PHE ALA SEQRES 27 B 392 LEU ASN ARG ASP VAL GLY ILE PRO PRO HIS LEU ARG ASP SEQRES 28 B 392 VAL GLY VAL ARG LYS GLU ASP ILE PRO ALA LEU ALA GLN SEQRES 29 B 392 ALA ALA LEU ASP ASP VAL CYS THR GLY GLY ASN PRO ARG SEQRES 30 B 392 GLU ALA THR LEU GLU ASP ILE VAL GLU LEU TYR HIS THR SEQRES 31 B 392 ALA TRP HET FE2 A1384 1 HET NAD A1385 44 HET CL A1386 1 HET FE2 B2384 1 HET NAD B2385 44 HETNAM FE2 FE (II) ION HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM CL CHLORIDE ION FORMUL 3 FE2 2(FE 2+) FORMUL 4 NAD 2(C21 H27 N7 O14 P2) FORMUL 5 CL CL 1- FORMUL 8 HOH *47(H2 O) HELIX 1 1 GLY A 17 GLY A 20 5 4 HELIX 2 2 ALA A 21 ARG A 29 1 9 HELIX 3 3 ASP A 39 CYS A 45 1 7 HELIX 4 4 GLY A 46 ALA A 58 1 13 HELIX 5 5 THR A 73 GLY A 88 1 16 HELIX 6 6 GLY A 97 ASN A 113 1 17 HELIX 7 7 PRO A 114 ALA A 117 5 4 HELIX 8 8 PRO A 168 ILE A 171 5 4 HELIX 9 9 ASP A 178 MET A 182 5 5 HELIX 10 10 PRO A 186 THR A 207 1 22 HELIX 11 11 TRP A 211 GLY A 227 1 17 HELIX 12 12 ALA A 228 ALA A 234 1 7 HELIX 13 13 ASP A 236 SER A 255 1 20 HELIX 14 14 GLY A 260 ASN A 274 1 15 HELIX 15 15 PRO A 276 ALA A 293 1 18 HELIX 16 16 ASP A 294 THR A 296 5 3 HELIX 17 17 GLU A 298 MET A 307 1 10 HELIX 18 18 SER A 315 VAL A 334 1 20 HELIX 19 19 HIS A 339 GLY A 344 5 6 HELIX 20 20 ARG A 346 GLU A 348 5 3 HELIX 21 21 ASP A 349 ASP A 360 1 12 HELIX 22 22 VAL A 361 ASN A 366 5 6 HELIX 23 23 THR A 371 TRP A 383 1 13 HELIX 24 24 GLY B 1017 GLY B 1020 5 4 HELIX 25 25 ALA B 1021 ARG B 1029 1 9 HELIX 26 26 ASP B 1039 CYS B 1045 1 7 HELIX 27 27 VAL B 1048 GLY B 1059 1 12 HELIX 28 28 THR B 1073 ASN B 1086 1 14 HELIX 29 29 GLY B 1097 SER B 1111 1 15 HELIX 30 30 ASN B 1113 ALA B 1117 5 5 HELIX 31 31 PRO B 1168 ILE B 1171 5 4 HELIX 32 32 ASP B 1178 ASP B 1183 1 6 HELIX 33 33 PRO B 1186 THR B 1207 1 22 HELIX 34 34 TRP B 1211 GLY B 1235 1 25 HELIX 35 35 ASP B 1236 SER B 1255 1 20 HELIX 36 36 GLY B 1260 ASN B 1274 1 15 HELIX 37 37 PRO B 1276 ASP B 1294 1 19 HELIX 38 38 GLU B 1298 MET B 1307 1 10 HELIX 39 39 SER B 1315 GLY B 1335 1 21 HELIX 40 40 HIS B 1339 GLY B 1344 5 6 HELIX 41 41 ARG B 1346 GLU B 1348 5 3 HELIX 42 42 ASP B 1349 ASP B 1360 1 12 HELIX 43 43 CYS B 1362 ASN B 1366 5 5 HELIX 44 44 THR B 1371 TRP B 1383 1 13 SHEET 1 AA 3 ASN A 4 ILE A 7 0 SHEET 2 AA 3 THR B1011 PHE B1014 -1 O ALA B1012 N MET A 6 SHEET 3 AA 3 VAL B1174 ILE B1177 1 O ALA B1175 N TRP B1013 SHEET 1 AB 7 ALA A 61 TYR A 65 0 SHEET 2 AB 7 LYS A 33 VAL A 37 1 O ALA A 34 N ALA A 63 SHEET 3 AB 7 TYR A 91 ILE A 95 1 O TYR A 91 N LEU A 35 SHEET 4 AB 7 ILE A 135 ILE A 138 1 O LEU A 136 N ALA A 94 SHEET 5 AB 7 VAL A 174 ILE A 177 1 O VAL A 174 N ALA A 137 SHEET 6 AB 7 THR A 11 PHE A 14 1 O THR A 11 N ALA A 175 SHEET 7 AB 7 ASN B1004 ILE B1007 -1 O ASN B1004 N PHE A 14 SHEET 1 AC 3 GLY A 124 LEU A 125 0 SHEET 2 AC 3 ARG A 161 VAL A 166 1 O VAL A 164 N GLY A 124 SHEET 3 AC 3 ASN A 151 ASP A 156 -1 O TYR A 152 N CYS A 165 SHEET 1 BA 4 ALA B1061 TYR B1065 0 SHEET 2 BA 4 LYS B1033 VAL B1037 1 O ALA B1034 N ALA B1063 SHEET 3 BA 4 TYR B1091 ILE B1095 1 O TYR B1091 N LEU B1035 SHEET 4 BA 4 ILE B1135 ILE B1138 1 O LEU B1136 N ALA B1094 SHEET 1 BB 3 GLY B1124 LEU B1125 0 SHEET 2 BB 3 ARG B1161 VAL B1166 1 O VAL B1164 N GLY B1124 SHEET 3 BB 3 ASN B1151 ASP B1156 -1 O TYR B1152 N CYS B1165 LINK OD1 ASP A 196 FE FE2 A1384 1555 1555 1.99 LINK NE2 HIS A 200 FE FE2 A1384 1555 1555 2.14 LINK NE2 HIS A 263 FE FE2 A1384 1555 1555 2.11 LINK NE2 HIS A 277 FE FE2 A1384 1555 1555 2.12 LINK OD1 ASP B1196 FE FE2 B2384 1555 1555 2.03 LINK NE2 HIS B1200 FE FE2 B2384 1555 1555 2.12 LINK NE2 HIS B1263 FE FE2 B2384 1555 1555 2.17 LINK NE2 HIS B1277 FE FE2 B2384 1555 1555 1.88 SITE 1 AC1 5 ASP A 196 HIS A 200 HIS A 263 HIS A 277 SITE 2 AC1 5 NAD A1385 SITE 1 AC2 2 LYS A 33 LEU B1316 SITE 1 AC3 6 ASP B1196 HIS B1200 HIS B1263 HIS B1277 SITE 2 AC3 6 ASN B1281 NAD B2385 SITE 1 AC4 27 ASP A 39 THR A 41 LEU A 42 PRO A 70 SITE 2 AC4 27 PRO A 72 GLY A 97 GLY A 98 SER A 99 SITE 3 AC4 27 PRO A 100 THR A 140 THR A 141 THR A 144 SITE 4 AC4 27 ASN A 151 VAL A 153 LYS A 162 MET A 181 SITE 5 AC4 27 GLY A 184 MET A 185 LEU A 189 THR A 193 SITE 6 AC4 27 ASP A 196 HIS A 200 PHE A 254 HIS A 263 SITE 7 AC4 27 HIS A 277 FE2 A1384 ASP B1342 SITE 1 AC5 27 ASP A 342 ASP B1039 THR B1041 LEU B1042 SITE 2 AC5 27 ASN B1071 GLY B1097 GLY B1098 SER B1099 SITE 3 AC5 27 PRO B1100 THR B1140 THR B1141 THR B1144 SITE 4 AC5 27 ASN B1151 VAL B1153 LYS B1162 MET B1181 SITE 5 AC5 27 GLY B1184 MET B1185 LEU B1189 THR B1193 SITE 6 AC5 27 ASP B1196 HIS B1200 PHE B1254 LEU B1259 SITE 7 AC5 27 HIS B1263 HIS B1277 FE2 B2384 CRYST1 109.422 109.422 182.459 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009139 0.005276 0.000000 0.00000 SCALE2 0.000000 0.010553 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005481 0.00000