HEADER ELONGATION FACTOR 09-MAR-05 2BM0 TITLE RIBOSOMAL ELONGATION FACTOR G (EF-G) FUSIDIC ACID RESISTANT MUTANT TITLE 2 T84A COMPND MOL_ID: 1; COMPND 2 MOLECULE: ELONGATION FACTOR G; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EF-G; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 274; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET13A KEYWDS SWITCH II, ELONGATION FACTOR, GTP-BINDING, TRANSLATION MUTATION KEYWDS 2 THR84ALA, PROTEIN BIOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR S.HANSSON,R.SINGH,A.T.GUDKOV,A.LILJAS,D.T.LOGAN REVDAT 4 13-DEC-23 2BM0 1 LINK REVDAT 3 17-JAN-18 2BM0 1 REMARK REVDAT 2 24-FEB-09 2BM0 1 VERSN REVDAT 1 04-MAY-05 2BM0 0 JRNL AUTH S.HANSSON,R.SINGH,A.T.GUDKOV,A.LILJAS,D.T.LOGAN JRNL TITL STRUCTURAL INSIGHTS INTO FUSIDIC ACID RESISTANCE AND JRNL TITL 2 SENSITIVITY IN EF-G JRNL REF J.MOL.BIOL. V. 348 939 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 15843024 JRNL DOI 10.1016/J.JMB.2005.02.066 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.CZWORKOWSKI,J.WANG,T.A.STEITZ,P.B.MOORE REMARK 1 TITL THE CRYSTAL STRUCTURE OF ELONGATION FACTOR G COMPLEXED WITH REMARK 1 TITL 2 GDP, AT 2.7 A RESOLUTION REMARK 1 REF EMBO J. V. 13 3661 1994 REMARK 1 REFN ISSN 0261-4189 REMARK 1 PMID 8070396 REMARK 1 REFERENCE 2 REMARK 1 AUTH A.AEVARSSON,E.BRAZHNIKOV,M.GARBER,J.ZHELTONOSOVA, REMARK 1 AUTH 2 Y.CHIRGADZE,S.AL-KARADAGHI,L.A.SVENSSON,A.LILJAS REMARK 1 TITL THREE-DIMENSIONAL STRUCTURE OF THE RIBOSOMAL TRANSLOCASE: REMARK 1 TITL 2 ELONGATION FACTOR G FROM THERMUS THERMOPHILUS REMARK 1 REF EMBO J. V. 13 3669 1994 REMARK 1 REFN ISSN 0261-4189 REMARK 1 PMID 8070397 REMARK 1 REFERENCE 3 REMARK 1 AUTH S.AL-KARADAGHI,A.AEVARSSON,M.GARBER,J.ZHELTONOSOVA,A.LILJAS REMARK 1 TITL THE STRUCTURE OF ELONGATION FACTOR G IN COMPLEX WITH GDP: REMARK 1 TITL 2 CONFORMATIONAL FLEXIBILITY AND NUCLEOTIDE EXCHANGE REMARK 1 REF STRUCTURE V. 4 555 1996 REMARK 1 REFN ISSN 0969-2126 REMARK 1 PMID 8736554 REMARK 1 DOI 10.1016/S0969-2126(96)00061-5 REMARK 1 REFERENCE 4 REMARK 1 AUTH M.LAURBERG,O.KRISTENSEN,K.MARTEMYANOV,A.T.GUDKOV,I.NAGAEV, REMARK 1 AUTH 2 D.HUGHES,A.LILJAS REMARK 1 TITL STRUCTURE OF A MUTANT EF-G REVEALS DOMAIN III AND POSSIBLY REMARK 1 TITL 2 THE FUSIDIC ACID BINDING SITE REMARK 1 REF J.MOL.BIOL. V. 303 593 2000 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 11054294 REMARK 1 DOI 10.1006/JMBI.2000.4168 REMARK 1 REFERENCE 5 REMARK 1 AUTH K.A.MARTEMYANOV,A.LILJAS,A.S.YARUNIN,A.T.GUDKOV REMARK 1 TITL MUTATIONS IN THE G-DOMAIN OF ELONGATION FACTOR G FROM REMARK 1 TITL 2 THERMUS THERMOPHILUS AFFECT BOTH ITS INTERACTION WITH GTP REMARK 1 TITL 3 AND FUSIDIC ACID. REMARK 1 REF J.BIOL.CHEM. V. 276 28774 2001 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 11371559 REMARK 1 DOI 10.1074/JBC.M102023200 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.500 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 27567 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5190 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 144 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5289 ; 0.013 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5289 ; 1.520 ; 1.470 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2BM0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-MAR-05. REMARK 100 THE DEPOSITION ID IS D_1290023151. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-APR-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.30 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I711 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9871 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27567 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.400 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP, CCP4 REMARK 200 STARTING MODEL: PDB ENTRY 1FNM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17% PEG 8000 100 MM HEPES 46 MM TRIS REMARK 280 -HCL PH 7.3, PH 7.30 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.10000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.45000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.25000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.45000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.10000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.25000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, THR 84 TO ALA REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 VAL A 3 REMARK 465 GLU A 44 REMARK 465 VAL A 45 REMARK 465 HIS A 46 REMARK 465 GLU A 47 REMARK 465 GLY A 48 REMARK 465 ALA A 49 REMARK 465 ALA A 50 REMARK 465 THR A 51 REMARK 465 MET A 52 REMARK 465 ASP A 53 REMARK 465 PHE A 54 REMARK 465 MET A 55 REMARK 465 GLU A 56 REMARK 465 GLN A 57 REMARK 465 GLU A 58 REMARK 465 ARG A 59 REMARK 465 GLU A 60 REMARK 465 ARG A 61 REMARK 465 GLY A 62 REMARK 465 ILE A 63 REMARK 465 GLY A 690 REMARK 465 GLN A 691 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 4 CG CD CE NZ REMARK 470 LYS A 41 CG CD CE NZ REMARK 470 ILE A 42 CG1 CG2 CD1 REMARK 470 THR A 64 OG1 CG2 REMARK 470 VAL A 114 CG1 CG2 REMARK 470 GLU A 241 CG CD OE1 OE2 REMARK 470 LYS A 689 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2082 O HOH A 2105 1.75 REMARK 500 OD1 ASP A 562 O HOH A 2122 1.85 REMARK 500 O HOH A 2045 O HOH A 2069 2.09 REMARK 500 O HOH A 2013 O HOH A 2069 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 85 C GLY A 86 N 0.293 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 13 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ALA A 84 C - N - CA ANGL. DEV. = 16.5 DEGREES REMARK 500 ALA A 84 CA - C - N ANGL. DEV. = -18.2 DEGREES REMARK 500 ALA A 84 O - C - N ANGL. DEV. = 21.2 DEGREES REMARK 500 PRO A 85 C - N - CA ANGL. DEV. = -19.6 DEGREES REMARK 500 PRO A 85 C - N - CD ANGL. DEV. = 18.7 DEGREES REMARK 500 ASP A 191 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP A 195 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 224 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 285 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 658 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 5 152.38 166.89 REMARK 500 GLU A 6 -53.66 -175.44 REMARK 500 LYS A 41 -47.91 -147.78 REMARK 500 ALA A 84 -22.56 148.15 REMARK 500 ASP A 89 -19.03 94.14 REMARK 500 GLU A 171 -122.52 54.26 REMARK 500 PHE A 174 107.38 -57.76 REMARK 500 GLU A 198 103.79 -53.10 REMARK 500 TYR A 321 -64.65 -123.57 REMARK 500 LYS A 346 -163.97 -72.67 REMARK 500 LEU A 380 90.82 47.88 REMARK 500 THR A 446 -76.08 -117.04 REMARK 500 ARG A 468 -62.75 -104.55 REMARK 500 TYR A 568 -9.85 -141.23 REMARK 500 ASP A 674 -55.97 -120.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 83 ALA A 84 143.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1691 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 26 OG1 REMARK 620 2 GDP A1690 O2B 78.7 REMARK 620 N 1 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AD" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 7-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 8-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1691 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A1690 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DAR RELATED DB: PDB REMARK 900 ELONGATION FACTOR G IN COMPLEX WITH GDP REMARK 900 RELATED ID: 1EFG RELATED DB: PDB REMARK 900 ELONGATION FACTOR G COMPLEXED WITH GUANOSINE 5'-DIPHOSPHATE REMARK 900 RELATED ID: 1ELO RELATED DB: PDB REMARK 900 ELONGATION FACTOR G WITHOUT NUCLEOTIDE REMARK 900 RELATED ID: 1FNM RELATED DB: PDB REMARK 900 STRUCTURE OF THERMUS THERMOPHILUS EF-G H573A REMARK 900 RELATED ID: 1IP8 RELATED DB: PDB REMARK 900 RIBOSOMAL RNAS AND PROTEINS AS WELL AS FACTORS IN THE PRE- REMARK 900 TRANSLOCATIONAL STATE REMARK 900 RELATED ID: 1IPM RELATED DB: PDB REMARK 900 RIBOSOMAL RNAS AND PROTEINS AS WELL AS FACTORS REMARK 900 RELATED ID: 1IPO RELATED DB: PDB REMARK 900 RIBOSOMAL RNAS AND PROTEINS AS WELL AS FACTORS REMARK 900 RELATED ID: 1IPR RELATED DB: PDB REMARK 900 RIBOSOMAL RNAS AND PROTEINS AS WELL AS FACTORS REMARK 900 RELATED ID: 1JQM RELATED DB: PDB REMARK 900 FITTING OF L11 PROTEIN AND ELONGATION FACTOR G (EF-G) INTHE CRYO-EM REMARK 900 MAP OF E. COLI 70S RIBOSOME BOUND WITH EF-G,GDP AND FUSIDIC ACID REMARK 900 RELATED ID: 1JQS RELATED DB: PDB REMARK 900 FITTING OF L11 PROTEIN AND ELONGATION FACTOR G (DOMAIN G'AND V) IN REMARK 900 THE CRYO-EM MAP OF E. COLI 70S RIBOSOME BOUNDWITH EF- G AND GMPPCP, REMARK 900 A NONHYDROLYSABLE GTP ANALOG REMARK 900 RELATED ID: 1KTV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ELONGATION FACTOR G DIMER WITHOUTNUCLEOTIDE REMARK 900 RELATED ID: 1PN6 RELATED DB: PDB REMARK 900 DOMAIN-WISE FITTING OF THE CRYSTAL STRUCTURE OFT.THERMOPHILUS EF-G REMARK 900 INTO THE LOW RESOLUTION MAP OF THERELEASE COMPLEX.PUROMYCIN REMARK 900 .EFG.GDPNP OF E.COLI 70S RIBOSOME. REMARK 900 RELATED ID: 2EFG RELATED DB: PDB REMARK 900 TRANSLATIONAL ELONGATION FACTOR G COMPLEXED WITH GDP REMARK 900 RELATED ID: 2BM1 RELATED DB: PDB REMARK 900 RIBOSOMAL ELONGATION FACTOR G (EF-G) FUSIDIC ACID RESISTANT MUTANT REMARK 900 G16V DBREF 2BM0 A 1 691 UNP P13551 EFG_THETH 1 691 SEQADV 2BM0 ALA A 43 UNP P13551 GLY 43 CONFLICT SEQADV 2BM0 ALA A 84 UNP P13551 THR 84 ENGINEERED MUTATION SEQRES 1 A 691 MET ALA VAL LYS VAL GLU TYR ASP LEU LYS ARG LEU ARG SEQRES 2 A 691 ASN ILE GLY ILE ALA ALA HIS ILE ASP ALA GLY LYS THR SEQRES 3 A 691 THR THR THR GLU ARG ILE LEU TYR TYR THR GLY ARG ILE SEQRES 4 A 691 HIS LYS ILE ALA GLU VAL HIS GLU GLY ALA ALA THR MET SEQRES 5 A 691 ASP PHE MET GLU GLN GLU ARG GLU ARG GLY ILE THR ILE SEQRES 6 A 691 THR ALA ALA VAL THR THR CYS PHE TRP LYS ASP HIS ARG SEQRES 7 A 691 ILE ASN ILE ILE ASP ALA PRO GLY HIS VAL ASP PHE THR SEQRES 8 A 691 ILE GLU VAL GLU ARG SER MET ARG VAL LEU ASP GLY ALA SEQRES 9 A 691 ILE VAL VAL PHE ASP SER SER GLN GLY VAL GLU PRO GLN SEQRES 10 A 691 SER GLU THR VAL TRP ARG GLN ALA GLU LYS TYR LYS VAL SEQRES 11 A 691 PRO ARG ILE ALA PHE ALA ASN LYS MET ASP LYS THR GLY SEQRES 12 A 691 ALA ASP LEU TRP LEU VAL ILE ARG THR MET GLN GLU ARG SEQRES 13 A 691 LEU GLY ALA ARG PRO VAL VAL MET GLN LEU PRO ILE GLY SEQRES 14 A 691 ARG GLU ASP THR PHE SER GLY ILE ILE ASP VAL LEU ARG SEQRES 15 A 691 MET LYS ALA TYR THR TYR GLY ASN ASP LEU GLY THR ASP SEQRES 16 A 691 ILE ARG GLU ILE PRO ILE PRO GLU GLU TYR LEU ASP GLN SEQRES 17 A 691 ALA ARG GLU TYR HIS GLU LYS LEU VAL GLU VAL ALA ALA SEQRES 18 A 691 ASP PHE ASP GLU ASN ILE MET LEU LYS TYR LEU GLU GLY SEQRES 19 A 691 GLU GLU PRO THR GLU GLU GLU LEU VAL ALA ALA ILE ARG SEQRES 20 A 691 LYS GLY THR ILE ASP LEU LYS ILE THR PRO VAL PHE LEU SEQRES 21 A 691 GLY SER ALA LEU LYS ASN LYS GLY VAL GLN LEU LEU LEU SEQRES 22 A 691 ASP ALA VAL VAL ASP TYR LEU PRO SER PRO LEU ASP ILE SEQRES 23 A 691 PRO PRO ILE LYS GLY THR THR PRO GLU GLY GLU VAL VAL SEQRES 24 A 691 GLU ILE HIS PRO ASP PRO ASN GLY PRO LEU ALA ALA LEU SEQRES 25 A 691 ALA PHE LYS ILE MET ALA ASP PRO TYR VAL GLY ARG LEU SEQRES 26 A 691 THR PHE ILE ARG VAL TYR SER GLY THR LEU THR SER GLY SEQRES 27 A 691 SER TYR VAL TYR ASN THR THR LYS GLY ARG LYS GLU ARG SEQRES 28 A 691 VAL ALA ARG LEU LEU ARG MET HIS ALA ASN HIS ARG GLU SEQRES 29 A 691 GLU VAL GLU GLU LEU LYS ALA GLY ASP LEU GLY ALA VAL SEQRES 30 A 691 VAL GLY LEU LYS GLU THR ILE THR GLY ASP THR LEU VAL SEQRES 31 A 691 GLY GLU ASP ALA PRO ARG VAL ILE LEU GLU SER ILE GLU SEQRES 32 A 691 VAL PRO GLU PRO VAL ILE ASP VAL ALA ILE GLU PRO LYS SEQRES 33 A 691 THR LYS ALA ASP GLN GLU LYS LEU SER GLN ALA LEU ALA SEQRES 34 A 691 ARG LEU ALA GLU GLU ASP PRO THR PHE ARG VAL SER THR SEQRES 35 A 691 HIS PRO GLU THR GLY GLN THR ILE ILE SER GLY MET GLY SEQRES 36 A 691 GLU LEU HIS LEU GLU ILE ILE VAL ASP ARG LEU LYS ARG SEQRES 37 A 691 GLU PHE LYS VAL ASP ALA ASN VAL GLY LYS PRO GLN VAL SEQRES 38 A 691 ALA TYR ARG GLU THR ILE THR LYS PRO VAL ASP VAL GLU SEQRES 39 A 691 GLY LYS PHE ILE ARG GLN THR GLY GLY ARG GLY GLN TYR SEQRES 40 A 691 GLY HIS VAL LYS ILE LYS VAL GLU PRO LEU PRO ARG GLY SEQRES 41 A 691 SER GLY PHE GLU PHE VAL ASN ALA ILE VAL GLY GLY VAL SEQRES 42 A 691 ILE PRO LYS GLU TYR ILE PRO ALA VAL GLN LYS GLY ILE SEQRES 43 A 691 GLU GLU ALA MET GLN SER GLY PRO LEU ILE GLY PHE PRO SEQRES 44 A 691 VAL VAL ASP ILE LYS VAL THR LEU TYR ASP GLY SER TYR SEQRES 45 A 691 HIS GLU VAL ASP SER SER GLU MET ALA PHE LYS ILE ALA SEQRES 46 A 691 GLY SER MET ALA ILE LYS GLU ALA VAL GLN LYS GLY ASP SEQRES 47 A 691 PRO VAL ILE LEU GLU PRO ILE MET ARG VAL GLU VAL THR SEQRES 48 A 691 THR PRO GLU GLU TYR MET GLY ASP VAL ILE GLY ASP LEU SEQRES 49 A 691 ASN ALA ARG ARG GLY GLN ILE LEU GLY MET GLU PRO ARG SEQRES 50 A 691 GLY ASN ALA GLN VAL ILE ARG ALA PHE VAL PRO LEU ALA SEQRES 51 A 691 GLU MET PHE GLY TYR ALA THR ASP LEU ARG SER LYS THR SEQRES 52 A 691 GLN GLY ARG GLY SER PHE VAL MET PHE PHE ASP HIS TYR SEQRES 53 A 691 GLN GLU VAL PRO LYS GLN VAL GLN GLU LYS LEU ILE LYS SEQRES 54 A 691 GLY GLN HET GDP A1690 28 HET MG A1691 1 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 2 GDP C10 H15 N5 O11 P2 FORMUL 3 MG MG 2+ FORMUL 4 HOH *144(H2 O) HELIX 1 1 ASP A 8 LYS A 10 5 3 HELIX 2 2 GLY A 24 GLY A 37 1 14 HELIX 3 3 PHE A 90 LEU A 101 1 12 HELIX 4 4 GLN A 117 TYR A 128 1 12 HELIX 5 5 ASP A 145 ARG A 156 1 12 HELIX 6 6 ARG A 170 PHE A 174 5 5 HELIX 7 7 PRO A 202 GLU A 204 5 3 HELIX 8 8 TYR A 205 ALA A 221 1 17 HELIX 9 9 ASP A 224 GLY A 234 1 11 HELIX 10 10 THR A 238 ASP A 252 1 15 HELIX 11 11 GLY A 268 LEU A 280 1 13 HELIX 12 12 LYS A 418 ARG A 430 1 13 HELIX 13 13 ARG A 430 ASP A 435 1 6 HELIX 14 14 GLY A 455 ARG A 468 1 14 HELIX 15 15 PRO A 535 GLU A 537 5 3 HELIX 16 16 TYR A 538 GLN A 551 1 14 HELIX 17 17 SER A 578 GLY A 597 1 20 HELIX 18 18 PRO A 613 GLU A 615 5 3 HELIX 19 19 TYR A 616 ARG A 627 1 12 HELIX 20 20 ALA A 650 MET A 652 5 3 HELIX 21 21 GLY A 654 THR A 663 1 10 HELIX 22 22 PRO A 680 LEU A 687 1 8 SHEET 1 AA 7 VAL A 69 TRP A 74 0 SHEET 2 AA 7 HIS A 77 ILE A 82 -1 O HIS A 77 N TRP A 74 SHEET 3 AA 7 LEU A 12 ALA A 19 1 O ARG A 13 N ASN A 80 SHEET 4 AA 7 GLY A 103 PHE A 108 1 O GLY A 103 N GLY A 16 SHEET 5 AA 7 ARG A 132 ALA A 136 1 O ILE A 133 N VAL A 106 SHEET 6 AA 7 THR A 256 LEU A 260 1 O PRO A 257 N ALA A 134 SHEET 7 AA 7 PRO A 161 VAL A 163 1 O VAL A 162 N VAL A 258 SHEET 1 AB 4 GLN A 165 ILE A 168 0 SHEET 2 AB 4 GLY A 176 ASP A 179 -1 O GLY A 176 N ILE A 168 SHEET 3 AB 4 LYS A 184 TYR A 188 -1 O LYS A 184 N ASP A 179 SHEET 4 AB 4 ILE A 196 ILE A 199 -1 O ARG A 197 N THR A 187 SHEET 1 AC 2 ILE A 289 THR A 292 0 SHEET 2 AC 2 VAL A 298 ILE A 301 -1 O VAL A 299 N GLY A 291 SHEET 1 AD 8 ALA A 310 MET A 317 0 SHEET 2 AD 8 LEU A 325 SER A 332 -1 O LEU A 325 N MET A 317 SHEET 3 AD 8 LEU A 374 GLY A 379 -1 O GLY A 375 N ILE A 328 SHEET 4 AD 8 ARG A 348 MET A 358 1 N ALA A 353 O VAL A 378 SHEET 5 AD 8 TYR A 340 ASN A 343 -1 O VAL A 341 N GLU A 350 SHEET 6 AD 8 THR A 388 VAL A 390 -1 O VAL A 390 N TYR A 342 SHEET 7 AD 8 ALA A 310 MET A 317 -1 O ALA A 311 N LEU A 389 SHEET 8 AD 8 ALA A 310 MET A 317 0 SHEET 1 AE 2 THR A 334 THR A 336 0 SHEET 2 AE 2 GLU A 368 LYS A 370 -1 O LEU A 369 N LEU A 335 SHEET 1 AF 7 ARG A 439 THR A 442 0 SHEET 2 AF 7 THR A 449 GLY A 453 -1 O ILE A 450 N SER A 441 SHEET 3 AF 7 ILE A 409 PRO A 415 -1 O ILE A 409 N GLY A 453 SHEET 4 AF 7 ALA A 474 VAL A 476 -1 O ASN A 475 N GLU A 414 SHEET 5 AF 7 ILE A 409 PRO A 415 -1 O GLU A 414 N ASN A 475 SHEET 6 AF 7 GLN A 480 VAL A 481 -1 O GLN A 480 N ASP A 410 SHEET 7 AF 7 ILE A 409 PRO A 415 -1 O ASP A 410 N GLN A 480 SHEET 1 AG 7 ARG A 484 THR A 486 0 SHEET 2 AG 7 VAL A 600 THR A 612 -1 O VAL A 600 N THR A 486 SHEET 3 AG 7 GLN A 630 ARG A 637 0 SHEET 4 AG 7 ALA A 640 PRO A 648 -1 O ALA A 640 N ARG A 637 SHEET 5 AG 7 VAL A 600 THR A 612 -1 O MET A 606 N VAL A 647 SHEET 6 AG 7 SER A 668 GLU A 678 -1 O SER A 668 N THR A 611 SHEET 7 AG 7 VAL A 600 THR A 612 -1 O GLU A 603 N GLN A 677 SHEET 1 AH 4 VAL A 491 THR A 501 0 SHEET 2 AH 4 ARG A 504 PRO A 516 -1 O ARG A 504 N THR A 501 SHEET 3 AH 4 ILE A 563 SER A 571 -1 O LYS A 564 N GLU A 515 SHEET 4 AH 4 PHE A 523 ASN A 527 1 O GLU A 524 N VAL A 565 LINK OG1 THR A 26 MG MG A1691 1555 1555 2.30 LINK O2B GDP A1690 MG MG A1691 1555 1555 2.32 CISPEP 1 ILE A 65 THR A 66 0 9.24 CISPEP 2 PRO A 85 GLY A 86 0 -2.62 CISPEP 3 GLY A 86 HIS A 87 0 8.19 CISPEP 4 HIS A 87 VAL A 88 0 25.17 SITE 1 AC1 2 THR A 26 GDP A1690 SITE 1 AC2 18 HIS A 20 ASP A 22 ALA A 23 GLY A 24 SITE 2 AC2 18 LYS A 25 THR A 26 THR A 27 ASN A 137 SITE 3 AC2 18 LYS A 138 ASP A 140 LYS A 141 SER A 262 SITE 4 AC2 18 ALA A 263 LEU A 264 TYR A 342 GLY A 347 SITE 5 AC2 18 MG A1691 HOH A2144 CRYST1 78.200 88.500 116.900 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012788 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011299 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008554 0.00000