HEADER CYTOKINE 18-SEP-98 2BMP OBSLTE 12-MAR-00 2BMP 3BMP TITLE HUMAN BONE MORPHOGENETIC PROTEIN-2 (BMP-2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (BONE MORPHOGENETIC PROTEIN-2 (BMP-2)); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI KEYWDS BONE MORPHOGENETIC PROTEIN, CYSTINE-KNOT, TGFB-FAMILY EXPDTA X-RAY DIFFRACTION AUTHOR C.SCHEUFLER,W.SEBALD,M.HUELSMEYER REVDAT 2 12-MAR-00 2BMP 1 OBSLTE REVDAT 1 18-SEP-99 2BMP 0 JRNL AUTH C.SCHEUFLER,W.SEBALD,M.HUELSMEYER JRNL TITL CRYSTAL STRUCTURE OF HUMAN BONE MORPHOGENETIC JRNL TITL 2 PROTEIN-2 AT 2.7 ANGSTROMS RESOLUTION JRNL REF J.MOL.BIOL. V. 287 103 1999 JRNL REFN ASTM JMOBAK UK ISSN 0022-2836 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.RUPPERT,E.HOFFMANN,W.SEBALD REMARK 1 TITL HUMAN BONE MORPHOGENETIC PROTEIN 2 CONTAINS A REMARK 1 TITL 2 HEPARIN-BINDING SITE WHICH MODIFIES ITS BIOLOGICAL REMARK 1 TITL 3 ACTIVITY REMARK 1 REF EUR.J.BIOCHEM. V. 237 295 1996 REMARK 1 REFN ASTM EJBCAI IX ISSN 0014-2956 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 12.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 4647 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.240 REMARK 3 R VALUE (WORKING SET) : 0.249 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.000 REMARK 3 FREE R VALUE TEST SET COUNT : 303 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 826 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 30 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.013 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.017 ; 0.020 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.023 ; 0.030 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.027 ; 0.050 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.141 ; 0.150 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.196 ; 0.300 REMARK 3 MULTIPLE TORSION (A) : 0.245 ; 0.300 REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : 0.000 ; 15.000 REMARK 3 PLANAR (DEGREES) : 5.000 ; 7.000 REMARK 3 STAGGERED (DEGREES) : 19.100; 15.000 REMARK 3 TRANSVERSE (DEGREES) : 31.300; 20.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.044 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.607 ; 3.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.444 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.788 ; 4.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2BMP COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUL-1999. REMARK 100 THE RCSB ID CODE IS RCSB007115. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-1997 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.40 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200BH REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : COLLIMATOR REMARK 200 REMARK 200 DETECTOR TYPE : MULTIWIRE REMARK 200 DETECTOR MANUFACTURER : SIEMENS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 4647 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 10.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.04100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.12300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1TFG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS CRYSTALLIZED FROM 100 REMARK 280 MM LITHIUM SULFATE, 12% TERT-BUTANOL, 50 MM CITRATE, PH 5.4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 2/3+X,1/3+Y,1/3+Z REMARK 290 8555 2/3-Y,1/3+X-Y,1/3+Z REMARK 290 9555 2/3-X+Y,1/3-X,1/3+Z REMARK 290 10555 2/3+Y,1/3+X,1/3-Z REMARK 290 11555 2/3+X-Y,1/3-Y,1/3-Z REMARK 290 12555 2/3-X,1/3-X+Y,1/3-Z REMARK 290 13555 1/3+X,2/3+Y,2/3+Z REMARK 290 14555 1/3-Y,2/3+X-Y,2/3+Z REMARK 290 15555 1/3-X+Y,2/3-X,2/3+Z REMARK 290 16555 1/3+Y,2/3+X,2/3-Z REMARK 290 17555 1/3+X-Y,2/3-Y,2/3-Z REMARK 290 18555 1/3-X,2/3-X+Y,2/3-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 45.72000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 26.39645 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 35.91667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 45.72000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 26.39645 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 35.91667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 45.72000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 26.39645 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 35.91667 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 45.72000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 26.39645 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 35.91667 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 45.72000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 26.39645 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 35.91667 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 45.72000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 26.39645 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 35.91667 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 52.79291 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 71.83333 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 52.79291 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 71.83333 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 52.79291 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 71.83333 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 52.79291 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 71.83333 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 52.79291 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 71.83333 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 52.79291 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 71.83333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, W REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 -45.72000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 26.39645 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 35.91667 REMARK 525 REMARK 525 SOLVENT REMARK 525 THE FOLLOWING SOLVENT MOLECULES LIE FARTHER THAN EXPECTED REMARK 525 FROM THE PROTEIN OR NUCLEIC ACID MOLECULE AND MAY BE REMARK 525 ASSOCIATED WITH A SYMMETRY RELATED MOLECULE (M=MODEL REMARK 525 NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH W 13 DISTANCE = 6.53 ANGSTROMS REMARK 999 REMARK 999 SEQUENCE REMARK 999 DUE TO DISORDER NINE N-TERMINAL RESIDUES ARE MISSING IN REMARK 999 THE ENTRY. DBREF 2BMP A 10 114 UNP P12643 BMP2_HUMAN 292 396 SEQRES 1 A 105 LEU LYS SER SER CYS LYS ARG HIS PRO LEU TYR VAL ASP SEQRES 2 A 105 PHE SER ASP VAL GLY TRP ASN ASP TRP ILE VAL ALA PRO SEQRES 3 A 105 PRO GLY TYR HIS ALA PHE TYR CYS HIS GLY GLU CYS PRO SEQRES 4 A 105 PHE PRO LEU ALA ASP HIS LEU ASN SER THR ASN HIS ALA SEQRES 5 A 105 ILE VAL GLN THR LEU VAL ASN SER VAL ASN SER LYS ILE SEQRES 6 A 105 PRO LYS ALA CYS CYS VAL PRO THR GLU LEU SER ALA ILE SEQRES 7 A 105 SER MET LEU TYR LEU ASP GLU ASN GLU LYS VAL VAL LEU SEQRES 8 A 105 LYS ASN TYR GLN ASP MET VAL VAL GLU GLY CYS GLY CYS SEQRES 9 A 105 ARG FORMUL 2 HOH *30(H2 O1) HELIX 1 1 ASN A 59 VAL A 70 1 12 SHEET 1 A 2 LYS A 15 HIS A 17 0 SHEET 2 A 2 TYR A 42 HIS A 44 -1 N HIS A 44 O LYS A 15 SHEET 1 B 2 TYR A 20 ASP A 22 0 SHEET 2 B 2 GLY A 37 HIS A 39 -1 N TYR A 38 O VAL A 21 SHEET 1 C 2 ILE A 87 LEU A 92 0 SHEET 2 C 2 VAL A 98 TYR A 103 -1 N TYR A 103 O ILE A 87 SHEET 1 D 2 CYS A 78 GLU A 83 0 SHEET 2 D 2 GLY A 110 ARG A 114 -1 N ARG A 114 O CYS A 78 SSBOND 1 CYS A 14 CYS A 79 SSBOND 2 CYS A 43 CYS A 111 SSBOND 3 CYS A 47 CYS A 113 CISPEP 1 ALA A 34 PRO A 35 0 -0.58 CRYST1 91.440 91.440 107.750 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010936 0.006314 0.000000 0.00000 SCALE2 0.000000 0.012628 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009281 0.00000