data_2BMD # _entry.id 2BMD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.308 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2BMD PDBE EBI-23276 WWPDB D_1290023276 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2BME _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'HIGH RESOLUTION STRUCTURE OF GPPNHP-BOUND HUMAN RAB4A' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2BMD _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2005-03-13 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Scheidig, A.J.' 1 'Huber, S.K.' 2 # _citation.id primary _citation.title 'High Resolution Crystal Structures of Human Rab4A in its Active and Inactive Conformations.' _citation.journal_abbrev 'FEBS Lett.' _citation.journal_volume 579 _citation.page_first 2821 _citation.page_last ? _citation.year 2005 _citation.journal_id_ASTM FEBLAL _citation.country NE _citation.journal_id_ISSN 0014-5793 _citation.journal_id_CSD 0165 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15907487 _citation.pdbx_database_id_DOI 10.1016/J.FEBSLET.2005.04.020 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Huber, S.K.' 1 ? primary 'Scheidig, A.J.' 2 ? # _cell.entry_id 2BMD _cell.length_a 71.140 _cell.length_b 63.750 _cell.length_c 38.280 _cell.angle_alpha 90.00 _cell.angle_beta 100.03 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BMD _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RAS-RELATED PROTEIN RAB4A' 20990.775 1 3.6.5.2 ? 'NUCLEOTIDE-BINDING DOMAIN, RESIDUES 1-184' ? 2 non-polymer syn "GUANOSINE-5'-DIPHOSPHATE" 443.201 1 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 2 ? ? ? ? 4 water nat water 18.015 208 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name RAB4A # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GHMSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYY RGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENV EEAFVQCARKILNKIESGELDPERMG ; _entity_poly.pdbx_seq_one_letter_code_can ;GHMSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYY RGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENV EEAFVQCARKILNKIESGELDPERMG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 HIS n 1 3 MET n 1 4 SER n 1 5 GLU n 1 6 THR n 1 7 TYR n 1 8 ASP n 1 9 PHE n 1 10 LEU n 1 11 PHE n 1 12 LYS n 1 13 PHE n 1 14 LEU n 1 15 VAL n 1 16 ILE n 1 17 GLY n 1 18 ASN n 1 19 ALA n 1 20 GLY n 1 21 THR n 1 22 GLY n 1 23 LYS n 1 24 SER n 1 25 CYS n 1 26 LEU n 1 27 LEU n 1 28 HIS n 1 29 GLN n 1 30 PHE n 1 31 ILE n 1 32 GLU n 1 33 LYS n 1 34 LYS n 1 35 PHE n 1 36 LYS n 1 37 ASP n 1 38 ASP n 1 39 SER n 1 40 ASN n 1 41 HIS n 1 42 THR n 1 43 ILE n 1 44 GLY n 1 45 VAL n 1 46 GLU n 1 47 PHE n 1 48 GLY n 1 49 SER n 1 50 LYS n 1 51 ILE n 1 52 ILE n 1 53 ASN n 1 54 VAL n 1 55 GLY n 1 56 GLY n 1 57 LYS n 1 58 TYR n 1 59 VAL n 1 60 LYS n 1 61 LEU n 1 62 GLN n 1 63 ILE n 1 64 TRP n 1 65 ASP n 1 66 THR n 1 67 ALA n 1 68 GLY n 1 69 GLN n 1 70 GLU n 1 71 ARG n 1 72 PHE n 1 73 ARG n 1 74 SER n 1 75 VAL n 1 76 THR n 1 77 ARG n 1 78 SER n 1 79 TYR n 1 80 TYR n 1 81 ARG n 1 82 GLY n 1 83 ALA n 1 84 ALA n 1 85 GLY n 1 86 ALA n 1 87 LEU n 1 88 LEU n 1 89 VAL n 1 90 TYR n 1 91 ASP n 1 92 ILE n 1 93 THR n 1 94 SER n 1 95 ARG n 1 96 GLU n 1 97 THR n 1 98 TYR n 1 99 ASN n 1 100 ALA n 1 101 LEU n 1 102 THR n 1 103 ASN n 1 104 TRP n 1 105 LEU n 1 106 THR n 1 107 ASP n 1 108 ALA n 1 109 ARG n 1 110 MET n 1 111 LEU n 1 112 ALA n 1 113 SER n 1 114 GLN n 1 115 ASN n 1 116 ILE n 1 117 VAL n 1 118 ILE n 1 119 ILE n 1 120 LEU n 1 121 CYS n 1 122 GLY n 1 123 ASN n 1 124 LYS n 1 125 LYS n 1 126 ASP n 1 127 LEU n 1 128 ASP n 1 129 ALA n 1 130 ASP n 1 131 ARG n 1 132 GLU n 1 133 VAL n 1 134 THR n 1 135 PHE n 1 136 LEU n 1 137 GLU n 1 138 ALA n 1 139 SER n 1 140 ARG n 1 141 PHE n 1 142 ALA n 1 143 GLN n 1 144 GLU n 1 145 ASN n 1 146 GLU n 1 147 LEU n 1 148 MET n 1 149 PHE n 1 150 LEU n 1 151 GLU n 1 152 THR n 1 153 SER n 1 154 ALA n 1 155 LEU n 1 156 THR n 1 157 GLY n 1 158 GLU n 1 159 ASN n 1 160 VAL n 1 161 GLU n 1 162 GLU n 1 163 ALA n 1 164 PHE n 1 165 VAL n 1 166 GLN n 1 167 CYS n 1 168 ALA n 1 169 ARG n 1 170 LYS n 1 171 ILE n 1 172 LEU n 1 173 ASN n 1 174 LYS n 1 175 ILE n 1 176 GLU n 1 177 SER n 1 178 GLY n 1 179 GLU n 1 180 LEU n 1 181 ASP n 1 182 PRO n 1 183 GLU n 1 184 ARG n 1 185 MET n 1 186 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET19TEV _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 2BMD 1 ? ? 2BMD ? 2 UNP RAB4A_HUMAN 1 ? ? P20338 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2BMD A 1 ? 2 ? 2BMD 1 ? 2 ? 1 2 2 2 2BMD A 3 ? 186 ? P20338 1 ? 184 ? 3 186 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GDP 'RNA linking' n "GUANOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O11 P2' 443.201 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2BMD _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.79 _exptl_crystal.density_percent_sol 30.68 _exptl_crystal.description 'PARTIALLY REFINED GPPNHP-BOUND RAB4A STRUCTURE WAS USED FOR MOLECULAR REPLACEMENT, SOLVED BY SAME AUTHORS' # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '30% (W/V) PEG 8000, 200MM AMMONIUM SULPHATE, 100MM SODIUM CACODYLATE PH6.5 HANGING DROP 20 DEGREE CELSIUS' # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2003-06-03 _diffrn_detector.details MIRROR # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator MIRROR _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0721 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'BESSY BEAMLINE 14.1' _diffrn_source.pdbx_synchrotron_site BESSY _diffrn_source.pdbx_synchrotron_beamline 14.1 _diffrn_source.pdbx_wavelength 1.0721 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2BMD _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.000 _reflns.d_resolution_high 1.800 _reflns.number_obs 15669 _reflns.number_all ? _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.07000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 14.4400 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.300 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.86 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.20000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 7.500 _reflns_shell.pdbx_redundancy ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2BMD _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 14883 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 18.29 _refine.ls_d_res_high 1.80 _refine.ls_percent_reflns_obs 99.9 _refine.ls_R_factor_obs 0.162 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.160 _refine.ls_R_factor_R_free 0.205 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 783 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.958 _refine.correlation_coeff_Fo_to_Fc_free 0.933 _refine.B_iso_mean 10.48 _refine.aniso_B[1][1] 1.09000 _refine.aniso_B[2][2] -0.56000 _refine.aniso_B[3][3] -0.29000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.72000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. DISORDERED REGIONS WERE MODELED STEREOCHEMICALLY' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.130 _refine.pdbx_overall_ESU_R_Free 0.124 _refine.overall_SU_ML 0.076 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 2.388 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1367 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 40 _refine_hist.number_atoms_solvent 208 _refine_hist.number_atoms_total 1615 _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 18.29 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.013 0.021 ? 1446 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.485 1.978 ? 1947 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.402 5.000 ? 171 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.106 0.200 ? 214 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 1065 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.221 0.200 ? 751 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.170 0.200 ? 179 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.235 0.200 ? 61 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.195 0.200 ? 18 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.717 1.500 ? 851 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.368 2.000 ? 1363 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 2.204 3.000 ? 595 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 3.637 4.500 ? 584 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.80 _refine_ls_shell.d_res_low 1.85 _refine_ls_shell.number_reflns_R_work 1104 _refine_ls_shell.R_factor_R_work 0.1860 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.2660 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 58 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2BMD _struct.title 'high resolution structure of GDP-bound human Rab4a' _struct.pdbx_descriptor 'RAS-RELATED PROTEIN RAB4A (E.C.3.6.5.2)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2BMD _struct_keywords.pdbx_keywords 'PROTEIN TRANSPORT' _struct_keywords.text 'GTP-BINDING PROTEIN, VESICULAR TRANSPORT, ENDOCYTOSIS, PRENYLATION, PROTEIN TRANSPORT, TRANSPORT' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 22 ? LYS A 33 ? GLY A 22 LYS A 33 1 ? 12 HELX_P HELX_P2 2 THR A 76 ? ARG A 81 ? THR A 76 ARG A 81 1 ? 6 HELX_P HELX_P3 3 SER A 94 ? ALA A 100 ? SER A 94 ALA A 100 1 ? 7 HELX_P HELX_P4 4 ALA A 100 ? ALA A 112 ? ALA A 100 ALA A 112 1 ? 13 HELX_P HELX_P5 5 LEU A 127 ? ARG A 131 ? LEU A 127 ARG A 131 5 ? 5 HELX_P HELX_P6 6 THR A 134 ? ASN A 145 ? THR A 134 ASN A 145 1 ? 12 HELX_P HELX_P7 7 ASN A 159 ? SER A 177 ? ASN A 159 SER A 177 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id AA _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? parallel AA 3 4 ? parallel AA 4 5 ? parallel AA 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 GLU A 46 ? VAL A 54 ? GLU A 46 VAL A 54 AA 2 LYS A 57 ? ASP A 65 ? LYS A 57 ASP A 65 AA 3 PHE A 9 ? GLY A 17 ? PHE A 9 GLY A 17 AA 4 GLY A 85 ? ASP A 91 ? GLY A 85 ASP A 91 AA 5 VAL A 117 ? ASN A 123 ? VAL A 117 ASN A 123 AA 6 MET A 148 ? GLU A 151 ? MET A 148 GLU A 151 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N VAL A 54 ? N VAL A 54 O LYS A 57 ? O LYS A 57 AA 2 3 N LYS A 60 ? N LYS A 60 O PHE A 9 ? O PHE A 9 AA 3 4 N LEU A 14 ? N LEU A 14 O GLY A 85 ? O GLY A 85 AA 4 5 N ALA A 86 ? N ALA A 86 O VAL A 117 ? O VAL A 117 AA 5 6 N LEU A 120 ? N LEU A 120 O MET A 148 ? O MET A 148 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 25 'BINDING SITE FOR RESIDUE GDP A1187' AC2 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE GOL A1188' AC3 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE GOL A1189' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 25 GLY A 20 ? GLY A 20 . ? 1_555 ? 2 AC1 25 THR A 21 ? THR A 21 . ? 1_555 ? 3 AC1 25 GLY A 22 ? GLY A 22 . ? 1_555 ? 4 AC1 25 LYS A 23 ? LYS A 23 . ? 1_555 ? 5 AC1 25 SER A 24 ? SER A 24 . ? 1_555 ? 6 AC1 25 CYS A 25 ? CYS A 25 . ? 1_555 ? 7 AC1 25 PHE A 35 ? PHE A 35 . ? 1_555 ? 8 AC1 25 GLY A 55 ? GLY A 55 . ? 1_555 ? 9 AC1 25 LYS A 57 ? LYS A 57 . ? 1_555 ? 10 AC1 25 ALA A 67 ? ALA A 67 . ? 1_555 ? 11 AC1 25 MET A 110 ? MET A 110 . ? 1_555 ? 12 AC1 25 ASN A 123 ? ASN A 123 . ? 1_555 ? 13 AC1 25 LYS A 124 ? LYS A 124 . ? 1_555 ? 14 AC1 25 ASP A 126 ? ASP A 126 . ? 1_555 ? 15 AC1 25 LEU A 127 ? LEU A 127 . ? 1_555 ? 16 AC1 25 SER A 153 ? SER A 153 . ? 1_555 ? 17 AC1 25 ALA A 154 ? ALA A 154 . ? 1_555 ? 18 AC1 25 LEU A 155 ? LEU A 155 . ? 1_555 ? 19 AC1 25 HOH E . ? HOH A 2049 . ? 1_555 ? 20 AC1 25 HOH E . ? HOH A 2050 . ? 1_555 ? 21 AC1 25 HOH E . ? HOH A 2201 . ? 1_555 ? 22 AC1 25 HOH E . ? HOH A 2202 . ? 1_555 ? 23 AC1 25 HOH E . ? HOH A 2203 . ? 1_555 ? 24 AC1 25 HOH E . ? HOH A 2204 . ? 1_555 ? 25 AC1 25 HOH E . ? HOH A 2205 . ? 1_555 ? 26 AC2 8 GLU A 70 ? GLU A 70 . ? 1_555 ? 27 AC2 8 ARG A 71 ? ARG A 71 . ? 1_555 ? 28 AC2 8 PHE A 72 ? PHE A 72 . ? 1_555 ? 29 AC2 8 TRP A 104 ? TRP A 104 . ? 1_555 ? 30 AC2 8 ASP A 107 ? ASP A 107 . ? 1_555 ? 31 AC2 8 THR A 156 ? THR A 156 . ? 1_555 ? 32 AC2 8 HOH E . ? HOH A 2206 . ? 1_555 ? 33 AC2 8 HOH E . ? HOH A 2207 . ? 1_555 ? 34 AC3 7 TYR A 98 ? TYR A 98 . ? 1_555 ? 35 AC3 7 ASN A 99 ? ASN A 99 . ? 1_555 ? 36 AC3 7 LEU A 101 ? LEU A 101 . ? 1_555 ? 37 AC3 7 THR A 102 ? THR A 102 . ? 1_555 ? 38 AC3 7 PHE A 141 ? PHE A 141 . ? 1_555 ? 39 AC3 7 HOH E . ? HOH A 2146 . ? 1_555 ? 40 AC3 7 HOH E . ? HOH A 2208 . ? 1_555 ? # _database_PDB_matrix.entry_id 2BMD _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2BMD _atom_sites.fract_transf_matrix[1][1] 0.014057 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002485 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015686 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.026529 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 ? ? ? A . n A 1 2 HIS 2 2 ? ? ? A . n A 1 3 MET 3 3 ? ? ? A . n A 1 4 SER 4 4 ? ? ? A . n A 1 5 GLU 5 5 5 GLU GLU A . n A 1 6 THR 6 6 6 THR THR A . n A 1 7 TYR 7 7 7 TYR TYR A . n A 1 8 ASP 8 8 8 ASP ASP A . n A 1 9 PHE 9 9 9 PHE PHE A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 PHE 11 11 11 PHE PHE A . n A 1 12 LYS 12 12 12 LYS LYS A . n A 1 13 PHE 13 13 13 PHE PHE A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 ILE 16 16 16 ILE ILE A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 ASN 18 18 18 ASN ASN A . n A 1 19 ALA 19 19 19 ALA ALA A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 THR 21 21 21 THR THR A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 LYS 23 23 23 LYS LYS A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 CYS 25 25 25 CYS CYS A . n A 1 26 LEU 26 26 26 LEU LEU A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 HIS 28 28 28 HIS HIS A . n A 1 29 GLN 29 29 29 GLN GLN A . n A 1 30 PHE 30 30 30 PHE PHE A . n A 1 31 ILE 31 31 31 ILE ILE A . n A 1 32 GLU 32 32 32 GLU GLU A . n A 1 33 LYS 33 33 33 LYS LYS A . n A 1 34 LYS 34 34 34 LYS LYS A . n A 1 35 PHE 35 35 35 PHE PHE A . n A 1 36 LYS 36 36 36 LYS LYS A . n A 1 37 ASP 37 37 ? ? ? A . n A 1 38 ASP 38 38 ? ? ? A . n A 1 39 SER 39 39 ? ? ? A . n A 1 40 ASN 40 40 ? ? ? A . n A 1 41 HIS 41 41 ? ? ? A . n A 1 42 THR 42 42 ? ? ? A . n A 1 43 ILE 43 43 ? ? ? A . n A 1 44 GLY 44 44 ? ? ? A . n A 1 45 VAL 45 45 ? ? ? A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 PHE 47 47 47 PHE PHE A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 SER 49 49 49 SER SER A . n A 1 50 LYS 50 50 50 LYS LYS A . n A 1 51 ILE 51 51 51 ILE ILE A . n A 1 52 ILE 52 52 52 ILE ILE A . n A 1 53 ASN 53 53 53 ASN ASN A . n A 1 54 VAL 54 54 54 VAL VAL A . n A 1 55 GLY 55 55 55 GLY GLY A . n A 1 56 GLY 56 56 56 GLY GLY A . n A 1 57 LYS 57 57 57 LYS LYS A . n A 1 58 TYR 58 58 58 TYR TYR A . n A 1 59 VAL 59 59 59 VAL VAL A . n A 1 60 LYS 60 60 60 LYS LYS A . n A 1 61 LEU 61 61 61 LEU LEU A . n A 1 62 GLN 62 62 62 GLN GLN A . n A 1 63 ILE 63 63 63 ILE ILE A . n A 1 64 TRP 64 64 64 TRP TRP A . n A 1 65 ASP 65 65 65 ASP ASP A . n A 1 66 THR 66 66 66 THR THR A . n A 1 67 ALA 67 67 67 ALA ALA A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 GLN 69 69 69 GLN GLN A . n A 1 70 GLU 70 70 70 GLU GLU A . n A 1 71 ARG 71 71 71 ARG ARG A . n A 1 72 PHE 72 72 72 PHE PHE A . n A 1 73 ARG 73 73 73 ARG ARG A . n A 1 74 SER 74 74 74 SER SER A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 THR 76 76 76 THR THR A . n A 1 77 ARG 77 77 77 ARG ARG A . n A 1 78 SER 78 78 78 SER SER A . n A 1 79 TYR 79 79 79 TYR TYR A . n A 1 80 TYR 80 80 80 TYR TYR A . n A 1 81 ARG 81 81 81 ARG ARG A . n A 1 82 GLY 82 82 82 GLY GLY A . n A 1 83 ALA 83 83 83 ALA ALA A . n A 1 84 ALA 84 84 84 ALA ALA A . n A 1 85 GLY 85 85 85 GLY GLY A . n A 1 86 ALA 86 86 86 ALA ALA A . n A 1 87 LEU 87 87 87 LEU LEU A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 VAL 89 89 89 VAL VAL A . n A 1 90 TYR 90 90 90 TYR TYR A . n A 1 91 ASP 91 91 91 ASP ASP A . n A 1 92 ILE 92 92 92 ILE ILE A . n A 1 93 THR 93 93 93 THR THR A . n A 1 94 SER 94 94 94 SER SER A . n A 1 95 ARG 95 95 95 ARG ARG A . n A 1 96 GLU 96 96 96 GLU GLU A . n A 1 97 THR 97 97 97 THR THR A . n A 1 98 TYR 98 98 98 TYR TYR A . n A 1 99 ASN 99 99 99 ASN ASN A . n A 1 100 ALA 100 100 100 ALA ALA A . n A 1 101 LEU 101 101 101 LEU LEU A . n A 1 102 THR 102 102 102 THR THR A . n A 1 103 ASN 103 103 103 ASN ASN A . n A 1 104 TRP 104 104 104 TRP TRP A . n A 1 105 LEU 105 105 105 LEU LEU A . n A 1 106 THR 106 106 106 THR THR A . n A 1 107 ASP 107 107 107 ASP ASP A . n A 1 108 ALA 108 108 108 ALA ALA A . n A 1 109 ARG 109 109 109 ARG ARG A . n A 1 110 MET 110 110 110 MET MET A . n A 1 111 LEU 111 111 111 LEU LEU A . n A 1 112 ALA 112 112 112 ALA ALA A . n A 1 113 SER 113 113 113 SER SER A . n A 1 114 GLN 114 114 114 GLN GLN A . n A 1 115 ASN 115 115 115 ASN ASN A . n A 1 116 ILE 116 116 116 ILE ILE A . n A 1 117 VAL 117 117 117 VAL VAL A . n A 1 118 ILE 118 118 118 ILE ILE A . n A 1 119 ILE 119 119 119 ILE ILE A . n A 1 120 LEU 120 120 120 LEU LEU A . n A 1 121 CYS 121 121 121 CYS CYS A . n A 1 122 GLY 122 122 122 GLY GLY A . n A 1 123 ASN 123 123 123 ASN ASN A . n A 1 124 LYS 124 124 124 LYS LYS A . n A 1 125 LYS 125 125 125 LYS LYS A . n A 1 126 ASP 126 126 126 ASP ASP A . n A 1 127 LEU 127 127 127 LEU LEU A . n A 1 128 ASP 128 128 128 ASP ASP A . n A 1 129 ALA 129 129 129 ALA ALA A . n A 1 130 ASP 130 130 130 ASP ASP A . n A 1 131 ARG 131 131 131 ARG ARG A . n A 1 132 GLU 132 132 132 GLU GLU A . n A 1 133 VAL 133 133 133 VAL VAL A . n A 1 134 THR 134 134 134 THR THR A . n A 1 135 PHE 135 135 135 PHE PHE A . n A 1 136 LEU 136 136 136 LEU LEU A . n A 1 137 GLU 137 137 137 GLU GLU A . n A 1 138 ALA 138 138 138 ALA ALA A . n A 1 139 SER 139 139 139 SER SER A . n A 1 140 ARG 140 140 140 ARG ARG A . n A 1 141 PHE 141 141 141 PHE PHE A . n A 1 142 ALA 142 142 142 ALA ALA A . n A 1 143 GLN 143 143 143 GLN GLN A . n A 1 144 GLU 144 144 144 GLU GLU A . n A 1 145 ASN 145 145 145 ASN ASN A . n A 1 146 GLU 146 146 146 GLU GLU A . n A 1 147 LEU 147 147 147 LEU LEU A . n A 1 148 MET 148 148 148 MET MET A . n A 1 149 PHE 149 149 149 PHE PHE A . n A 1 150 LEU 150 150 150 LEU LEU A . n A 1 151 GLU 151 151 151 GLU GLU A . n A 1 152 THR 152 152 152 THR THR A . n A 1 153 SER 153 153 153 SER SER A . n A 1 154 ALA 154 154 154 ALA ALA A . n A 1 155 LEU 155 155 155 LEU LEU A . n A 1 156 THR 156 156 156 THR THR A . n A 1 157 GLY 157 157 157 GLY GLY A . n A 1 158 GLU 158 158 158 GLU GLU A . n A 1 159 ASN 159 159 159 ASN ASN A . n A 1 160 VAL 160 160 160 VAL VAL A . n A 1 161 GLU 161 161 161 GLU GLU A . n A 1 162 GLU 162 162 162 GLU GLU A . n A 1 163 ALA 163 163 163 ALA ALA A . n A 1 164 PHE 164 164 164 PHE PHE A . n A 1 165 VAL 165 165 165 VAL VAL A . n A 1 166 GLN 166 166 166 GLN GLN A . n A 1 167 CYS 167 167 167 CYS CYS A . n A 1 168 ALA 168 168 168 ALA ALA A . n A 1 169 ARG 169 169 169 ARG ARG A . n A 1 170 LYS 170 170 170 LYS LYS A . n A 1 171 ILE 171 171 171 ILE ILE A . n A 1 172 LEU 172 172 172 LEU LEU A . n A 1 173 ASN 173 173 173 ASN ASN A . n A 1 174 LYS 174 174 174 LYS LYS A . n A 1 175 ILE 175 175 175 ILE ILE A . n A 1 176 GLU 176 176 176 GLU GLU A . n A 1 177 SER 177 177 177 SER SER A . n A 1 178 GLY 178 178 178 GLY GLY A . n A 1 179 GLU 179 179 179 GLU GLU A . n A 1 180 LEU 180 180 180 LEU LEU A . n A 1 181 ASP 181 181 181 ASP ASP A . n A 1 182 PRO 182 182 182 PRO PRO A . n A 1 183 GLU 183 183 183 GLU GLU A . n A 1 184 ARG 184 184 184 ARG ARG A . n A 1 185 MET 185 185 185 MET MET A . n A 1 186 GLY 186 186 186 GLY GLY A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GDP 1 1187 1187 GDP GDP A . C 3 GOL 1 1188 1188 GOL GOL A . D 3 GOL 1 1189 1189 GOL GOL A . E 4 HOH 1 2001 2001 HOH HOH A . E 4 HOH 2 2002 2002 HOH HOH A . E 4 HOH 3 2003 2003 HOH HOH A . E 4 HOH 4 2004 2004 HOH HOH A . E 4 HOH 5 2005 2005 HOH HOH A . E 4 HOH 6 2006 2006 HOH HOH A . E 4 HOH 7 2007 2007 HOH HOH A . E 4 HOH 8 2008 2008 HOH HOH A . E 4 HOH 9 2009 2009 HOH HOH A . E 4 HOH 10 2010 2010 HOH HOH A . E 4 HOH 11 2011 2011 HOH HOH A . E 4 HOH 12 2012 2012 HOH HOH A . E 4 HOH 13 2013 2013 HOH HOH A . E 4 HOH 14 2014 2014 HOH HOH A . E 4 HOH 15 2015 2015 HOH HOH A . E 4 HOH 16 2016 2016 HOH HOH A . E 4 HOH 17 2017 2017 HOH HOH A . E 4 HOH 18 2018 2018 HOH HOH A . E 4 HOH 19 2019 2019 HOH HOH A . E 4 HOH 20 2020 2020 HOH HOH A . E 4 HOH 21 2021 2021 HOH HOH A . E 4 HOH 22 2022 2022 HOH HOH A . E 4 HOH 23 2023 2023 HOH HOH A . E 4 HOH 24 2024 2024 HOH HOH A . E 4 HOH 25 2025 2025 HOH HOH A . E 4 HOH 26 2026 2026 HOH HOH A . E 4 HOH 27 2027 2027 HOH HOH A . E 4 HOH 28 2028 2028 HOH HOH A . E 4 HOH 29 2029 2029 HOH HOH A . E 4 HOH 30 2030 2030 HOH HOH A . E 4 HOH 31 2031 2031 HOH HOH A . E 4 HOH 32 2032 2032 HOH HOH A . E 4 HOH 33 2033 2033 HOH HOH A . E 4 HOH 34 2034 2034 HOH HOH A . E 4 HOH 35 2035 2035 HOH HOH A . E 4 HOH 36 2036 2036 HOH HOH A . E 4 HOH 37 2037 2037 HOH HOH A . E 4 HOH 38 2038 2038 HOH HOH A . E 4 HOH 39 2039 2039 HOH HOH A . E 4 HOH 40 2040 2040 HOH HOH A . E 4 HOH 41 2041 2041 HOH HOH A . E 4 HOH 42 2042 2042 HOH HOH A . E 4 HOH 43 2043 2043 HOH HOH A . E 4 HOH 44 2044 2044 HOH HOH A . E 4 HOH 45 2045 2045 HOH HOH A . E 4 HOH 46 2046 2046 HOH HOH A . E 4 HOH 47 2047 2047 HOH HOH A . E 4 HOH 48 2048 2048 HOH HOH A . E 4 HOH 49 2049 2049 HOH HOH A . E 4 HOH 50 2050 2050 HOH HOH A . E 4 HOH 51 2051 2051 HOH HOH A . E 4 HOH 52 2052 2052 HOH HOH A . E 4 HOH 53 2053 2053 HOH HOH A . E 4 HOH 54 2054 2054 HOH HOH A . E 4 HOH 55 2055 2055 HOH HOH A . E 4 HOH 56 2056 2056 HOH HOH A . E 4 HOH 57 2057 2057 HOH HOH A . E 4 HOH 58 2058 2058 HOH HOH A . E 4 HOH 59 2059 2059 HOH HOH A . E 4 HOH 60 2060 2060 HOH HOH A . E 4 HOH 61 2061 2061 HOH HOH A . E 4 HOH 62 2062 2062 HOH HOH A . E 4 HOH 63 2063 2063 HOH HOH A . E 4 HOH 64 2064 2064 HOH HOH A . E 4 HOH 65 2065 2065 HOH HOH A . E 4 HOH 66 2066 2066 HOH HOH A . E 4 HOH 67 2067 2067 HOH HOH A . E 4 HOH 68 2068 2068 HOH HOH A . E 4 HOH 69 2069 2069 HOH HOH A . E 4 HOH 70 2070 2070 HOH HOH A . E 4 HOH 71 2071 2071 HOH HOH A . E 4 HOH 72 2072 2072 HOH HOH A . E 4 HOH 73 2073 2073 HOH HOH A . E 4 HOH 74 2074 2074 HOH HOH A . E 4 HOH 75 2075 2075 HOH HOH A . E 4 HOH 76 2076 2076 HOH HOH A . E 4 HOH 77 2077 2077 HOH HOH A . E 4 HOH 78 2078 2078 HOH HOH A . E 4 HOH 79 2079 2079 HOH HOH A . E 4 HOH 80 2080 2080 HOH HOH A . E 4 HOH 81 2081 2081 HOH HOH A . E 4 HOH 82 2082 2082 HOH HOH A . E 4 HOH 83 2083 2083 HOH HOH A . E 4 HOH 84 2084 2084 HOH HOH A . E 4 HOH 85 2085 2085 HOH HOH A . E 4 HOH 86 2086 2086 HOH HOH A . E 4 HOH 87 2087 2087 HOH HOH A . E 4 HOH 88 2088 2088 HOH HOH A . E 4 HOH 89 2089 2089 HOH HOH A . E 4 HOH 90 2090 2090 HOH HOH A . E 4 HOH 91 2091 2091 HOH HOH A . E 4 HOH 92 2092 2092 HOH HOH A . E 4 HOH 93 2093 2093 HOH HOH A . E 4 HOH 94 2094 2094 HOH HOH A . E 4 HOH 95 2095 2095 HOH HOH A . E 4 HOH 96 2096 2096 HOH HOH A . E 4 HOH 97 2097 2097 HOH HOH A . E 4 HOH 98 2098 2098 HOH HOH A . E 4 HOH 99 2099 2099 HOH HOH A . E 4 HOH 100 2100 2100 HOH HOH A . E 4 HOH 101 2101 2101 HOH HOH A . E 4 HOH 102 2102 2102 HOH HOH A . E 4 HOH 103 2103 2103 HOH HOH A . E 4 HOH 104 2104 2104 HOH HOH A . E 4 HOH 105 2105 2105 HOH HOH A . E 4 HOH 106 2106 2106 HOH HOH A . E 4 HOH 107 2107 2107 HOH HOH A . E 4 HOH 108 2108 2108 HOH HOH A . E 4 HOH 109 2109 2109 HOH HOH A . E 4 HOH 110 2110 2110 HOH HOH A . E 4 HOH 111 2111 2111 HOH HOH A . E 4 HOH 112 2112 2112 HOH HOH A . E 4 HOH 113 2113 2113 HOH HOH A . E 4 HOH 114 2114 2114 HOH HOH A . E 4 HOH 115 2115 2115 HOH HOH A . E 4 HOH 116 2116 2116 HOH HOH A . E 4 HOH 117 2117 2117 HOH HOH A . E 4 HOH 118 2118 2118 HOH HOH A . E 4 HOH 119 2119 2119 HOH HOH A . E 4 HOH 120 2120 2120 HOH HOH A . E 4 HOH 121 2121 2121 HOH HOH A . E 4 HOH 122 2122 2122 HOH HOH A . E 4 HOH 123 2123 2123 HOH HOH A . E 4 HOH 124 2124 2124 HOH HOH A . E 4 HOH 125 2125 2125 HOH HOH A . E 4 HOH 126 2126 2126 HOH HOH A . E 4 HOH 127 2127 2127 HOH HOH A . E 4 HOH 128 2128 2128 HOH HOH A . E 4 HOH 129 2129 2129 HOH HOH A . E 4 HOH 130 2130 2130 HOH HOH A . E 4 HOH 131 2131 2131 HOH HOH A . E 4 HOH 132 2132 2132 HOH HOH A . E 4 HOH 133 2133 2133 HOH HOH A . E 4 HOH 134 2134 2134 HOH HOH A . E 4 HOH 135 2135 2135 HOH HOH A . E 4 HOH 136 2136 2136 HOH HOH A . E 4 HOH 137 2137 2137 HOH HOH A . E 4 HOH 138 2138 2138 HOH HOH A . E 4 HOH 139 2139 2139 HOH HOH A . E 4 HOH 140 2140 2140 HOH HOH A . E 4 HOH 141 2141 2141 HOH HOH A . E 4 HOH 142 2142 2142 HOH HOH A . E 4 HOH 143 2143 2143 HOH HOH A . E 4 HOH 144 2144 2144 HOH HOH A . E 4 HOH 145 2145 2145 HOH HOH A . E 4 HOH 146 2146 2146 HOH HOH A . E 4 HOH 147 2147 2147 HOH HOH A . E 4 HOH 148 2148 2148 HOH HOH A . E 4 HOH 149 2149 2149 HOH HOH A . E 4 HOH 150 2150 2150 HOH HOH A . E 4 HOH 151 2151 2151 HOH HOH A . E 4 HOH 152 2152 2152 HOH HOH A . E 4 HOH 153 2153 2153 HOH HOH A . E 4 HOH 154 2154 2154 HOH HOH A . E 4 HOH 155 2155 2155 HOH HOH A . E 4 HOH 156 2156 2156 HOH HOH A . E 4 HOH 157 2157 2157 HOH HOH A . E 4 HOH 158 2158 2158 HOH HOH A . E 4 HOH 159 2159 2159 HOH HOH A . E 4 HOH 160 2160 2160 HOH HOH A . E 4 HOH 161 2161 2161 HOH HOH A . E 4 HOH 162 2162 2162 HOH HOH A . E 4 HOH 163 2163 2163 HOH HOH A . E 4 HOH 164 2164 2164 HOH HOH A . E 4 HOH 165 2165 2165 HOH HOH A . E 4 HOH 166 2166 2166 HOH HOH A . E 4 HOH 167 2167 2167 HOH HOH A . E 4 HOH 168 2168 2168 HOH HOH A . E 4 HOH 169 2169 2169 HOH HOH A . E 4 HOH 170 2170 2170 HOH HOH A . E 4 HOH 171 2171 2171 HOH HOH A . E 4 HOH 172 2172 2172 HOH HOH A . E 4 HOH 173 2173 2173 HOH HOH A . E 4 HOH 174 2174 2174 HOH HOH A . E 4 HOH 175 2175 2175 HOH HOH A . E 4 HOH 176 2176 2176 HOH HOH A . E 4 HOH 177 2177 2177 HOH HOH A . E 4 HOH 178 2178 2178 HOH HOH A . E 4 HOH 179 2179 2179 HOH HOH A . E 4 HOH 180 2180 2180 HOH HOH A . E 4 HOH 181 2181 2181 HOH HOH A . E 4 HOH 182 2182 2182 HOH HOH A . E 4 HOH 183 2183 2183 HOH HOH A . E 4 HOH 184 2184 2184 HOH HOH A . E 4 HOH 185 2185 2185 HOH HOH A . E 4 HOH 186 2186 2186 HOH HOH A . E 4 HOH 187 2187 2187 HOH HOH A . E 4 HOH 188 2188 2188 HOH HOH A . E 4 HOH 189 2189 2189 HOH HOH A . E 4 HOH 190 2190 2190 HOH HOH A . E 4 HOH 191 2191 2191 HOH HOH A . E 4 HOH 192 2192 2192 HOH HOH A . E 4 HOH 193 2193 2193 HOH HOH A . E 4 HOH 194 2194 2194 HOH HOH A . E 4 HOH 195 2195 2195 HOH HOH A . E 4 HOH 196 2196 2196 HOH HOH A . E 4 HOH 197 2197 2197 HOH HOH A . E 4 HOH 198 2198 2198 HOH HOH A . E 4 HOH 199 2199 2199 HOH HOH A . E 4 HOH 200 2200 2200 HOH HOH A . E 4 HOH 201 2201 2201 HOH HOH A . E 4 HOH 202 2202 2202 HOH HOH A . E 4 HOH 203 2203 2203 HOH HOH A . E 4 HOH 204 2204 2204 HOH HOH A . E 4 HOH 205 2205 2205 HOH HOH A . E 4 HOH 206 2206 2206 HOH HOH A . E 4 HOH 207 2207 2207 HOH HOH A . E 4 HOH 208 2208 2208 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-04-25 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2019-05-08 5 'Structure model' 1 4 2019-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Experimental preparation' 5 4 'Structure model' Other 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Experimental preparation' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_PDB_rev 2 4 'Structure model' database_PDB_rev_record 3 4 'Structure model' exptl_crystal_grow 4 4 'Structure model' pdbx_database_proc 5 4 'Structure model' pdbx_database_status 6 5 'Structure model' exptl_crystal_grow # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_exptl_crystal_grow.method' 2 4 'Structure model' '_pdbx_database_status.recvd_author_approval' 3 5 'Structure model' '_exptl_crystal_grow.temp' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 16.0847 _pdbx_refine_tls.origin_y 0.8627 _pdbx_refine_tls.origin_z 10.4003 _pdbx_refine_tls.T[1][1] 0.0104 _pdbx_refine_tls.T[2][2] 0.0072 _pdbx_refine_tls.T[3][3] 0.0010 _pdbx_refine_tls.T[1][2] 0.0069 _pdbx_refine_tls.T[1][3] -0.0029 _pdbx_refine_tls.T[2][3] -0.0012 _pdbx_refine_tls.L[1][1] 2.0117 _pdbx_refine_tls.L[2][2] 1.5674 _pdbx_refine_tls.L[3][3] 1.7407 _pdbx_refine_tls.L[1][2] 0.6100 _pdbx_refine_tls.L[1][3] -0.5630 _pdbx_refine_tls.L[2][3] 0.0144 _pdbx_refine_tls.S[1][1] -0.0405 _pdbx_refine_tls.S[1][2] 0.1609 _pdbx_refine_tls.S[1][3] 0.0171 _pdbx_refine_tls.S[2][1] -0.1605 _pdbx_refine_tls.S[2][2] 0.0741 _pdbx_refine_tls.S[2][3] -0.1219 _pdbx_refine_tls.S[3][1] -0.0467 _pdbx_refine_tls.S[3][2] 0.0904 _pdbx_refine_tls.S[3][3] -0.0336 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 5 _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 186 _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.1.19 ? 1 XDS 'data reduction' . ? 2 XSCALE 'data scaling' . ? 3 MOLREP phasing . ? 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 2089 ? ? O A HOH 2195 ? ? 2.11 2 1 OG1 A THR 102 ? A O A HOH 2105 ? ? 2.14 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 6 ? ? -72.39 38.00 2 1 ARG A 71 ? ? -105.74 50.70 3 1 PHE A 72 ? ? 128.97 -26.09 4 1 ALA A 112 ? ? -96.48 -83.63 5 1 LYS A 124 ? ? 71.63 35.74 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 ARG _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 71 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 PHE _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 72 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 131.77 # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 2011 ? 6.93 . 2 1 O ? A HOH 2023 ? 6.83 . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 5 ? CG ? A GLU 5 CG 2 1 Y 1 A GLU 5 ? CD ? A GLU 5 CD 3 1 Y 1 A GLU 5 ? OE1 ? A GLU 5 OE1 4 1 Y 1 A GLU 5 ? OE2 ? A GLU 5 OE2 5 1 Y 1 A LYS 36 ? O ? A LYS 36 O 6 1 Y 1 A LYS 36 ? CB ? A LYS 36 CB 7 1 Y 1 A LYS 36 ? CG ? A LYS 36 CG 8 1 Y 1 A LYS 36 ? CD ? A LYS 36 CD 9 1 Y 1 A LYS 36 ? CE ? A LYS 36 CE 10 1 Y 1 A LYS 36 ? NZ ? A LYS 36 NZ 11 1 Y 1 A GLU 46 ? CD ? A GLU 46 CD 12 1 Y 1 A GLU 46 ? OE1 ? A GLU 46 OE1 13 1 Y 1 A GLU 46 ? OE2 ? A GLU 46 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 1 ? A GLY 1 2 1 Y 1 A HIS 2 ? A HIS 2 3 1 Y 1 A MET 3 ? A MET 3 4 1 Y 1 A SER 4 ? A SER 4 5 1 Y 1 A ASP 37 ? A ASP 37 6 1 Y 1 A ASP 38 ? A ASP 38 7 1 Y 1 A SER 39 ? A SER 39 8 1 Y 1 A ASN 40 ? A ASN 40 9 1 Y 1 A HIS 41 ? A HIS 41 10 1 Y 1 A THR 42 ? A THR 42 11 1 Y 1 A ILE 43 ? A ILE 43 12 1 Y 1 A GLY 44 ? A GLY 44 13 1 Y 1 A VAL 45 ? A VAL 45 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "GUANOSINE-5'-DIPHOSPHATE" GDP 3 GLYCEROL GOL 4 water HOH #