HEADER OXIDOREDUCTASE 15-MAR-05 2BMO TITLE THE CRYSTAL STRUCTURE OF NITROBENZENE DIOXYGENASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: OXYGENASE-ALPHA NBDO; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NITROBENZENE DIOXYGENASE; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: OXYGENASE-BETA NBDO; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: NITROBENZENE DIOXYGENASE; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COMAMONAS SP.; SOURCE 3 ORGANISM_TAXID: 58226; SOURCE 4 STRAIN: JS765; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI DH5[ALPHA]; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 668369; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PUC18; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PDTG927; SOURCE 9 OTHER_DETAILS: WASTE TREATMENT PLANT IN NEW JERSEY. (SF NISHINO AND SOURCE 10 JC SPAIN. 1995. APPL. ENVIRON. MICROBIOL.; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: COMAMONAS SP.; SOURCE 13 ORGANISM_TAXID: 58226; SOURCE 14 STRAIN: JS765; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI DH5[ALPHA]; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 668369; SOURCE 17 EXPRESSION_SYSTEM_VECTOR: PUC18; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PDTG927; SOURCE 19 OTHER_DETAILS: WASTE TREATMENT PLANT IN NEW JERSEY. (SF NISHINO AND SOURCE 20 JC SPAIN. 1995. APPL. ENVIRON. MICROBIOL. 61\:2308-2313) KEYWDS NITROBENZENE DIOXYGENASE, NITROARENE, RIESKE NON-HEME DIOXYGENASE, KEYWDS 2 SUBSTRATE SPECIFICITY IRON-SULFUR, METAL-BINDING, NAD, KEYWDS 3 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR R.FRIEMANN,M.M.IVKOVIC-JENSEN,D.J.LESSNER,C.YU,D.T.GIBSON, AUTHOR 2 R.E.PARALES,H.EKLUND,S.RAMASWAMY REVDAT 4 13-DEC-23 2BMO 1 REMARK LINK REVDAT 3 28-FEB-18 2BMO 1 SOURCE JRNL REMARK REVDAT 2 24-FEB-09 2BMO 1 VERSN REVDAT 1 04-MAY-05 2BMO 0 JRNL AUTH R.FRIEMANN,M.M.IVKOVIC-JENSEN,D.J.LESSNER,C.L.YU,D.T.GIBSON, JRNL AUTH 2 R.E.PARALES,H.EKLUND,S.RAMASWAMY JRNL TITL STRUCTURAL INSIGHT INTO THE DIOXYGENATION OF NITROARENE JRNL TITL 2 COMPOUNDS: THE CRYSTAL STRUCTURE OF NITROBENZENE JRNL TITL 3 DIOXYGENASE. JRNL REF J. MOL. BIOL. V. 348 1139 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 15854650 JRNL DOI 10.1016/J.JMB.2005.03.052 REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 198985 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.172 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 10509 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 14172 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2100 REMARK 3 BIN FREE R VALUE SET COUNT : 754 REMARK 3 BIN FREE R VALUE : 0.2250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5049 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 75 REMARK 3 SOLVENT ATOMS : 734 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.37000 REMARK 3 B22 (A**2) : -0.37000 REMARK 3 B33 (A**2) : 0.56000 REMARK 3 B12 (A**2) : -0.19000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.040 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.037 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.022 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.058 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.970 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5531 ; 0.007 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7522 ; 1.270 ; 1.931 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 721 ; 6.338 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 264 ;34.618 ;23.598 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 852 ;11.322 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;14.192 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 771 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4420 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2669 ; 0.207 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3823 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 576 ; 0.100 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 161 ; 0.216 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 65 ; 0.090 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3491 ; 0.826 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5507 ; 1.266 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2331 ; 1.910 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2012 ; 2.318 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2BMO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-MAR-05. REMARK 100 THE DEPOSITION ID IS D_1290023349. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-SEP-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99989 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 207117 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 52.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.61000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1O7W REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES PH 6.0, 6% PEG 8000 (W/V), REMARK 280 5MM NICL2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 42.17800 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 42.17800 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 42.17800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 60.79300 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 105.29656 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 121.58600 REMARK 350 BIOMT2 3 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B2263 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2303 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLU A 440 REMARK 465 HIS A 441 REMARK 465 THR A 442 REMARK 465 LYS A 443 REMARK 465 THR A 444 REMARK 465 THR A 445 REMARK 465 ASP A 446 REMARK 465 ARG A 447 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 167 CG CD OE1 OE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 4 CB CG CD OE1 REMARK 480 ASN A 5 CB CG OD1 ND2 REMARK 480 GLU A 9 CB CG CD OE1 OE2 REMARK 480 ALA A 10 CB REMARK 480 THR A 13 CG2 REMARK 480 LEU A 17 CD1 CD2 REMARK 480 LYS A 22 CE NZ REMARK 480 GLU A 23 CD OE1 OE2 REMARK 480 LYS A 30 CG CE NZ REMARK 480 LYS A 95 CG CD CE NZ REMARK 480 LYS A 119 CD CE NZ REMARK 480 ASP A 124 CB CG OD1 OD2 REMARK 480 LYS A 127 CD CE NZ REMARK 480 LYS A 129 CG CD CE NZ REMARK 480 GLU A 153 CG REMARK 480 LYS A 230 CD CE NZ REMARK 480 LEU A 238 CD1 CD2 REMARK 480 GLU A 276 CD OE1 OE2 REMARK 480 LYS A 277 CG CD CE NZ REMARK 480 GLU A 281 CG CD OE1 OE2 REMARK 480 ASN A 320 CG OD1 ND2 REMARK 480 LYS A 332 CD CE NZ REMARK 480 GLN A 369 CG CD OE1 REMARK 480 LYS A 372 CG CD CE NZ REMARK 480 LYS A 389 CG CD CE NZ REMARK 480 GLU A 395 CG CD OE1 OE2 REMARK 480 CYS A 396 SG REMARK 480 LYS A 403 CD CE NZ REMARK 480 ASN A 432 ND2 REMARK 480 ILE A 439 CG1 CD1 REMARK 480 LYS B 9 CE NZ REMARK 480 GLN B 32 CG CD OE1 NE2 REMARK 480 LYS B 51 CD CE NZ REMARK 480 ARG B 77 CA CB CG CD NE CZ NH1 REMARK 480 ARG B 77 NH2 REMARK 480 ARG B 78 CG CD NH1 REMARK 480 GLN B 80 OE1 NE2 REMARK 480 LYS B 96 NZ REMARK 480 LYS B 127 CE NZ REMARK 480 LYS B 129 CD CE REMARK 480 GLU B 133 CD OE1 OE2 REMARK 480 GLU B 167 CB REMARK 480 LEU B 190 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU B 76 N ARG B 77 1.74 REMARK 500 OD2 ASP A 318 OD1 ASN A 320 2.03 REMARK 500 OE2 GLU B 18 O HOH B 2056 2.13 REMARK 500 OD1 ASN A 93 CD ARG B 78 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 30 CB LYS A 30 CG 0.783 REMARK 500 LYS A 30 CG LYS A 30 CD 1.788 REMARK 500 LYS A 30 CG LYS A 30 CD 1.732 REMARK 500 LYS A 95 CB LYS A 95 CG -0.231 REMARK 500 LYS A 95 CG LYS A 95 CD 2.202 REMARK 500 LYS A 95 CG LYS A 95 CD 1.276 REMARK 500 LYS A 277 CD LYS A 277 CE 0.942 REMARK 500 LYS A 277 CD LYS A 277 CE 3.085 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 30 CA - CB - CG ANGL. DEV. = -15.9 DEGREES REMARK 500 LYS A 30 CB - CG - CD ANGL. DEV. = -62.3 DEGREES REMARK 500 LYS A 30 CB - CG - CD ANGL. DEV. = -62.8 DEGREES REMARK 500 LYS A 30 CG - CD - CE ANGL. DEV. = -39.3 DEGREES REMARK 500 LYS A 30 CG - CD - CE ANGL. DEV. = 37.2 DEGREES REMARK 500 LYS A 95 CB - CG - CD ANGL. DEV. = -95.3 DEGREES REMARK 500 LYS A 95 CB - CG - CD ANGL. DEV. = -48.0 DEGREES REMARK 500 LYS A 95 CG - CD - CE ANGL. DEV. = 29.1 DEGREES REMARK 500 LYS A 95 CG - CD - CE ANGL. DEV. = 59.3 DEGREES REMARK 500 LYS A 277 CG - CD - CE ANGL. DEV. = -43.4 DEGREES REMARK 500 LYS A 277 CD - CE - NZ ANGL. DEV. = -18.8 DEGREES REMARK 500 GLU B 76 CA - C - N ANGL. DEV. = 30.3 DEGREES REMARK 500 GLU B 76 O - C - N ANGL. DEV. = -35.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 31 -76.13 -122.23 REMARK 500 LEU A 40 -63.95 -106.99 REMARK 500 HIS A 81 -75.08 -85.65 REMARK 500 TRP A 209 -62.67 -101.88 REMARK 500 LYS A 403 46.05 -94.11 REMARK 500 ARG B 77 -39.71 -147.20 REMARK 500 ARG B 77 -39.71 -157.07 REMARK 500 ASN B 82 123.76 -39.32 REMARK 500 ASN B 89 76.67 -155.79 REMARK 500 GLU B 149 -51.20 78.92 REMARK 500 HIS B 188 -40.32 72.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLU B 76 -23.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2031 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A2045 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH B2010 DISTANCE = 5.88 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A1440 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 79 SG REMARK 620 2 FES A1440 S1 109.7 REMARK 620 3 FES A1440 S2 110.4 105.0 REMARK 620 4 CYS A 99 SG 108.0 115.7 107.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A1440 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 81 ND1 REMARK 620 2 FES A1440 S1 116.3 REMARK 620 3 FES A1440 S2 115.6 104.4 REMARK 620 4 HIS A 102 ND1 88.7 117.4 114.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A1441 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 206 NE2 REMARK 620 2 HIS A 211 NE2 97.0 REMARK 620 3 ASP A 360 OD1 89.5 92.6 REMARK 620 4 ASP A 360 OD2 142.7 88.7 53.4 REMARK 620 5 EDO A1442 O1 91.8 167.6 96.3 89.6 REMARK 620 6 HOH A2423 O 99.7 91.6 169.4 117.0 78.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B1195 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 14 NE2 REMARK 620 2 GLU B 160 OE1 175.3 REMARK 620 3 HOH B2055 O 91.9 83.8 REMARK 620 4 HOH B2056 O 94.6 89.5 171.1 REMARK 620 5 HOH B2269 O 88.0 89.3 78.2 96.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B1196 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 56 NE2 REMARK 620 2 EDO B1197 O2 168.8 REMARK 620 3 EDO B1197 O1 85.5 83.3 REMARK 620 4 EDO B1197 O1 21.3 160.8 95.1 REMARK 620 5 EDO B1197 O2 23.0 160.5 97.9 2.8 REMARK 620 6 HOH B2003 O 90.6 89.1 89.4 71.7 71.5 REMARK 620 7 HOH B2015 O 96.9 94.2 173.1 85.1 82.3 84.2 REMARK 620 8 HOH B2140 O 92.0 89.0 93.7 110.3 110.3 176.1 92.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A1441 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B1195 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B1196 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FES A1440 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1442 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1443 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1444 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B1197 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B1198 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B1199 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B1200 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH A1445 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH A1446 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH A1447 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH A1448 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH A1449 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH B1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH B1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH B1204 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH B1205 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH B1206 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH B1207 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH B1208 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BMQ RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF NITROBENZENE DIOXYGENASE IN COMPLEX WITH REMARK 900 NITROBENZENE REMARK 900 RELATED ID: 2BMR RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF NITROBENZENE DIOXYGENASE IN COMPLEX WITH 3- REMARK 900 NITROTOLUENE DBREF 2BMO A 1 447 UNP Q8RTL4 Q8RTL4_9BURK 1 447 DBREF 2BMO B 1 194 UNP Q8RTL3 Q8RTL3_9BURK 1 194 SEQRES 1 A 447 MET SER TYR GLN ASN LEU VAL SER GLU ALA GLY LEU THR SEQRES 2 A 447 GLN LYS LEU LEU ILE HIS GLY ASP LYS GLU LEU PHE GLN SEQRES 3 A 447 HIS GLU LEU LYS THR ILE PHE ALA ARG ASN TRP LEU PHE SEQRES 4 A 447 LEU THR HIS ASP SER LEU ILE PRO SER PRO GLY ASP TYR SEQRES 5 A 447 VAL LYS ALA LYS MET GLY VAL ASP GLU VAL ILE VAL SER SEQRES 6 A 447 ARG GLN ASN ASP GLY SER VAL ARG ALA PHE LEU ASN VAL SEQRES 7 A 447 CYS ARG HIS ARG GLY LYS THR LEU VAL HIS ALA GLU ALA SEQRES 8 A 447 GLY ASN ALA LYS GLY PHE VAL CYS GLY TYR HIS GLY TRP SEQRES 9 A 447 GLY TYR GLY SER ASN GLY GLU LEU GLN SER VAL PRO PHE SEQRES 10 A 447 GLU LYS GLU LEU TYR GLY ASP ALA ILE LYS LYS LYS CYS SEQRES 11 A 447 LEU GLY LEU LYS GLU VAL PRO ARG ILE GLU SER PHE HIS SEQRES 12 A 447 GLY PHE ILE TYR GLY CYS PHE ASP ALA GLU ALA PRO PRO SEQRES 13 A 447 LEU ILE ASP TYR LEU GLY ASP ALA ALA TRP TYR LEU GLU SEQRES 14 A 447 PRO THR PHE LYS TYR SER GLY GLY LEU GLU LEU VAL GLY SEQRES 15 A 447 PRO PRO GLY LYS VAL VAL VAL LYS ALA ASN TRP LYS SER SEQRES 16 A 447 PHE ALA GLU ASN PHE VAL GLY ASP GLY TYR HIS VAL GLY SEQRES 17 A 447 TRP THR HIS ALA ALA ALA LEU ARG ALA GLY GLN SER VAL SEQRES 18 A 447 PHE SER SER ILE ALA GLY ASN ALA LYS LEU PRO PRO GLU SEQRES 19 A 447 GLY ALA GLY LEU GLN MET THR SER LYS TYR GLY SER GLY SEQRES 20 A 447 MET GLY VAL PHE TRP GLY TYR TYR SER GLY ASN PHE SER SEQRES 21 A 447 ALA ASP MET ILE PRO ASP LEU MET ALA PHE GLY ALA ALA SEQRES 22 A 447 LYS GLN GLU LYS LEU ALA LYS GLU ILE GLY ASP VAL ARG SEQRES 23 A 447 ALA ARG ILE TYR ARG SER PHE LEU ASN GLY THR ILE PHE SEQRES 24 A 447 PRO ASN ASN SER PHE LEU THR GLY SER ALA ALA PHE ARG SEQRES 25 A 447 VAL TRP ASN PRO ILE ASP GLU ASN THR THR GLU VAL TRP SEQRES 26 A 447 THR TYR ALA PHE VAL GLU LYS ASP MET PRO GLU ASP LEU SEQRES 27 A 447 LYS ARG ARG VAL ALA ASP ALA VAL GLN ARG SER ILE GLY SEQRES 28 A 447 PRO ALA GLY PHE TRP GLU SER ASP ASP ASN GLU ASN MET SEQRES 29 A 447 GLU THR MET SER GLN ASN GLY LYS LYS TYR GLN SER SER SEQRES 30 A 447 ASN ILE ASP GLN ILE ALA SER LEU GLY PHE GLY LYS ASP SEQRES 31 A 447 VAL TYR GLY ASP GLU CYS TYR PRO GLY VAL VAL GLY LYS SEQRES 32 A 447 SER ALA ILE GLY GLU THR SER TYR ARG GLY PHE TYR ARG SEQRES 33 A 447 ALA TYR GLN ALA HIS ILE SER SER SER ASN TRP ALA GLU SEQRES 34 A 447 PHE GLU ASN ALA SER ARG ASN TRP HIS ILE GLU HIS THR SEQRES 35 A 447 LYS THR THR ASP ARG SEQRES 1 B 194 MET MET ILE ASN THR GLN GLU ASP LYS LEU VAL SER ALA SEQRES 2 B 194 HIS ASP ALA GLU GLU PHE HIS ARG PHE PHE VAL GLY HIS SEQRES 3 B 194 ASP SER ASP LEU GLN GLN GLU VAL THR THR LEU LEU THR SEQRES 4 B 194 ARG GLU ALA HIS LEU LEU ASP ILE GLN ALA TYR LYS ALA SEQRES 5 B 194 TRP LEU GLU HIS PHE VAL ALA PRO GLU ILE LYS TYR GLN SEQRES 6 B 194 VAL ILE SER ARG GLU LEU ARG SER THR SER GLU ARG ARG SEQRES 7 B 194 TYR GLN LEU ASN ASP ALA VAL ASN LEU TYR ASN GLU ASN SEQRES 8 B 194 TYR GLN GLN LEU LYS VAL ARG VAL GLU HIS GLN MET ASP SEQRES 9 B 194 PRO GLN ASN TRP ALA ASN ASN PRO LYS ILE ARG PHE THR SEQRES 10 B 194 ARG PHE VAL THR ASN VAL THR ALA ALA LYS ASP LYS SER SEQRES 11 B 194 ALA PRO GLU ILE LEU HIS VAL ARG SER ASN LEU ILE LEU SEQRES 12 B 194 HIS ARG ALA ARG ARG GLU ASN GLN VAL ASP VAL PHE TYR SEQRES 13 B 194 ALA THR ARG GLU ASP LYS TRP LYS ARG ILE GLU GLY GLY SEQRES 14 B 194 GLY ILE LYS LEU VAL GLU ARG PHE VAL ASP TYR PRO GLU SEQRES 15 B 194 ARG ILE PRO GLN THR HIS ASN LEU LEU VAL PHE LEU HET FES A1440 4 HET FE A1441 1 HET EDO A1442 4 HET EDO A1443 4 HET EDO A1444 4 HET EOH A1445 3 HET EOH A1446 3 HET EOH A1447 3 HET EOH A1448 3 HET EOH A1449 3 HET NI B1195 1 HET NI B1196 1 HET EDO B1197 4 HET EDO B1198 4 HET EDO B1199 4 HET EDO B1200 4 HET EDO B1201 4 HET EOH B1202 3 HET EOH B1203 3 HET EOH B1204 3 HET EOH B1205 3 HET EOH B1206 3 HET EOH B1207 3 HET EOH B1208 3 HETNAM FES FE2/S2 (INORGANIC) CLUSTER HETNAM FE FE (III) ION HETNAM EDO 1,2-ETHANEDIOL HETNAM EOH ETHANOL HETNAM NI NICKEL (II) ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 FES FE2 S2 FORMUL 4 FE FE 3+ FORMUL 5 EDO 8(C2 H6 O2) FORMUL 8 EOH 12(C2 H6 O) FORMUL 13 NI 2(NI 2+) FORMUL 27 HOH *734(H2 O) HELIX 1 1 SER A 8 GLY A 11 5 4 HELIX 2 2 LEU A 17 GLY A 20 5 4 HELIX 3 3 ASP A 21 ILE A 32 1 12 HELIX 4 4 SER A 44 ILE A 46 5 3 HELIX 5 5 PHE A 117 TYR A 122 1 6 HELIX 6 6 GLY A 123 ILE A 126 5 4 HELIX 7 7 LYS A 127 LEU A 131 5 5 HELIX 8 8 PRO A 156 GLY A 162 1 7 HELIX 9 9 ASP A 163 LYS A 173 1 11 HELIX 10 10 ASN A 192 ASP A 203 1 12 HELIX 11 11 HIS A 206 HIS A 211 1 6 HELIX 12 12 HIS A 211 GLN A 219 1 9 HELIX 13 13 SER A 220 ALA A 229 5 10 HELIX 14 14 SER A 260 ASP A 262 5 3 HELIX 15 15 MET A 263 GLY A 283 1 21 HELIX 16 16 GLY A 283 ARG A 291 1 9 HELIX 17 17 PRO A 335 GLY A 351 1 17 HELIX 18 18 GLY A 354 GLY A 371 1 18 HELIX 19 19 GLN A 375 ASN A 378 5 4 HELIX 20 20 GLU A 408 SER A 423 1 16 HELIX 21 21 ASN A 426 SER A 434 1 9 HELIX 22 22 SER B 12 GLY B 25 1 14 HELIX 23 23 ASP B 27 ILE B 47 1 21 HELIX 24 24 ALA B 49 PHE B 57 1 9 HELIX 25 25 ASN B 91 ASP B 104 1 14 HELIX 26 26 ASN B 107 ASN B 111 5 5 SHEET 1 AA 2 THR A 13 LYS A 15 0 SHEET 2 AA 2 ASP A 380 ILE A 382 -1 O GLN A 381 N GLN A 14 SHEET 1 AB 3 LEU A 38 HIS A 42 0 SHEET 2 AB 3 PHE A 145 CYS A 149 -1 O ILE A 146 N LEU A 40 SHEET 3 AB 3 ARG A 138 PHE A 142 -1 O ARG A 138 N CYS A 149 SHEET 1 AC 4 VAL A 72 LEU A 76 0 SHEET 2 AC 4 ASP A 60 ARG A 66 -1 O ILE A 63 N PHE A 75 SHEET 3 AC 4 ASP A 51 MET A 57 -1 O ASP A 51 N ARG A 66 SHEET 4 AC 4 ALA A 91 ASN A 93 -1 O GLY A 92 N TYR A 52 SHEET 1 AD 3 GLY A 96 VAL A 98 0 SHEET 2 AD 3 GLY A 105 GLY A 107 -1 O TYR A 106 N PHE A 97 SHEET 3 AD 3 LEU A 112 SER A 114 -1 N GLN A 113 O GLY A 105 SHEET 1 AE 9 LEU A 178 VAL A 189 0 SHEET 2 AE 9 THR A 321 GLU A 331 -1 O THR A 322 N VAL A 189 SHEET 3 AE 9 ALA A 310 ASP A 318 -1 O PHE A 311 N TYR A 327 SHEET 4 AE 9 ASN A 302 LEU A 305 -1 O SER A 303 N ARG A 312 SHEET 5 AE 9 PHE A 293 ILE A 298 -1 O GLY A 296 N PHE A 304 SHEET 6 AE 9 GLY A 247 PHE A 251 -1 O GLY A 247 N THR A 297 SHEET 7 AE 9 LEU A 238 THR A 241 -1 O LEU A 238 N VAL A 250 SHEET 8 AE 9 VAL A 400 GLY A 402 -1 O VAL A 400 N THR A 241 SHEET 9 AE 9 VAL A 391 TYR A 392 -1 O VAL A 391 N VAL A 401 SHEET 1 BA 6 ALA B 84 GLU B 90 0 SHEET 2 BA 6 VAL B 58 ARG B 69 -1 O TYR B 64 N GLU B 90 SHEET 3 BA 6 ILE B 171 ASP B 179 1 O LEU B 173 N ALA B 59 SHEET 4 BA 6 GLN B 151 ARG B 165 -1 O GLU B 160 N PHE B 177 SHEET 5 BA 6 ILE B 134 ARG B 147 -1 O LEU B 135 N TRP B 163 SHEET 6 BA 6 ARG B 115 LYS B 127 -1 O ARG B 115 N ALA B 146 LINK SG CYS A 79 FE1 FES A1440 1555 1555 2.35 LINK ND1 HIS A 81 FE2 FES A1440 1555 1555 2.15 LINK SG CYS A 99 FE1 FES A1440 1555 1555 2.30 LINK ND1 HIS A 102 FE2 FES A1440 1555 1555 2.13 LINK NE2 HIS A 206 FE FE A1441 1555 1555 2.05 LINK NE2 HIS A 211 FE FE A1441 1555 1555 2.09 LINK OD1 ASP A 360 FE FE A1441 1555 1555 1.95 LINK OD2 ASP A 360 FE FE A1441 1555 1555 2.66 LINK FE FE A1441 O1 EDO A1442 1555 1555 2.34 LINK FE FE A1441 O HOH A2423 1555 1555 2.08 LINK NE2 HIS B 14 NI NI B1195 1555 1555 2.04 LINK NE2 HIS B 56 NI NI B1196 1555 1555 2.12 LINK OE1 GLU B 160 NI NI B1195 1555 1555 1.97 LINK NI NI B1195 O HOH B2055 1555 1555 2.19 LINK NI NI B1195 O HOH B2056 1555 1555 1.98 LINK NI NI B1195 O HOH B2269 1555 1555 1.99 LINK NI NI B1196 O2 EDO B1197 1555 3665 2.04 LINK NI NI B1196 O1 EDO B1197 1555 3665 2.05 LINK NI NI B1196 O1 EDO B1197 2655 1555 2.05 LINK NI NI B1196 O2 EDO B1197 2655 1555 2.04 LINK NI NI B1196 O HOH B2003 1555 3665 2.07 LINK NI NI B1196 O HOH B2015 1555 3665 2.04 LINK NI NI B1196 O HOH B2140 1555 1555 2.09 CISPEP 1 GLY A 182 PRO A 183 0 -6.38 CISPEP 2 PHE A 299 PRO A 300 0 -4.42 CISPEP 3 ASN B 111 PRO B 112 0 -2.00 SITE 1 AC1 5 HIS A 206 HIS A 211 ASP A 360 EDO A1442 SITE 2 AC1 5 HOH A2423 SITE 1 AC2 6 HIS B 14 GLU B 18 GLU B 160 HOH B2055 SITE 2 AC2 6 HOH B2056 HOH B2269 SITE 1 AC3 5 HIS B 56 EDO B1197 HOH B2003 HOH B2015 SITE 2 AC3 5 HOH B2140 SITE 1 AC4 7 CYS A 79 HIS A 81 ARG A 82 CYS A 99 SITE 2 AC4 7 TYR A 101 HIS A 102 TRP A 104 SITE 1 AC5 8 ASN A 199 PHE A 200 ASP A 203 HIS A 206 SITE 2 AC5 8 ASN A 295 ASP A 360 FE A1441 HOH A2423 SITE 1 AC6 9 LYS A 54 GLU A 90 PRO A 184 LYS A 186 SITE 2 AC6 9 TRP A 325 EOH A1445 HOH A2324 GLU B 70 SITE 3 AC6 9 ARG B 183 SITE 1 AC7 3 LYS A 30 ARG A 35 ASP A 151 SITE 1 AC8 11 TYR A 174 MET B 2 ASN B 4 GLU B 7 SITE 2 AC8 11 HIS B 56 NI B1196 HOH B2003 HOH B2015 SITE 3 AC8 11 HOH B2140 HOH B2299 HOH B2300 SITE 1 AC9 7 TYR B 88 GLN B 102 LEU B 191 VAL B 192 SITE 2 AC9 7 PHE B 193 HOH B2301 HOH B2302 SITE 1 BC1 7 THR B 35 THR B 39 VAL B 120 ASN B 122 SITE 2 BC1 7 VAL B 123 HOH B2303 HOH B2304 SITE 1 BC2 5 ASP B 46 ARG B 115 PHE B 116 HOH B2305 SITE 2 BC2 5 HOH B2306 SITE 1 BC3 8 PRO A 47 SER A 48 ASP A 51 HOH A2060 SITE 2 BC3 8 ARG B 78 TYR B 79 GLN B 80 HOH B2307 SITE 1 BC4 9 LYS A 54 LYS A 56 GLU A 61 GLU A 90 SITE 2 BC4 9 LYS A 186 TRP A 325 EDO A1443 GLU B 149 SITE 3 BC4 9 HOH B2250 SITE 1 BC5 6 SER A 141 PHE A 142 HIS A 143 HOH A2190 SITE 2 BC5 6 HOH A2424 GLU B 17 SITE 1 BC6 6 ASP A 163 TYR A 392 GLY A 393 PRO A 398 SITE 2 BC6 6 GLY A 399 HOH A2395 SITE 1 BC7 5 HIS A 88 ALA A 89 HOH A2061 ASN B 111 SITE 2 BC7 5 HOH B2218 SITE 1 BC8 3 ARG A 288 HOH A2303 HOH A2426 SITE 1 BC9 4 VAL A 188 GLN B 186 THR B 187 HIS B 188 SITE 1 CC1 6 LEU B 71 PRO B 112 LYS B 113 ALA B 146 SITE 2 CC1 6 ARG B 147 ARG B 148 SITE 1 CC2 4 GLU B 17 GLU B 18 ARG B 21 HOH B2308 SITE 1 CC3 5 ASN A 93 GLU B 76 ARG B 77 ARG B 78 SITE 2 CC3 5 TYR B 79 SITE 1 CC4 5 TRP A 166 ARG A 286 HOH A2299 ASN B 4 SITE 2 CC4 5 GLN B 6 SITE 1 CC5 3 PRO B 60 LYS B 164 LYS B 172 SITE 1 CC6 1 HIS B 14 CRYST1 121.586 121.586 84.356 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008225 0.004748 0.000000 0.00000 SCALE2 0.000000 0.009497 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011855 0.00000