HEADER TRANSFERASE 07-MAR-05 2BLL TITLE APO-STRUCTURE OF THE C-TERMINAL DECARBOXYLASE DOMAIN OF ARNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN YFBG; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DECARBOXYLASE DOMAIN, RESIDUES 317-660; COMPND 5 SYNONYM: UDP-D-GLUCURONATE DEHYDROGENASE ARNA; COMPND 6 EC: 4.1.1.35; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: W3310; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET24B KEYWDS DECARBOXYLASE, SHORT CHAIN DEHYDROGENASE, L-ARA4N BIOSYNTHESIS, KEYWDS 2 METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.J.WILLIAMS,S.D.BREAZEALE,C.R.H.RAETZ,J.H.NAISMITH REVDAT 5 08-MAY-24 2BLL 1 REMARK REVDAT 4 13-JUL-11 2BLL 1 VERSN REVDAT 3 24-FEB-09 2BLL 1 VERSN REVDAT 2 16-JUN-05 2BLL 1 JRNL REVDAT 1 08-APR-05 2BLL 0 JRNL AUTH G.J.WILLIAMS,S.D.BREAZEALE,C.R.H.RAETZ,J.H.NAISMITH JRNL TITL STRUCTURE AND FUNCTION OF BOTH DOMAINS OF ARNA, A DUAL JRNL TITL 2 FUNCTION DECARBOXYLASE AND A FORMYLTRANSFERASE, INVOLVED IN JRNL TITL 3 4-AMINO-4-DEOXY-L- ARABINOSE BIOSYNTHESIS. JRNL REF J.BIOL.CHEM. V. 280 23000 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 15809294 JRNL DOI 10.1074/JBC.M501534200 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0007 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 87.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 23801 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1275 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1771 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2110 REMARK 3 BIN FREE R VALUE SET COUNT : 88 REMARK 3 BIN FREE R VALUE : 0.2650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2705 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 94 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.209 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.187 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.125 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.846 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2800 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2559 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3790 ; 1.633 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5933 ; 0.899 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 328 ; 6.509 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 149 ;33.940 ;23.154 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 491 ;15.603 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;18.901 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 409 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3091 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 607 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 593 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2693 ; 0.196 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1356 ; 0.182 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1619 ; 0.090 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 123 ; 0.154 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 17 ; 0.131 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 62 ; 0.234 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.253 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2128 ; 1.297 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2684 ; 1.527 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1335 ; 2.449 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1106 ; 3.594 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 320 A 650 REMARK 3 ORIGIN FOR THE GROUP (A): 28.6900 -24.5850 -10.6710 REMARK 3 T TENSOR REMARK 3 T11: -0.0570 T22: -0.0916 REMARK 3 T33: -0.0230 T12: 0.0350 REMARK 3 T13: -0.1054 T23: -0.0347 REMARK 3 L TENSOR REMARK 3 L11: 0.8973 L22: 1.3205 REMARK 3 L33: 1.1927 L12: -0.1018 REMARK 3 L13: 0.1702 L23: -0.0495 REMARK 3 S TENSOR REMARK 3 S11: -0.0905 S12: -0.0074 S13: 0.2103 REMARK 3 S21: -0.0143 S22: 0.0268 S23: -0.1501 REMARK 3 S31: -0.2304 S32: 0.0365 S33: 0.0637 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. A LOOP CONTAINING RESIDUES V604-D615 IS MISSING IN REMARK 3 THE STRUCTURE. THE C-TERMINAL RESIDUES K658-S660 ARE MISSING IN REMARK 3 THE STRUCTURE REMARK 4 REMARK 4 2BLL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-MAR-05. REMARK 100 THE DEPOSITION ID IS D_1290023152. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-NOV-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.20 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : DIAMOND (111), GE(220) REMARK 200 OPTICS : TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25160 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 87.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 16.30 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 11.40 REMARK 200 R MERGE FOR SHELL (I) : 0.37000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.2 M NACL, 0.1 M BIS-TRIS PH 5.2, PH REMARK 280 5.20 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 74.71900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.71900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 74.71900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.71900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 74.71900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 74.71900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 74.71900 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 74.71900 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 74.71900 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 74.71900 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 74.71900 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 74.71900 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 74.71900 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 74.71900 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 74.71900 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 74.71900 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 74.71900 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 74.71900 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 112.07850 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 37.35950 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 37.35950 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 112.07850 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 112.07850 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 112.07850 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 37.35950 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 37.35950 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 112.07850 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 37.35950 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 112.07850 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 37.35950 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 112.07850 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 37.35950 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 37.35950 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 37.35950 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 112.07850 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 37.35950 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 112.07850 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 112.07850 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 112.07850 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 37.35950 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 37.35950 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 112.07850 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 112.07850 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 37.35950 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 37.35950 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 37.35950 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 37.35950 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 112.07850 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 37.35950 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 112.07850 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 37.35950 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 112.07850 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 112.07850 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 112.07850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 37.35950 REMARK 350 BIOMT2 2 0.000000 0.000000 1.000000 -37.35950 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 37.35950 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 604 REMARK 465 SER A 605 REMARK 465 SER A 606 REMARK 465 SER A 607 REMARK 465 TYR A 608 REMARK 465 TYR A 609 REMARK 465 GLY A 610 REMARK 465 LYS A 611 REMARK 465 GLY A 612 REMARK 465 TYR A 613 REMARK 465 GLN A 614 REMARK 465 ASP A 615 REMARK 465 LYS A 658 REMARK 465 PRO A 659 REMARK 465 SER A 660 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 622 C ILE A 623 N -0.139 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 415 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG A 415 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 505 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 510 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 SER A 622 CA - C - N ANGL. DEV. = 16.6 DEGREES REMARK 500 SER A 622 O - C - N ANGL. DEV. = -18.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 373 -75.30 -106.44 REMARK 500 ALA A 391 146.76 -170.92 REMARK 500 PHE A 410 -68.83 -94.87 REMARK 500 SER A 431 -166.71 -73.46 REMARK 500 MET A 438 30.01 -91.13 REMARK 500 ASN A 457 5.42 -69.33 REMARK 500 ARG A 619 75.76 -157.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1U9J RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF E. COLI ARNA (PMRI) DECARBOXYLASE DOMAIN REMARK 999 REMARK 999 SEQUENCE REMARK 999 C-TERMINAL DECARBOXYLASE DOMAIN FROM T316M TO S660 DBREF 2BLL A 316 316 PDB 2BLL 2BLL 316 316 DBREF 2BLL A 317 660 UNP P77398 YFBG_ECOLI 317 660 SEQRES 1 A 345 MET ARG VAL LEU ILE LEU GLY VAL ASN GLY PHE ILE GLY SEQRES 2 A 345 ASN HIS LEU THR GLU ARG LEU LEU ARG GLU ASP HIS TYR SEQRES 3 A 345 GLU VAL TYR GLY LEU ASP ILE GLY SER ASP ALA ILE SER SEQRES 4 A 345 ARG PHE LEU ASN HIS PRO HIS PHE HIS PHE VAL GLU GLY SEQRES 5 A 345 ASP ILE SER ILE HIS SER GLU TRP ILE GLU TYR HIS VAL SEQRES 6 A 345 LYS LYS CYS ASP VAL VAL LEU PRO LEU VAL ALA ILE ALA SEQRES 7 A 345 THR PRO ILE GLU TYR THR ARG ASN PRO LEU ARG VAL PHE SEQRES 8 A 345 GLU LEU ASP PHE GLU GLU ASN LEU ARG ILE ILE ARG TYR SEQRES 9 A 345 CYS VAL LYS TYR ARG LYS ARG ILE ILE PHE PRO SER THR SEQRES 10 A 345 SER GLU VAL TYR GLY MET CYS SER ASP LYS TYR PHE ASP SEQRES 11 A 345 GLU ASP HIS SER ASN LEU ILE VAL GLY PRO VAL ASN LYS SEQRES 12 A 345 PRO ARG TRP ILE TYR SER VAL SER LYS GLN LEU LEU ASP SEQRES 13 A 345 ARG VAL ILE TRP ALA TYR GLY GLU LYS GLU GLY LEU GLN SEQRES 14 A 345 PHE THR LEU PHE ARG PRO PHE ASN TRP MET GLY PRO ARG SEQRES 15 A 345 LEU ASP ASN LEU ASN ALA ALA ARG ILE GLY SER SER ARG SEQRES 16 A 345 ALA ILE THR GLN LEU ILE LEU ASN LEU VAL GLU GLY SER SEQRES 17 A 345 PRO ILE LYS LEU ILE ASP GLY GLY LYS GLN LYS ARG CYS SEQRES 18 A 345 PHE THR ASP ILE ARG ASP GLY ILE GLU ALA LEU TYR ARG SEQRES 19 A 345 ILE ILE GLU ASN ALA GLY ASN ARG CYS ASP GLY GLU ILE SEQRES 20 A 345 ILE ASN ILE GLY ASN PRO GLU ASN GLU ALA SER ILE GLU SEQRES 21 A 345 GLU LEU GLY GLU MET LEU LEU ALA SER PHE GLU LYS HIS SEQRES 22 A 345 PRO LEU ARG HIS HIS PHE PRO PRO PHE ALA GLY PHE ARG SEQRES 23 A 345 VAL VAL GLU SER SER SER TYR TYR GLY LYS GLY TYR GLN SEQRES 24 A 345 ASP VAL GLU HIS ARG LYS PRO SER ILE ARG ASN ALA HIS SEQRES 25 A 345 ARG CYS LEU ASP TRP GLU PRO LYS ILE ASP MET GLN GLU SEQRES 26 A 345 THR ILE ASP GLU THR LEU ASP PHE PHE LEU ARG THR VAL SEQRES 27 A 345 ASP LEU THR ASP LYS PRO SER FORMUL 2 HOH *94(H2 O) HELIX 1 1 GLY A 325 GLU A 338 1 14 HELIX 2 2 SER A 350 LEU A 357 5 8 HELIX 3 3 SER A 373 CYS A 383 1 11 HELIX 4 4 THR A 394 ASN A 401 1 8 HELIX 5 5 ASN A 401 PHE A 410 1 10 HELIX 6 6 PHE A 410 TYR A 423 1 14 HELIX 7 7 THR A 432 TYR A 436 5 5 HELIX 8 8 LYS A 458 ARG A 460 5 3 HELIX 9 9 TRP A 461 GLY A 482 1 22 HELIX 10 10 SER A 509 GLY A 522 1 14 HELIX 11 11 ILE A 528 GLY A 531 5 4 HELIX 12 12 ILE A 540 ASN A 553 1 14 HELIX 13 13 ALA A 554 ARG A 557 5 4 HELIX 14 14 ILE A 574 LYS A 587 1 14 HELIX 15 15 LEU A 590 PHE A 594 5 5 HELIX 16 16 ILE A 623 ASP A 631 1 9 HELIX 17 17 ASP A 637 VAL A 653 1 17 SHEET 1 AA 7 PHE A 362 GLU A 366 0 SHEET 2 AA 7 GLU A 342 ASP A 347 1 O VAL A 343 N HIS A 363 SHEET 3 AA 7 ARG A 317 LEU A 321 1 O VAL A 318 N TYR A 344 SHEET 4 AA 7 VAL A 385 PRO A 388 1 O VAL A 385 N LEU A 319 SHEET 5 AA 7 ARG A 426 PRO A 430 1 O ARG A 426 N VAL A 386 SHEET 6 AA 7 PHE A 485 PRO A 490 1 O THR A 486 N PHE A 429 SHEET 7 AA 7 GLU A 561 ILE A 565 1 O GLU A 561 N LEU A 487 SHEET 1 AB 2 TRP A 493 MET A 494 0 SHEET 2 AB 2 THR A 538 ASP A 539 1 O THR A 538 N MET A 494 SHEET 1 AC 2 ILE A 525 LEU A 527 0 SHEET 2 AC 2 PHE A 600 VAL A 602 1 O ARG A 601 N LEU A 527 SHEET 1 AD 2 LYS A 534 CYS A 536 0 SHEET 2 AD 2 GLU A 571 SER A 573 -1 O ALA A 572 N ARG A 535 CRYST1 149.438 149.438 149.438 90.00 90.00 90.00 P 41 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006692 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006692 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006692 0.00000