data_2BLB # _entry.id 2BLB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2BLB PDBE EBI-23173 WWPDB D_1290023173 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 2BL9 unspecified 'X-RAY CRYSTAL STRUCTURE OF PLASMODIUM VIVAX DIHYDROFOLATE REDUCTASE IN COMPLEX WITH PYRIMETHAMINE AND ITS DERIVATIVE' PDB 2BLA unspecified 'SP21 DOUBLE MUTANT P. VIVAX DIHYDROFOLATE REDUCTASE IN COMPLEX WITH PYRIMETHAMINE' PDB 2BLC unspecified 'SP21 DOUBLE MUTANT P. VIVAX DIHYDROFOLATE REDUCTASE IN COMPLEX WITH DES- CHLOROPYRIMETHAMINE' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2BLB _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2005-03-03 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kongsaeree, P.' 1 'Khongsuk, P.' 2 'Leartsakulpanich, U.' 3 'Chitnumsub, P.' 4 'Tarnchompoo, B.' 5 'Walkinshaw, M.D.' 6 'Yuthavong, Y.' 7 # _citation.id primary _citation.title ;Crystal Structure of Dihydrofolate Reductase from Plasmodium Vivax: Pyrimethamine Displacement Linked with Mutation-Induced Resistance. ; _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 102 _citation.page_first 13046 _citation.page_last ? _citation.year 2005 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16135570 _citation.pdbx_database_id_DOI 10.1073/PNAS.0501747102 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kongsaeree, P.' 1 primary 'Khongsuk, P.' 2 primary 'Leartsakulpanich, U.' 3 primary 'Chitnumsub, P.' 4 primary 'Tarnchompoo, B.' 5 primary 'Walkinshaw, M.D.' 6 primary 'Yuthavong, Y.' 7 # _cell.entry_id 2BLB _cell.length_a 130.480 _cell.length_b 55.570 _cell.length_c 45.270 _cell.angle_alpha 90.00 _cell.angle_beta 106.76 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BLB _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DIHYDROFOLATE REDUCTASE-THYMIDYLATE SYNTHASE' 27110.992 1 1.5.1.3 ? ? ? 2 non-polymer syn 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 745.421 1 ? ? ? ? 3 non-polymer syn 6-ETHYL-5-PHENYLPYRIMIDINE-2,4-DIAMINE 214.266 1 ? ? ? ? 4 non-polymer syn '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' 195.237 1 ? ? ? ? 5 water nat water 18.015 65 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'DIHYDROFOLATE REDUCTASE' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MENLSDVFDIYAICACCKVAPTSAGTKNEPFSPRTFRGLGNKGTLPWKCNSVDMKYFSSVTTYVDESKYEKLKWKRERYL RMEASQGGGDNTSGGDNTHGGDNADKLQNVVVMGRSSWESIPKQYKPLPNRINVVLSKTLTKEDVKEKVFIIDSIDDLLL LLKKLKYYKCFIIGGAQVYRECLSRNLIKQIYFTRINGAYPCDVFFPEFDESEFRVTSVSEVYNSKGTTLDFLVYSKV ; _entity_poly.pdbx_seq_one_letter_code_can ;MENLSDVFDIYAICACCKVAPTSAGTKNEPFSPRTFRGLGNKGTLPWKCNSVDMKYFSSVTTYVDESKYEKLKWKRERYL RMEASQGGGDNTSGGDNTHGGDNADKLQNVVVMGRSSWESIPKQYKPLPNRINVVLSKTLTKEDVKEKVFIIDSIDDLLL LLKKLKYYKCFIIGGAQVYRECLSRNLIKQIYFTRINGAYPCDVFFPEFDESEFRVTSVSEVYNSKGTTLDFLVYSKV ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLU n 1 3 ASN n 1 4 LEU n 1 5 SER n 1 6 ASP n 1 7 VAL n 1 8 PHE n 1 9 ASP n 1 10 ILE n 1 11 TYR n 1 12 ALA n 1 13 ILE n 1 14 CYS n 1 15 ALA n 1 16 CYS n 1 17 CYS n 1 18 LYS n 1 19 VAL n 1 20 ALA n 1 21 PRO n 1 22 THR n 1 23 SER n 1 24 ALA n 1 25 GLY n 1 26 THR n 1 27 LYS n 1 28 ASN n 1 29 GLU n 1 30 PRO n 1 31 PHE n 1 32 SER n 1 33 PRO n 1 34 ARG n 1 35 THR n 1 36 PHE n 1 37 ARG n 1 38 GLY n 1 39 LEU n 1 40 GLY n 1 41 ASN n 1 42 LYS n 1 43 GLY n 1 44 THR n 1 45 LEU n 1 46 PRO n 1 47 TRP n 1 48 LYS n 1 49 CYS n 1 50 ASN n 1 51 SER n 1 52 VAL n 1 53 ASP n 1 54 MET n 1 55 LYS n 1 56 TYR n 1 57 PHE n 1 58 SER n 1 59 SER n 1 60 VAL n 1 61 THR n 1 62 THR n 1 63 TYR n 1 64 VAL n 1 65 ASP n 1 66 GLU n 1 67 SER n 1 68 LYS n 1 69 TYR n 1 70 GLU n 1 71 LYS n 1 72 LEU n 1 73 LYS n 1 74 TRP n 1 75 LYS n 1 76 ARG n 1 77 GLU n 1 78 ARG n 1 79 TYR n 1 80 LEU n 1 81 ARG n 1 82 MET n 1 83 GLU n 1 84 ALA n 1 85 SER n 1 86 GLN n 1 87 GLY n 1 88 GLY n 1 89 GLY n 1 90 ASP n 1 91 ASN n 1 92 THR n 1 93 SER n 1 94 GLY n 1 95 GLY n 1 96 ASP n 1 97 ASN n 1 98 THR n 1 99 HIS n 1 100 GLY n 1 101 GLY n 1 102 ASP n 1 103 ASN n 1 104 ALA n 1 105 ASP n 1 106 LYS n 1 107 LEU n 1 108 GLN n 1 109 ASN n 1 110 VAL n 1 111 VAL n 1 112 VAL n 1 113 MET n 1 114 GLY n 1 115 ARG n 1 116 SER n 1 117 SER n 1 118 TRP n 1 119 GLU n 1 120 SER n 1 121 ILE n 1 122 PRO n 1 123 LYS n 1 124 GLN n 1 125 TYR n 1 126 LYS n 1 127 PRO n 1 128 LEU n 1 129 PRO n 1 130 ASN n 1 131 ARG n 1 132 ILE n 1 133 ASN n 1 134 VAL n 1 135 VAL n 1 136 LEU n 1 137 SER n 1 138 LYS n 1 139 THR n 1 140 LEU n 1 141 THR n 1 142 LYS n 1 143 GLU n 1 144 ASP n 1 145 VAL n 1 146 LYS n 1 147 GLU n 1 148 LYS n 1 149 VAL n 1 150 PHE n 1 151 ILE n 1 152 ILE n 1 153 ASP n 1 154 SER n 1 155 ILE n 1 156 ASP n 1 157 ASP n 1 158 LEU n 1 159 LEU n 1 160 LEU n 1 161 LEU n 1 162 LEU n 1 163 LYS n 1 164 LYS n 1 165 LEU n 1 166 LYS n 1 167 TYR n 1 168 TYR n 1 169 LYS n 1 170 CYS n 1 171 PHE n 1 172 ILE n 1 173 ILE n 1 174 GLY n 1 175 GLY n 1 176 ALA n 1 177 GLN n 1 178 VAL n 1 179 TYR n 1 180 ARG n 1 181 GLU n 1 182 CYS n 1 183 LEU n 1 184 SER n 1 185 ARG n 1 186 ASN n 1 187 LEU n 1 188 ILE n 1 189 LYS n 1 190 GLN n 1 191 ILE n 1 192 TYR n 1 193 PHE n 1 194 THR n 1 195 ARG n 1 196 ILE n 1 197 ASN n 1 198 GLY n 1 199 ALA n 1 200 TYR n 1 201 PRO n 1 202 CYS n 1 203 ASP n 1 204 VAL n 1 205 PHE n 1 206 PHE n 1 207 PRO n 1 208 GLU n 1 209 PHE n 1 210 ASP n 1 211 GLU n 1 212 SER n 1 213 GLU n 1 214 PHE n 1 215 ARG n 1 216 VAL n 1 217 THR n 1 218 SER n 1 219 VAL n 1 220 SER n 1 221 GLU n 1 222 VAL n 1 223 TYR n 1 224 ASN n 1 225 SER n 1 226 LYS n 1 227 GLY n 1 228 THR n 1 229 THR n 1 230 LEU n 1 231 ASP n 1 232 PHE n 1 233 LEU n 1 234 VAL n 1 235 TYR n 1 236 SER n 1 237 LYS n 1 238 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'PLASMODIUM VIVAX' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 5855 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP Q9TW60_PLAVI 1 ? ? Q9TW60 ? 2 PDB 2BLB 1 ? ? 2BLB ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2BLB A 1 ? 237 ? Q9TW60 1 ? 237 ? 1 237 2 2 2BLB A 238 ? 238 ? 2BLB 238 ? 238 ? 238 238 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2BLB ASN A 3 ? UNP Q9TW60 ASP 3 conflict 3 1 1 2BLB ALA A 24 ? UNP Q9TW60 GLU 24 conflict 24 2 1 2BLB GLU A 213 ? UNP Q9TW60 GLN 213 conflict 213 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CP7 non-polymer . 6-ETHYL-5-PHENYLPYRIMIDINE-2,4-DIAMINE ? 'C12 H14 N4' 214.266 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MES non-polymer . '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' ? 'C6 H13 N O4 S' 195.237 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NDP non-polymer . 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' ? 'C21 H30 N7 O17 P3' 745.421 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2BLB _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.94 _exptl_crystal.density_percent_sol 57.81 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '30%PEG4000, 100MM MES, PH 6.0, 10% GLYCEROL' # _diffrn.id 1 _diffrn.ambient_temp 110.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type NONIUS _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'ENRAF-NONIUS FR591' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2BLB _reflns.observed_criterion_sigma_I 2.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 19.100 _reflns.d_resolution_high 2.900 _reflns.number_obs 7000 _reflns.number_all ? _reflns.percent_possible_obs 98.4 _reflns.pdbx_Rmerge_I_obs 0.08000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 17.1000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.400 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.89 _reflns_shell.d_res_low 3.00 _reflns_shell.percent_possible_all 88.5 _reflns_shell.Rmerge_I_obs 0.42000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.500 _reflns_shell.pdbx_redundancy 3.02 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2BLB _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 6307 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 5.00 _refine.ls_d_res_high 3.00 _refine.ls_percent_reflns_obs 99.9 _refine.ls_R_factor_obs 0.192 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.192 _refine.ls_R_factor_R_free 0.300 _refine.ls_R_factor_R_free_error 0.016 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.5 _refine.ls_number_reflns_R_free 347 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 45.3 _refine.aniso_B[1][1] 20.76 _refine.aniso_B[2][2] -4.85 _refine.aniso_B[3][3] -15.91 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 1.59 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.338446 _refine.solvent_model_param_bsol 49.9701 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 2BLB _refine_analyze.Luzzati_coordinate_error_obs 0.30 _refine_analyze.Luzzati_sigma_a_obs 0.36 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.49 _refine_analyze.Luzzati_sigma_a_free 0.63 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1769 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 76 _refine_hist.number_atoms_solvent 65 _refine_hist.number_atoms_total 1910 _refine_hist.d_res_high 3.00 _refine_hist.d_res_low 5.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.013 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.4 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 22.8 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.90 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 6.67 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 9.24 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 9.70 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 11.64 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 3.00 _refine_ls_shell.d_res_low 3.19 _refine_ls_shell.number_reflns_R_work 975 _refine_ls_shell.R_factor_R_work 0.281 _refine_ls_shell.percent_reflns_obs 99.9 _refine_ls_shell.R_factor_R_free 0.381 _refine_ls_shell.R_factor_R_free_error 0.051 _refine_ls_shell.percent_reflns_R_free 5.3 _refine_ls_shell.number_reflns_R_free 55 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2BLB _struct.title 'X-ray crystal structure of Plasmodium vivax dihydrofolate reductase in complex with pyrimethamine and its derivative' _struct.pdbx_descriptor 'DIHYDROFOLATE REDUCTASE-THYMIDYLATE SYNTHASE (E.C.1.5.1.3)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2BLB _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.text 'DIHYDROFOLATE REDUCTASE, PLAMODIUM VIVAX, PYRIMETHAMINE, MALARIA, DRUG RESISTANCE, OXIDOREDUCTASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 3 ? PHE A 8 ? ASN A 3 PHE A 8 1 ? 6 HELX_P HELX_P2 2 ASN A 50 ? TYR A 63 ? ASN A 50 TYR A 63 1 ? 14 HELX_P HELX_P3 3 ASP A 65 ? SER A 85 ? ASP A 65 SER A 85 1 ? 21 HELX_P HELX_P4 4 ARG A 115 ? SER A 120 ? ARG A 115 SER A 120 1 ? 6 HELX_P HELX_P5 5 PRO A 122 ? LYS A 126 ? PRO A 122 LYS A 126 5 ? 5 HELX_P HELX_P6 6 SER A 154 ? LYS A 164 ? SER A 154 LYS A 164 1 ? 11 HELX_P HELX_P7 7 GLY A 175 ? ARG A 185 ? GLY A 175 ARG A 185 1 ? 11 HELX_P HELX_P8 8 ASP A 210 ? SER A 212 ? ASP A 210 SER A 212 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 LYS 126 A . ? LYS 126 A PRO 127 A ? PRO 127 A 1 -1.22 2 GLY 174 A . ? GLY 174 A GLY 175 A ? GLY 175 A 1 0.33 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 8 ? AB ? 8 ? AC ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? parallel AA 2 3 ? parallel AA 3 4 ? parallel AA 4 5 ? parallel AA 5 6 ? parallel AA 6 7 ? anti-parallel AA 7 8 ? anti-parallel AB 1 2 ? parallel AB 2 3 ? parallel AB 3 4 ? parallel AB 4 5 ? parallel AB 5 6 ? parallel AB 6 7 ? anti-parallel AB 7 8 ? anti-parallel AC 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 PHE A 150 ? ILE A 152 ? PHE A 150 ILE A 152 AA 2 ARG A 131 ? LEU A 136 ? ARG A 131 LEU A 136 AA 3 ASN A 109 ? GLY A 114 ? ASN A 109 GLY A 114 AA 4 CYS A 170 ? GLY A 174 ? CYS A 170 GLY A 174 AA 5 ILE A 10 ? VAL A 19 ? ILE A 10 VAL A 19 AA 6 GLN A 190 ? TYR A 200 ? GLN A 190 TYR A 200 AA 7 THR A 228 ? LYS A 237 ? THR A 228 LYS A 237 AA 8 PHE A 214 ? VAL A 219 ? PHE A 214 VAL A 219 AB 1 PHE A 150 ? ILE A 152 ? PHE A 150 ILE A 152 AB 2 ARG A 131 ? LEU A 136 ? ARG A 131 LEU A 136 AB 3 ASN A 109 ? GLY A 114 ? ASN A 109 GLY A 114 AB 4 CYS A 170 ? GLY A 174 ? CYS A 170 GLY A 174 AB 5 ILE A 10 ? VAL A 19 ? ILE A 10 VAL A 19 AB 6 GLN A 190 ? TYR A 200 ? GLN A 190 TYR A 200 AB 7 THR A 228 ? LYS A 237 ? THR A 228 LYS A 237 AB 8 TYR A 223 ? SER A 225 ? TYR A 223 SER A 225 AC 1 GLY A 38 ? GLY A 40 ? GLY A 38 GLY A 40 AC 2 VAL A 204 ? PHE A 205 ? VAL A 204 PHE A 205 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N PHE A 150 ? N PHE A 150 O ASN A 133 ? O ASN A 133 AA 2 3 N ILE A 132 ? N ILE A 132 O ASN A 109 ? O ASN A 109 AA 3 4 N VAL A 112 ? N VAL A 112 O PHE A 171 ? O PHE A 171 AA 4 5 N ILE A 172 ? N ILE A 172 O TYR A 11 ? O TYR A 11 AA 5 6 N ALA A 12 ? N ALA A 12 O GLN A 190 ? O GLN A 190 AA 6 7 N ASN A 197 ? N ASN A 197 O THR A 229 ? O THR A 229 AA 7 8 N SER A 236 ? N SER A 236 O ARG A 215 ? O ARG A 215 AB 1 2 N PHE A 150 ? N PHE A 150 O ASN A 133 ? O ASN A 133 AB 2 3 N ILE A 132 ? N ILE A 132 O ASN A 109 ? O ASN A 109 AB 3 4 N VAL A 112 ? N VAL A 112 O PHE A 171 ? O PHE A 171 AB 4 5 N ILE A 172 ? N ILE A 172 O TYR A 11 ? O TYR A 11 AB 5 6 N ALA A 12 ? N ALA A 12 O GLN A 190 ? O GLN A 190 AB 6 7 N ASN A 197 ? N ASN A 197 O THR A 229 ? O THR A 229 AB 7 8 N LEU A 230 ? N LEU A 230 O TYR A 223 ? O TYR A 223 AC 1 2 N LEU A 39 ? N LEU A 39 O VAL A 204 ? O VAL A 204 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 26 'BINDING SITE FOR RESIDUE NDP A1239' AC2 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE CP7 A1240' AC3 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE MES A1241' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 26 CYS A 14 ? CYS A 14 . ? 1_555 ? 2 AC1 26 ALA A 15 ? ALA A 15 . ? 1_555 ? 3 AC1 26 LEU A 39 ? LEU A 39 . ? 1_555 ? 4 AC1 26 GLY A 43 ? GLY A 43 . ? 1_555 ? 5 AC1 26 THR A 44 ? THR A 44 . ? 1_555 ? 6 AC1 26 LEU A 45 ? LEU A 45 . ? 1_555 ? 7 AC1 26 TRP A 47 ? TRP A 47 . ? 1_555 ? 8 AC1 26 GLY A 114 ? GLY A 114 . ? 1_555 ? 9 AC1 26 ARG A 115 ? ARG A 115 . ? 1_555 ? 10 AC1 26 SER A 116 ? SER A 116 . ? 1_555 ? 11 AC1 26 SER A 117 ? SER A 117 . ? 1_555 ? 12 AC1 26 SER A 120 ? SER A 120 . ? 1_555 ? 13 AC1 26 LEU A 136 ? LEU A 136 . ? 1_555 ? 14 AC1 26 SER A 137 ? SER A 137 . ? 1_555 ? 15 AC1 26 LYS A 138 ? LYS A 138 . ? 1_555 ? 16 AC1 26 THR A 139 ? THR A 139 . ? 1_555 ? 17 AC1 26 ASP A 153 ? ASP A 153 . ? 1_555 ? 18 AC1 26 SER A 154 ? SER A 154 . ? 1_555 ? 19 AC1 26 ILE A 173 ? ILE A 173 . ? 1_555 ? 20 AC1 26 GLY A 174 ? GLY A 174 . ? 1_555 ? 21 AC1 26 GLY A 175 ? GLY A 175 . ? 1_555 ? 22 AC1 26 ALA A 176 ? ALA A 176 . ? 1_555 ? 23 AC1 26 GLN A 177 ? GLN A 177 . ? 1_555 ? 24 AC1 26 VAL A 178 ? VAL A 178 . ? 1_555 ? 25 AC1 26 CP7 C . ? CP7 A 1240 . ? 1_555 ? 26 AC1 26 HOH E . ? HOH A 2064 . ? 1_555 ? 27 AC2 8 ILE A 13 ? ILE A 13 . ? 1_555 ? 28 AC2 8 CYS A 14 ? CYS A 14 . ? 1_555 ? 29 AC2 8 ASP A 53 ? ASP A 53 . ? 1_555 ? 30 AC2 8 PHE A 57 ? PHE A 57 . ? 1_555 ? 31 AC2 8 ILE A 173 ? ILE A 173 . ? 1_555 ? 32 AC2 8 THR A 194 ? THR A 194 . ? 1_555 ? 33 AC2 8 NDP B . ? NDP A 1239 . ? 1_555 ? 34 AC2 8 MES D . ? MES A 1241 . ? 1_555 ? 35 AC3 6 MET A 54 ? MET A 54 . ? 1_555 ? 36 AC3 6 PHE A 57 ? PHE A 57 . ? 1_555 ? 37 AC3 6 SER A 58 ? SER A 58 . ? 1_555 ? 38 AC3 6 LEU A 128 ? LEU A 128 . ? 1_555 ? 39 AC3 6 ARG A 131 ? ARG A 131 . ? 1_555 ? 40 AC3 6 CP7 C . ? CP7 A 1240 . ? 1_555 ? # _database_PDB_matrix.entry_id 2BLB _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2BLB _atom_sites.fract_transf_matrix[1][1] 0.007664 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002308 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017995 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023070 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 GLU 2 2 2 GLU GLU A . n A 1 3 ASN 3 3 3 ASN ASN A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 ASP 6 6 6 ASP ASP A . n A 1 7 VAL 7 7 7 VAL VAL A . n A 1 8 PHE 8 8 8 PHE PHE A . n A 1 9 ASP 9 9 9 ASP ASP A . n A 1 10 ILE 10 10 10 ILE ILE A . n A 1 11 TYR 11 11 11 TYR TYR A . n A 1 12 ALA 12 12 12 ALA ALA A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 CYS 14 14 14 CYS CYS A . n A 1 15 ALA 15 15 15 ALA ALA A . n A 1 16 CYS 16 16 16 CYS CYS A . n A 1 17 CYS 17 17 17 CYS CYS A . n A 1 18 LYS 18 18 18 LYS LYS A . n A 1 19 VAL 19 19 19 VAL VAL A . n A 1 20 ALA 20 20 20 ALA ALA A . n A 1 21 PRO 21 21 21 PRO PRO A . n A 1 22 THR 22 22 22 THR THR A . n A 1 23 SER 23 23 23 SER SER A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 LYS 27 27 27 LYS LYS A . n A 1 28 ASN 28 28 28 ASN ASN A . n A 1 29 GLU 29 29 29 GLU GLU A . n A 1 30 PRO 30 30 30 PRO PRO A . n A 1 31 PHE 31 31 31 PHE PHE A . n A 1 32 SER 32 32 32 SER SER A . n A 1 33 PRO 33 33 33 PRO PRO A . n A 1 34 ARG 34 34 34 ARG ARG A . n A 1 35 THR 35 35 35 THR THR A . n A 1 36 PHE 36 36 36 PHE PHE A . n A 1 37 ARG 37 37 37 ARG ARG A . n A 1 38 GLY 38 38 38 GLY GLY A . n A 1 39 LEU 39 39 39 LEU LEU A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 ASN 41 41 41 ASN ASN A . n A 1 42 LYS 42 42 42 LYS LYS A . n A 1 43 GLY 43 43 43 GLY GLY A . n A 1 44 THR 44 44 44 THR THR A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 PRO 46 46 46 PRO PRO A . n A 1 47 TRP 47 47 47 TRP TRP A . n A 1 48 LYS 48 48 48 LYS LYS A . n A 1 49 CYS 49 49 49 CYS CYS A . n A 1 50 ASN 50 50 50 ASN ASN A . n A 1 51 SER 51 51 51 SER SER A . n A 1 52 VAL 52 52 52 VAL VAL A . n A 1 53 ASP 53 53 53 ASP ASP A . n A 1 54 MET 54 54 54 MET MET A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 TYR 56 56 56 TYR TYR A . n A 1 57 PHE 57 57 57 PHE PHE A . n A 1 58 SER 58 58 58 SER SER A . n A 1 59 SER 59 59 59 SER SER A . n A 1 60 VAL 60 60 60 VAL VAL A . n A 1 61 THR 61 61 61 THR THR A . n A 1 62 THR 62 62 62 THR THR A . n A 1 63 TYR 63 63 63 TYR TYR A . n A 1 64 VAL 64 64 64 VAL VAL A . n A 1 65 ASP 65 65 65 ASP ASP A . n A 1 66 GLU 66 66 66 GLU GLU A . n A 1 67 SER 67 67 67 SER SER A . n A 1 68 LYS 68 68 68 LYS LYS A . n A 1 69 TYR 69 69 69 TYR TYR A . n A 1 70 GLU 70 70 70 GLU GLU A . n A 1 71 LYS 71 71 71 LYS LYS A . n A 1 72 LEU 72 72 72 LEU LEU A . n A 1 73 LYS 73 73 73 LYS LYS A . n A 1 74 TRP 74 74 74 TRP TRP A . n A 1 75 LYS 75 75 75 LYS LYS A . n A 1 76 ARG 76 76 76 ARG ARG A . n A 1 77 GLU 77 77 77 GLU GLU A . n A 1 78 ARG 78 78 78 ARG ARG A . n A 1 79 TYR 79 79 79 TYR TYR A . n A 1 80 LEU 80 80 80 LEU LEU A . n A 1 81 ARG 81 81 81 ARG ARG A . n A 1 82 MET 82 82 82 MET MET A . n A 1 83 GLU 83 83 83 GLU GLU A . n A 1 84 ALA 84 84 84 ALA ALA A . n A 1 85 SER 85 85 85 SER SER A . n A 1 86 GLN 86 86 86 GLN GLN A . n A 1 87 GLY 87 87 ? ? ? A . n A 1 88 GLY 88 88 ? ? ? A . n A 1 89 GLY 89 89 ? ? ? A . n A 1 90 ASP 90 90 ? ? ? A . n A 1 91 ASN 91 91 ? ? ? A . n A 1 92 THR 92 92 ? ? ? A . n A 1 93 SER 93 93 ? ? ? A . n A 1 94 GLY 94 94 ? ? ? A . n A 1 95 GLY 95 95 ? ? ? A . n A 1 96 ASP 96 96 ? ? ? A . n A 1 97 ASN 97 97 ? ? ? A . n A 1 98 THR 98 98 ? ? ? A . n A 1 99 HIS 99 99 ? ? ? A . n A 1 100 GLY 100 100 ? ? ? A . n A 1 101 GLY 101 101 ? ? ? A . n A 1 102 ASP 102 102 ? ? ? A . n A 1 103 ASN 103 103 ? ? ? A . n A 1 104 ALA 104 104 ? ? ? A . n A 1 105 ASP 105 105 ? ? ? A . n A 1 106 LYS 106 106 106 LYS LYS A . n A 1 107 LEU 107 107 107 LEU LEU A . n A 1 108 GLN 108 108 108 GLN GLN A . n A 1 109 ASN 109 109 109 ASN ASN A . n A 1 110 VAL 110 110 110 VAL VAL A . n A 1 111 VAL 111 111 111 VAL VAL A . n A 1 112 VAL 112 112 112 VAL VAL A . n A 1 113 MET 113 113 113 MET MET A . n A 1 114 GLY 114 114 114 GLY GLY A . n A 1 115 ARG 115 115 115 ARG ARG A . n A 1 116 SER 116 116 116 SER SER A . n A 1 117 SER 117 117 117 SER SER A . n A 1 118 TRP 118 118 118 TRP TRP A . n A 1 119 GLU 119 119 119 GLU GLU A . n A 1 120 SER 120 120 120 SER SER A . n A 1 121 ILE 121 121 121 ILE ILE A . n A 1 122 PRO 122 122 122 PRO PRO A . n A 1 123 LYS 123 123 123 LYS LYS A . n A 1 124 GLN 124 124 124 GLN GLN A . n A 1 125 TYR 125 125 125 TYR TYR A . n A 1 126 LYS 126 126 126 LYS LYS A . n A 1 127 PRO 127 127 127 PRO PRO A . n A 1 128 LEU 128 128 128 LEU LEU A . n A 1 129 PRO 129 129 129 PRO PRO A . n A 1 130 ASN 130 130 130 ASN ASN A . n A 1 131 ARG 131 131 131 ARG ARG A . n A 1 132 ILE 132 132 132 ILE ILE A . n A 1 133 ASN 133 133 133 ASN ASN A . n A 1 134 VAL 134 134 134 VAL VAL A . n A 1 135 VAL 135 135 135 VAL VAL A . n A 1 136 LEU 136 136 136 LEU LEU A . n A 1 137 SER 137 137 137 SER SER A . n A 1 138 LYS 138 138 138 LYS LYS A . n A 1 139 THR 139 139 139 THR THR A . n A 1 140 LEU 140 140 140 LEU LEU A . n A 1 141 THR 141 141 141 THR THR A . n A 1 142 LYS 142 142 142 LYS LYS A . n A 1 143 GLU 143 143 143 GLU GLU A . n A 1 144 ASP 144 144 144 ASP ASP A . n A 1 145 VAL 145 145 145 VAL VAL A . n A 1 146 LYS 146 146 146 LYS LYS A . n A 1 147 GLU 147 147 147 GLU GLU A . n A 1 148 LYS 148 148 148 LYS LYS A . n A 1 149 VAL 149 149 149 VAL VAL A . n A 1 150 PHE 150 150 150 PHE PHE A . n A 1 151 ILE 151 151 151 ILE ILE A . n A 1 152 ILE 152 152 152 ILE ILE A . n A 1 153 ASP 153 153 153 ASP ASP A . n A 1 154 SER 154 154 154 SER SER A . n A 1 155 ILE 155 155 155 ILE ILE A . n A 1 156 ASP 156 156 156 ASP ASP A . n A 1 157 ASP 157 157 157 ASP ASP A . n A 1 158 LEU 158 158 158 LEU LEU A . n A 1 159 LEU 159 159 159 LEU LEU A . n A 1 160 LEU 160 160 160 LEU LEU A . n A 1 161 LEU 161 161 161 LEU LEU A . n A 1 162 LEU 162 162 162 LEU LEU A . n A 1 163 LYS 163 163 163 LYS LYS A . n A 1 164 LYS 164 164 164 LYS LYS A . n A 1 165 LEU 165 165 165 LEU LEU A . n A 1 166 LYS 166 166 166 LYS LYS A . n A 1 167 TYR 167 167 167 TYR TYR A . n A 1 168 TYR 168 168 168 TYR TYR A . n A 1 169 LYS 169 169 169 LYS LYS A . n A 1 170 CYS 170 170 170 CYS CYS A . n A 1 171 PHE 171 171 171 PHE PHE A . n A 1 172 ILE 172 172 172 ILE ILE A . n A 1 173 ILE 173 173 173 ILE ILE A . n A 1 174 GLY 174 174 174 GLY GLY A . n A 1 175 GLY 175 175 175 GLY GLY A . n A 1 176 ALA 176 176 176 ALA ALA A . n A 1 177 GLN 177 177 177 GLN GLN A . n A 1 178 VAL 178 178 178 VAL VAL A . n A 1 179 TYR 179 179 179 TYR TYR A . n A 1 180 ARG 180 180 180 ARG ARG A . n A 1 181 GLU 181 181 181 GLU GLU A . n A 1 182 CYS 182 182 182 CYS CYS A . n A 1 183 LEU 183 183 183 LEU LEU A . n A 1 184 SER 184 184 184 SER SER A . n A 1 185 ARG 185 185 185 ARG ARG A . n A 1 186 ASN 186 186 186 ASN ASN A . n A 1 187 LEU 187 187 187 LEU LEU A . n A 1 188 ILE 188 188 188 ILE ILE A . n A 1 189 LYS 189 189 189 LYS LYS A . n A 1 190 GLN 190 190 190 GLN GLN A . n A 1 191 ILE 191 191 191 ILE ILE A . n A 1 192 TYR 192 192 192 TYR TYR A . n A 1 193 PHE 193 193 193 PHE PHE A . n A 1 194 THR 194 194 194 THR THR A . n A 1 195 ARG 195 195 195 ARG ARG A . n A 1 196 ILE 196 196 196 ILE ILE A . n A 1 197 ASN 197 197 197 ASN ASN A . n A 1 198 GLY 198 198 198 GLY GLY A . n A 1 199 ALA 199 199 199 ALA ALA A . n A 1 200 TYR 200 200 200 TYR TYR A . n A 1 201 PRO 201 201 201 PRO PRO A . n A 1 202 CYS 202 202 202 CYS CYS A . n A 1 203 ASP 203 203 203 ASP ASP A . n A 1 204 VAL 204 204 204 VAL VAL A . n A 1 205 PHE 205 205 205 PHE PHE A . n A 1 206 PHE 206 206 206 PHE PHE A . n A 1 207 PRO 207 207 207 PRO PRO A . n A 1 208 GLU 208 208 208 GLU GLU A . n A 1 209 PHE 209 209 209 PHE PHE A . n A 1 210 ASP 210 210 210 ASP ASP A . n A 1 211 GLU 211 211 211 GLU GLU A . n A 1 212 SER 212 212 212 SER SER A . n A 1 213 GLU 213 213 213 GLU GLU A . n A 1 214 PHE 214 214 214 PHE PHE A . n A 1 215 ARG 215 215 215 ARG ARG A . n A 1 216 VAL 216 216 216 VAL VAL A . n A 1 217 THR 217 217 217 THR THR A . n A 1 218 SER 218 218 218 SER SER A . n A 1 219 VAL 219 219 219 VAL VAL A . n A 1 220 SER 220 220 220 SER SER A . n A 1 221 GLU 221 221 221 GLU GLU A . n A 1 222 VAL 222 222 222 VAL VAL A . n A 1 223 TYR 223 223 223 TYR TYR A . n A 1 224 ASN 224 224 224 ASN ASN A . n A 1 225 SER 225 225 225 SER SER A . n A 1 226 LYS 226 226 226 LYS LYS A . n A 1 227 GLY 227 227 227 GLY GLY A . n A 1 228 THR 228 228 228 THR THR A . n A 1 229 THR 229 229 229 THR THR A . n A 1 230 LEU 230 230 230 LEU LEU A . n A 1 231 ASP 231 231 231 ASP ASP A . n A 1 232 PHE 232 232 232 PHE PHE A . n A 1 233 LEU 233 233 233 LEU LEU A . n A 1 234 VAL 234 234 234 VAL VAL A . n A 1 235 TYR 235 235 235 TYR TYR A . n A 1 236 SER 236 236 236 SER SER A . n A 1 237 LYS 237 237 237 LYS LYS A . n A 1 238 VAL 238 238 238 VAL VAL A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP 1 1239 1239 NDP NDP A . C 3 CP7 1 1240 1240 CP7 CP7 A . D 4 MES 1 1241 1241 MES MES A . E 5 HOH 1 2001 2001 HOH HOH A . E 5 HOH 2 2002 2002 HOH HOH A . E 5 HOH 3 2003 2003 HOH HOH A . E 5 HOH 4 2004 2004 HOH HOH A . E 5 HOH 5 2005 2005 HOH HOH A . E 5 HOH 6 2006 2006 HOH HOH A . E 5 HOH 7 2007 2007 HOH HOH A . E 5 HOH 8 2008 2008 HOH HOH A . E 5 HOH 9 2009 2009 HOH HOH A . E 5 HOH 10 2010 2010 HOH HOH A . E 5 HOH 11 2011 2011 HOH HOH A . E 5 HOH 12 2012 2012 HOH HOH A . E 5 HOH 13 2013 2013 HOH HOH A . E 5 HOH 14 2014 2014 HOH HOH A . E 5 HOH 15 2015 2015 HOH HOH A . E 5 HOH 16 2016 2016 HOH HOH A . E 5 HOH 17 2017 2017 HOH HOH A . E 5 HOH 18 2018 2018 HOH HOH A . E 5 HOH 19 2019 2019 HOH HOH A . E 5 HOH 20 2020 2020 HOH HOH A . E 5 HOH 21 2021 2021 HOH HOH A . E 5 HOH 22 2022 2022 HOH HOH A . E 5 HOH 23 2023 2023 HOH HOH A . E 5 HOH 24 2024 2024 HOH HOH A . E 5 HOH 25 2025 2025 HOH HOH A . E 5 HOH 26 2026 2026 HOH HOH A . E 5 HOH 27 2027 2027 HOH HOH A . E 5 HOH 28 2028 2028 HOH HOH A . E 5 HOH 29 2029 2029 HOH HOH A . E 5 HOH 30 2030 2030 HOH HOH A . E 5 HOH 31 2031 2031 HOH HOH A . E 5 HOH 32 2032 2032 HOH HOH A . E 5 HOH 33 2033 2033 HOH HOH A . E 5 HOH 34 2034 2034 HOH HOH A . E 5 HOH 35 2035 2035 HOH HOH A . E 5 HOH 36 2036 2036 HOH HOH A . E 5 HOH 37 2037 2037 HOH HOH A . E 5 HOH 38 2038 2038 HOH HOH A . E 5 HOH 39 2039 2039 HOH HOH A . E 5 HOH 40 2040 2040 HOH HOH A . E 5 HOH 41 2041 2041 HOH HOH A . E 5 HOH 42 2042 2042 HOH HOH A . E 5 HOH 43 2043 2043 HOH HOH A . E 5 HOH 44 2044 2044 HOH HOH A . E 5 HOH 45 2045 2045 HOH HOH A . E 5 HOH 46 2046 2046 HOH HOH A . E 5 HOH 47 2047 2047 HOH HOH A . E 5 HOH 48 2048 2048 HOH HOH A . E 5 HOH 49 2049 2049 HOH HOH A . E 5 HOH 50 2050 2050 HOH HOH A . E 5 HOH 51 2051 2051 HOH HOH A . E 5 HOH 52 2052 2052 HOH HOH A . E 5 HOH 53 2053 2053 HOH HOH A . E 5 HOH 54 2054 2054 HOH HOH A . E 5 HOH 55 2055 2055 HOH HOH A . E 5 HOH 56 2056 2056 HOH HOH A . E 5 HOH 57 2057 2057 HOH HOH A . E 5 HOH 58 2058 2058 HOH HOH A . E 5 HOH 59 2059 2059 HOH HOH A . E 5 HOH 60 2060 2060 HOH HOH A . E 5 HOH 61 2061 2061 HOH HOH A . E 5 HOH 62 2062 2062 HOH HOH A . E 5 HOH 63 2063 2063 HOH HOH A . E 5 HOH 64 2064 2064 HOH HOH A . E 5 HOH 65 2065 2065 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-09-07 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-06-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 4 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category diffrn_source # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 4 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_diffrn_source.type' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 AMoRE phasing . ? 4 # _pdbx_database_remark.id 700 _pdbx_database_remark.text ; SHEET THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, TWO SHEETS ARE DEFINED. ; # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 SER _pdbx_validate_close_contact.auth_seq_id_1 58 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OG1 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 THR _pdbx_validate_close_contact.auth_seq_id_2 62 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.06 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 29 ? ? -119.53 59.24 2 1 PRO A 30 ? ? -56.60 -4.43 3 1 CYS A 49 ? ? -29.69 107.13 4 1 SER A 67 ? ? -65.92 -70.56 5 1 SER A 120 ? ? -61.35 12.99 6 1 LYS A 123 ? ? -28.77 -35.91 7 1 TYR A 168 ? ? -78.24 -82.26 8 1 LYS A 226 ? ? 61.83 -2.24 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLN 86 ? CA ? A GLN 86 CA 2 1 Y 1 A GLN 86 ? C ? A GLN 86 C 3 1 Y 1 A GLN 86 ? O ? A GLN 86 O 4 1 Y 1 A GLN 86 ? CB ? A GLN 86 CB 5 1 Y 1 A GLN 86 ? CG ? A GLN 86 CG 6 1 Y 1 A GLN 86 ? CD ? A GLN 86 CD 7 1 Y 1 A GLN 86 ? OE1 ? A GLN 86 OE1 8 1 Y 1 A GLN 86 ? NE2 ? A GLN 86 NE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A GLY 87 ? A GLY 87 3 1 Y 1 A GLY 88 ? A GLY 88 4 1 Y 1 A GLY 89 ? A GLY 89 5 1 Y 1 A ASP 90 ? A ASP 90 6 1 Y 1 A ASN 91 ? A ASN 91 7 1 Y 1 A THR 92 ? A THR 92 8 1 Y 1 A SER 93 ? A SER 93 9 1 Y 1 A GLY 94 ? A GLY 94 10 1 Y 1 A GLY 95 ? A GLY 95 11 1 Y 1 A ASP 96 ? A ASP 96 12 1 Y 1 A ASN 97 ? A ASN 97 13 1 Y 1 A THR 98 ? A THR 98 14 1 Y 1 A HIS 99 ? A HIS 99 15 1 Y 1 A GLY 100 ? A GLY 100 16 1 Y 1 A GLY 101 ? A GLY 101 17 1 Y 1 A ASP 102 ? A ASP 102 18 1 Y 1 A ASN 103 ? A ASN 103 19 1 Y 1 A ALA 104 ? A ALA 104 20 1 Y 1 A ASP 105 ? A ASP 105 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' NDP 3 6-ETHYL-5-PHENYLPYRIMIDINE-2,4-DIAMINE CP7 4 '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' MES 5 water HOH #