HEADER SUGAR BINDING PROTEIN 17-MAR-05 2BMZ TITLE BANANA LECTIN BOUND TO XYL-B1,3 MAN-A-O-METHYL (XM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIPENING-ASSOCIATED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BANANA LECTIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUSA ACUMINATA; SOURCE 3 ORGANISM_COMMON: BANANA; SOURCE 4 ORGANISM_TAXID: 4641 KEYWDS MANNOSE-SPECIFIC JACALIN-RELATED LECTIN, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.L.MEAGHER,H.C.WINTER,P.EZELL,I.J.GOLDSTEIN,J.A.STUCKEY REVDAT 6 13-DEC-23 2BMZ 1 REMARK HETSYN REVDAT 5 29-JUL-20 2BMZ 1 COMPND REMARK HET HETNAM REVDAT 5 2 1 FORMUL LINK SITE ATOM REVDAT 4 20-NOV-13 2BMZ 1 HEADER KEYWDS REMARK VERSN REVDAT 4 2 1 FORMUL REVDAT 3 24-FEB-09 2BMZ 1 VERSN REVDAT 2 29-SEP-05 2BMZ 1 JRNL REVDAT 1 16-JUN-05 2BMZ 0 JRNL AUTH J.L.MEAGHER,H.C.WINTER,P.EZELL,I.J.GOLDSTEIN,J.A.STUCKEY JRNL TITL CRYSTAL STRUCTURE OF BANANA LECTIN REVEALS A NOVEL SECOND JRNL TITL 2 SUGAR BINDING SITE. JRNL REF GLYCOBIOLOGY V. 15 1033 2005 JRNL REFN ISSN 0959-6658 JRNL PMID 15944373 JRNL DOI 10.1093/GLYCOB/CWI088 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 9.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 479088.030 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 21764 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2127 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.55 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3092 REMARK 3 BIN R VALUE (WORKING SET) : 0.3220 REMARK 3 BIN FREE R VALUE : 0.3810 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 314 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.021 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2042 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 110 REMARK 3 SOLVENT ATOMS : 221 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.34 REMARK 3 ESD FROM SIGMAA (A) : 0.35 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.39 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.42 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.790 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.500 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.530 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.060 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.050 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.32 REMARK 3 BSOL : 44.42 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER.PARAM REMARK 3 PARAMETER FILE 4 : XLM.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : XLM.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2BMZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-MAR-05. REMARK 100 THE DEPOSITION ID IS D_1290023298. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUN-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.25 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 32-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2834 REMARK 200 MONOCHROMATOR : DIAMOND III REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29782 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.000 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.00 REMARK 200 R MERGE FOR SHELL (I) : 0.34000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CCP4 REMARK 200 STARTING MODEL: PDB ENTRY 2BMY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.275M AMMONIUM SULFATE 30MM CADMIUM REMARK 280 CHLORIDE 0.1M TRIS-HCL, PH=8.25, PH 8.25 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 97.87667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 48.93833 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 48.93833 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 97.87667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 2240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E, F REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -40.81150 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 70.68759 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 48.93833 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 1350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 40.81150 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 70.68759 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 48.93833 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 GLY B 3 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ALA A 81 CB REMARK 480 ALA B 81 CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA A 9 N - CA - C ANGL. DEV. = -20.7 DEGREES REMARK 500 ALA B 9 N - CA - C ANGL. DEV. = -17.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 9 79.32 110.14 REMARK 500 ARG A 25 124.85 -173.61 REMARK 500 VAL A 36 -167.78 -129.26 REMARK 500 GLN A 68 -173.76 -69.98 REMARK 500 ALA A 81 -177.34 -171.21 REMARK 500 ASN A 97 15.21 -69.68 REMARK 500 ALA B 9 78.33 117.97 REMARK 500 VAL B 36 -164.99 -118.34 REMARK 500 TYR B 46 103.62 -163.91 REMARK 500 HIS B 84 39.99 35.15 REMARK 500 ASN B 97 11.07 -63.37 REMARK 500 LYS B 98 -30.77 -137.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2010 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH B2057 DISTANCE = 5.98 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1145 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 41 OD2 REMARK 620 2 ASP A 41 OD1 53.8 REMARK 620 3 HIS A 54 ND1 79.4 76.2 REMARK 620 4 HIS B 84 NE2 142.0 89.6 103.5 REMARK 620 5 HOH B2041 O 79.0 132.6 101.2 135.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1146 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 64 OE2 REMARK 620 2 HOH B2072 O 73.8 REMARK 620 3 HOH B2073 O 76.5 98.6 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BMY RELATED DB: PDB REMARK 900 BANANA LECTIN REMARK 900 RELATED ID: 2BN0 RELATED DB: PDB REMARK 900 BANANA LECTIN BOUND TO LAMINARIBIOSE DBREF 2BMZ A 1 141 UNP O22321 O22321_MUSAC 1 141 DBREF 2BMZ B 1 141 UNP O22321 O22321_MUSAC 1 141 SEQRES 1 A 141 MET ASN GLY ALA ILE LYS VAL GLY ALA TRP GLY GLY ASN SEQRES 2 A 141 GLY GLY SER ALA PHE ASP MET GLY PRO ALA TYR ARG ILE SEQRES 3 A 141 ILE SER VAL LYS ILE PHE SER GLY ASP VAL VAL ASP GLY SEQRES 4 A 141 VAL ASP VAL THR PHE THR TYR TYR GLY LYS THR GLU THR SEQRES 5 A 141 ARG HIS TYR GLY GLY SER GLY GLY THR PRO HIS GLU ILE SEQRES 6 A 141 VAL LEU GLN GLU GLY GLU TYR LEU VAL GLY MET ALA GLY SEQRES 7 A 141 GLU VAL ALA ASN TYR HIS GLY ALA VAL VAL LEU GLY LYS SEQRES 8 A 141 LEU GLY PHE SER THR ASN LYS LYS ALA TYR GLY PRO PHE SEQRES 9 A 141 GLY ASN THR GLY GLY THR PRO PHE SER LEU PRO ILE ALA SEQRES 10 A 141 ALA GLY LYS ILE SER GLY PHE PHE GLY ARG GLY GLY LYS SEQRES 11 A 141 PHE LEU ASP ALA ILE GLY VAL TYR LEU GLU PRO SEQRES 1 B 141 MET ASN GLY ALA ILE LYS VAL GLY ALA TRP GLY GLY ASN SEQRES 2 B 141 GLY GLY SER ALA PHE ASP MET GLY PRO ALA TYR ARG ILE SEQRES 3 B 141 ILE SER VAL LYS ILE PHE SER GLY ASP VAL VAL ASP GLY SEQRES 4 B 141 VAL ASP VAL THR PHE THR TYR TYR GLY LYS THR GLU THR SEQRES 5 B 141 ARG HIS TYR GLY GLY SER GLY GLY THR PRO HIS GLU ILE SEQRES 6 B 141 VAL LEU GLN GLU GLY GLU TYR LEU VAL GLY MET ALA GLY SEQRES 7 B 141 GLU VAL ALA ASN TYR HIS GLY ALA VAL VAL LEU GLY LYS SEQRES 8 B 141 LEU GLY PHE SER THR ASN LYS LYS ALA TYR GLY PRO PHE SEQRES 9 B 141 GLY ASN THR GLY GLY THR PRO PHE SER LEU PRO ILE ALA SEQRES 10 B 141 ALA GLY LYS ILE SER GLY PHE PHE GLY ARG GLY GLY LYS SEQRES 11 B 141 PHE LEU ASP ALA ILE GLY VAL TYR LEU GLU PRO HET MMA C 1 13 HET XYP C 2 9 HET MMA D 1 13 HET XYP D 2 9 HET MMA E 1 13 HET XYP E 2 9 HET MMA F 1 13 HET XYP F 2 9 HET SO4 A1141 5 HET SO4 A1144 5 HET CD A1145 1 HET CD A1146 1 HET SO4 B1143 5 HET SO4 B1145 5 HETNAM MMA METHYL ALPHA-D-MANNOPYRANOSIDE HETNAM XYP BETA-D-XYLOPYRANOSE HETNAM SO4 SULFATE ION HETNAM CD CADMIUM ION HETSYN MMA O1-METHYL-MANNOSE; METHYL ALPHA-D-MANNOSIDE; METHYL D- HETSYN 2 MMA MANNOSIDE; METHYL MANNOSIDE HETSYN XYP BETA-D-XYLOSE; D-XYLOSE; XYLOSE FORMUL 3 MMA 4(C7 H14 O6) FORMUL 3 XYP 4(C5 H10 O5) FORMUL 7 SO4 4(O4 S 2-) FORMUL 9 CD 2(CD 2+) FORMUL 13 HOH *221(H2 O) SHEET 1 AA 4 ILE A 5 GLY A 11 0 SHEET 2 AA 4 LEU A 132 GLU A 140 -1 O ILE A 135 N TRP A 10 SHEET 3 AA 4 LYS A 120 GLY A 128 -1 O LYS A 120 N GLU A 140 SHEET 4 AA 4 SER A 16 PRO A 22 -1 O SER A 16 N GLY A 128 SHEET 1 AB 4 LYS A 49 GLY A 56 0 SHEET 2 AB 4 VAL A 37 TYR A 46 -1 O VAL A 40 N TYR A 55 SHEET 3 AB 4 ARG A 25 SER A 33 -1 O ARG A 25 N THR A 45 SHEET 4 AB 4 THR A 61 VAL A 66 -1 O THR A 61 N SER A 33 SHEET 1 AC 4 ALA A 100 PHE A 104 0 SHEET 2 AC 4 ALA A 86 THR A 96 -1 O LEU A 92 N PHE A 104 SHEET 3 AC 4 LEU A 73 TYR A 83 -1 N VAL A 74 O SER A 95 SHEET 4 AC 4 THR A 110 PRO A 115 -1 O THR A 110 N VAL A 80 SHEET 1 BA 4 ILE B 5 GLY B 11 0 SHEET 2 BA 4 ALA B 134 GLU B 140 -1 O ILE B 135 N TRP B 10 SHEET 3 BA 4 LYS B 120 GLY B 128 -1 O LYS B 120 N GLU B 140 SHEET 4 BA 4 SER B 16 ASP B 19 -1 O SER B 16 N GLY B 128 SHEET 1 BB 4 LYS B 49 GLY B 56 0 SHEET 2 BB 4 VAL B 37 TYR B 46 -1 O VAL B 40 N TYR B 55 SHEET 3 BB 4 ARG B 25 SER B 33 -1 O ARG B 25 N THR B 45 SHEET 4 BB 4 THR B 61 VAL B 66 -1 O THR B 61 N SER B 33 SHEET 1 BC 4 ALA B 100 PHE B 104 0 SHEET 2 BC 4 ALA B 86 THR B 96 -1 O LEU B 92 N PHE B 104 SHEET 3 BC 4 LEU B 73 TYR B 83 -1 N VAL B 74 O SER B 95 SHEET 4 BC 4 THR B 110 PRO B 115 -1 O THR B 110 N VAL B 80 LINK O3 MMA C 1 C1 XYP C 2 1555 1555 1.38 LINK O3 MMA D 1 C1 XYP D 2 1555 1555 1.38 LINK O3 MMA E 1 C1 XYP E 2 1555 1555 1.38 LINK O3 MMA F 1 C1 XYP F 2 1555 1555 1.39 LINK OD2 ASP A 41 CD CD A1145 1555 1555 2.15 LINK OD1 ASP A 41 CD CD A1145 1555 1555 2.70 LINK ND1 HIS A 54 CD CD A1145 1555 1555 2.40 LINK CD CD A1145 NE2 HIS B 84 1555 1555 1.86 LINK CD CD A1145 O HOH B2041 1555 1555 2.92 LINK CD CD A1146 OE2 GLU B 64 1555 6665 2.59 LINK CD CD A1146 O HOH B2072 1555 6665 2.85 LINK CD CD A1146 O HOH B2073 1555 6665 2.80 CISPEP 1 GLY A 102 PRO A 103 0 0.16 CISPEP 2 GLY B 102 PRO B 103 0 -0.09 CRYST1 81.623 81.623 146.815 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012251 0.007073 0.000000 0.00000 SCALE2 0.000000 0.014147 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006811 0.00000