HEADER    TRANSFERASE                             23-MAR-05   2BNE              
TITLE     THE STRUCTURE OF E. COLI UMP KINASE IN COMPLEX WITH UMP               
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: URIDYLATE KINASE;                                          
COMPND   3 CHAIN: A, B;                                                         
COMPND   4 SYNONYM: UMP KINASE, UK, URIDINE MONOPHOSPHATE KINASE;               
COMPND   5 EC: 2.7.4.4;                                                         
COMPND   6 ENGINEERED: YES;                                                     
COMPND   7 MUTATION: YES                                                        
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI;                               
SOURCE   3 ORGANISM_TAXID: 83333;                                               
SOURCE   4 STRAIN: K12;                                                         
SOURCE   5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   6 EXPRESSION_SYSTEM_TAXID: 469008;                                     
SOURCE   7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);                                 
SOURCE   8 EXPRESSION_SYSTEM_PLASMID: PET28A                                    
KEYWDS    TRANSFERASE, NUCLEOSIDE MONOPHOSPHATE KINASE, PYRIMIDINE BIOSYNTHESIS 
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    P.BRIOZZO,C.EVRIN,P.MEYER,L.ASSAIRI,N.JOLY,O.BARZU,A.M.GILLES         
REVDAT   4   13-DEC-23 2BNE    1       REMARK                                   
REVDAT   3   24-FEB-09 2BNE    1       VERSN                                    
REVDAT   2   06-JUL-05 2BNE    1       JRNL                                     
REVDAT   1   25-APR-05 2BNE    0                                                
JRNL        AUTH   P.BRIOZZO,C.EVRIN,P.MEYER,L.ASSAIRI,N.JOLY,O.BARZU,          
JRNL        AUTH 2 A.M.GILLES                                                   
JRNL        TITL   STRUCTURE OF ESCHERICHIA COLI UMP KINASE DIFFERS FROM THAT   
JRNL        TITL 2 OF OTHER NUCLEOSIDE MONOPHOSPHATE KINASES AND SHEDS NEW      
JRNL        TITL 3 LIGHT ON ENZYME REGULATION.                                  
JRNL        REF    J.BIOL.CHEM.                  V. 280 25533 2005              
JRNL        REFN                   ISSN 0021-9258                               
JRNL        PMID   15857829                                                     
JRNL        DOI    10.1074/JBC.M501849200                                       
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.30 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : CNS 1.1                                              
REMARK   3   AUTHORS     : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-              
REMARK   3               : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,              
REMARK   3               : READ,RICE,SIMONSON,WARREN                            
REMARK   3                                                                      
REMARK   3  REFINEMENT TARGET : NULL                                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 25.00                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : 0.000                          
REMARK   3   DATA CUTOFF HIGH         (ABS(F)) : 10000.000                      
REMARK   3   DATA CUTOFF LOW          (ABS(F)) : NULL                           
REMARK   3   COMPLETENESS (WORKING+TEST)   (%) : 95.2                           
REMARK   3   NUMBER OF REFLECTIONS             : 18650                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE            (WORKING SET) : 0.207                           
REMARK   3   FREE R VALUE                     : 0.254                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 9.400                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 1847                            
REMARK   3   ESTIMATED ERROR OF FREE R VALUE  : NULL                            
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : NULL                         
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : NULL                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : NULL                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : NULL                         
REMARK   3   REFLECTIONS IN BIN    (WORKING SET) : NULL                         
REMARK   3   BIN R VALUE           (WORKING SET) : NULL                         
REMARK   3   BIN FREE R VALUE                    : NULL                         
REMARK   3   BIN FREE R VALUE TEST SET SIZE  (%) : NULL                         
REMARK   3   BIN FREE R VALUE TEST SET COUNT     : NULL                         
REMARK   3   ESTIMATED ERROR OF BIN FREE R VALUE : NULL                         
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 3560                                    
REMARK   3   NUCLEIC ACID ATOMS       : 0                                       
REMARK   3   HETEROGEN ATOMS          : 84                                      
REMARK   3   SOLVENT ATOMS            : 95                                      
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : 34.60                          
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 35.20                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : -1.34800                                             
REMARK   3    B22 (A**2) : -1.34800                                             
REMARK   3    B33 (A**2) : 2.69600                                              
REMARK   3    B12 (A**2) : -3.45800                                             
REMARK   3    B13 (A**2) : 0.00000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED COORDINATE ERROR.                                         
REMARK   3   ESD FROM LUZZATI PLOT        (A) : NULL                            
REMARK   3   ESD FROM SIGMAA              (A) : NULL                            
REMARK   3   LOW RESOLUTION CUTOFF        (A) : NULL                            
REMARK   3                                                                      
REMARK   3  CROSS-VALIDATED ESTIMATED COORDINATE ERROR.                         
REMARK   3   ESD FROM C-V LUZZATI PLOT    (A) : NULL                            
REMARK   3   ESD FROM C-V SIGMAA          (A) : NULL                            
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES.                                   
REMARK   3   BOND LENGTHS                 (A) : 0.006                           
REMARK   3   BOND ANGLES            (DEGREES) : 1.180                           
REMARK   3   DIHEDRAL ANGLES        (DEGREES) : NULL                            
REMARK   3   IMPROPER ANGLES        (DEGREES) : NULL                            
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL MODEL : NULL                                      
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.    RMS    SIGMA                
REMARK   3   MAIN-CHAIN BOND              (A**2) : NULL  ; NULL                 
REMARK   3   MAIN-CHAIN ANGLE             (A**2) : NULL  ; NULL                 
REMARK   3   SIDE-CHAIN BOND              (A**2) : NULL  ; NULL                 
REMARK   3   SIDE-CHAIN ANGLE             (A**2) : NULL  ; NULL                 
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELING.                                              
REMARK   3   METHOD USED : FLAT MODEL                                           
REMARK   3   KSOL        : 0.36                                                 
REMARK   3   BSOL        : 45.81                                                
REMARK   3                                                                      
REMARK   3  NCS MODEL : NULL                                                    
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS.                         RMS   SIGMA/WEIGHT          
REMARK   3   GROUP  1  POSITIONAL            (A) : NULL  ; NULL                 
REMARK   3   GROUP  1  B-FACTOR           (A**2) : NULL  ; NULL                 
REMARK   3                                                                      
REMARK   3  PARAMETER FILE  1  : PROTEIN_REP.PARAM                              
REMARK   3  PARAMETER FILE  2  : GOL.PARAM                                      
REMARK   3  PARAMETER FILE  3  : WATER_REP.PARAM                                
REMARK   3  PARAMETER FILE  4  : ION.PARAM                                      
REMARK   3  PARAMETER FILE  5  : NULL                                           
REMARK   3  TOPOLOGY FILE  1   : PROTEIN.TOP                                    
REMARK   3  TOPOLOGY FILE  2   : GOL.TOP                                        
REMARK   3  TOPOLOGY FILE  3   : WATER.TOP                                      
REMARK   3  TOPOLOGY FILE  4   : ION.TOP                                        
REMARK   3  TOPOLOGY FILE  5   : NULL                                           
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 2BNE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-MAR-05.                  
REMARK 100 THE DEPOSITION ID IS D_1290023419.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : NULL                               
REMARK 200  TEMPERATURE           (KELVIN) : 100.0                              
REMARK 200  PH                             : 8.50                               
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : ESRF                               
REMARK 200  BEAMLINE                       : ID14-2                             
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 0.980                              
REMARK 200  MONOCHROMATOR                  : NULL                               
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : NULL                               
REMARK 200  DETECTOR MANUFACTURER          : NULL                               
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : DENZO                              
REMARK 200  DATA SCALING SOFTWARE          : SCALEPACK                          
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 19016                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.300                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 25.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : 2.000                              
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 95.1                               
REMARK 200  DATA REDUNDANCY                : 2.800                              
REMARK 200  R MERGE                    (I) : 0.11000                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 11.0000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : NULL                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 93.8                               
REMARK 200  DATA REDUNDANCY IN SHELL       : NULL                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.48000                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 2.700                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: AMORE                                                 
REMARK 200 STARTING MODEL: PDB ENTRY 2BND                                       
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 43.00                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: PH 8.50                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3                              
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -Y,X-Y,Z                                                
REMARK 290       3555   -X+Y,-X,Z                                               
REMARK 290       4555   X+2/3,Y+1/3,Z+1/3                                       
REMARK 290       5555   -Y+2/3,X-Y+1/3,Z+1/3                                    
REMARK 290       6555   -X+Y+2/3,-X+1/3,Z+1/3                                   
REMARK 290       7555   X+1/3,Y+2/3,Z+2/3                                       
REMARK 290       8555   -Y+1/3,X-Y+2/3,Z+2/3                                    
REMARK 290       9555   -X+Y+1/3,-X+2/3,Z+2/3                                   
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   3 -0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   3 -0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   3  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   4  1.000000  0.000000  0.000000       70.21700            
REMARK 290   SMTRY2   4  0.000000  1.000000  0.000000       40.53980            
REMARK 290   SMTRY3   4  0.000000  0.000000  1.000000       19.99767            
REMARK 290   SMTRY1   5 -0.500000 -0.866025  0.000000       70.21700            
REMARK 290   SMTRY2   5  0.866025 -0.500000  0.000000       40.53980            
REMARK 290   SMTRY3   5  0.000000  0.000000  1.000000       19.99767            
REMARK 290   SMTRY1   6 -0.500000  0.866025  0.000000       70.21700            
REMARK 290   SMTRY2   6 -0.866025 -0.500000  0.000000       40.53980            
REMARK 290   SMTRY3   6  0.000000  0.000000  1.000000       19.99767            
REMARK 290   SMTRY1   7  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   7  0.000000  1.000000  0.000000       81.07961            
REMARK 290   SMTRY3   7  0.000000  0.000000  1.000000       39.99533            
REMARK 290   SMTRY1   8 -0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   8  0.866025 -0.500000  0.000000       81.07961            
REMARK 290   SMTRY3   8  0.000000  0.000000  1.000000       39.99533            
REMARK 290   SMTRY1   9 -0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   9 -0.866025 -0.500000  0.000000       81.07961            
REMARK 290   SMTRY3   9  0.000000  0.000000  1.000000       39.99533            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC                         
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC                  
REMARK 350 SOFTWARE USED: PQS                                                   
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 350   BIOMT1   2 -0.500000 -0.866025  0.000000      140.43400            
REMARK 350   BIOMT2   2  0.866025 -0.500000  0.000000        0.00000            
REMARK 350   BIOMT3   2  0.000000  0.000000  1.000000        0.00000            
REMARK 350   BIOMT1   3 -0.500000  0.866025  0.000000       70.21700            
REMARK 350   BIOMT2   3 -0.866025 -0.500000  0.000000      121.61941            
REMARK 350   BIOMT3   3  0.000000  0.000000  1.000000        0.00000            
REMARK 400                                                                      
REMARK 400 COMPOUND                                                             
REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ASP 158 TO ASN                        
REMARK 400 ENGINEERED RESIDUE IN CHAIN B, ASP 158 TO ASN                        
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     MET A     1                                                      
REMARK 465     ALA A     2                                                      
REMARK 465     THR A     3                                                      
REMARK 465     ASN A     4                                                      
REMARK 465     ALA A   176                                                      
REMARK 465     LYS A   177                                                      
REMARK 465     ASP A   178                                                      
REMARK 465     MET B     1                                                      
REMARK 465     ALA B     2                                                      
REMARK 465     GLY B    26                                                      
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470     THR B   3    OG1  CG2                                            
REMARK 470     ASN B   4    CG   OD1  ND2                                       
REMARK 480                                                                      
REMARK 480 ZERO OCCUPANCY ATOM                                                  
REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO                  
REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS                
REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME;              
REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):         
REMARK 480   M RES C SSEQI ATOMS                                                
REMARK 480     LYS B   68   CD   CE   NZ                                        
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500    ARG A 127   NE  -  CZ  -  NH1 ANGL. DEV. =  -5.1 DEGREES          
REMARK 500    ARG A 127   NE  -  CZ  -  NH2 ANGL. DEV. =   4.2 DEGREES          
REMARK 500    ARG B 127   NE  -  CZ  -  NH1 ANGL. DEV. =   5.0 DEGREES          
REMARK 500    ARG B 127   NE  -  CZ  -  NH2 ANGL. DEV. =  -5.4 DEGREES          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    LEU A  60      -60.01   -127.04                                   
REMARK 500    ASN A 111      138.07    -30.29                                   
REMARK 500    ASP A 174      104.53    -50.64                                   
REMARK 500    ALA A 181      130.55    -36.01                                   
REMARK 500    MET A 200      178.06     45.11                                   
REMARK 500    THR A 240     -145.69   -138.82                                   
REMARK 500    ASN B   4      -27.25     66.92                                   
REMARK 500    THR B  24      161.22     72.06                                   
REMARK 500    LEU B  60      -61.75   -126.76                                   
REMARK 500    ASN B 111      137.43    -28.12                                   
REMARK 500    ALA B 173      154.98    179.69                                   
REMARK 500    ASP B 174      106.55    -45.76                                   
REMARK 500    GLU B 196       39.09     40.00                                   
REMARK 500    VAL B 199      -54.97   -132.85                                   
REMARK 500    LYS B 234      106.85    -42.58                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE U5P A1242                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE U5P B1242                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1243                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC4                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1244                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC5                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1245                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC6                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1246                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC7                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B1243                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC8                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B1244                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC9                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B1245                 
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 2BND   RELATED DB: PDB                                   
REMARK 900 THE STRUCTURE OF E. COLI UMP KINASE IN COMPLEX WITH UDP              
REMARK 900 RELATED ID: 2BNF   RELATED DB: PDB                                   
REMARK 900 THE STRUCTURE OF E. COLI UMP KINASE IN COMPLEX WITH UTP              
DBREF  2BNE A    1     1  PDB    2BNE     2BNE             1      1             
DBREF  2BNE A    2   241  UNP    P29464   PYRH_ECOLI       1    240             
DBREF  2BNE B    1     1  PDB    2BNE     2BNE             1      1             
DBREF  2BNE B    2   241  UNP    P29464   PYRH_ECOLI       1    240             
SEQADV 2BNE ASN A  159  UNP  P29464    ASP   158 ENGINEERED MUTATION            
SEQADV 2BNE ASN B  159  UNP  P29464    ASP   158 ENGINEERED MUTATION            
SEQRES   1 A  241  MET ALA THR ASN ALA LYS PRO VAL TYR LYS ARG ILE LEU          
SEQRES   2 A  241  LEU LYS LEU SER GLY GLU ALA LEU GLN GLY THR GLU GLY          
SEQRES   3 A  241  PHE GLY ILE ASP ALA SER ILE LEU ASP ARG MET ALA GLN          
SEQRES   4 A  241  GLU ILE LYS GLU LEU VAL GLU LEU GLY ILE GLN VAL GLY          
SEQRES   5 A  241  VAL VAL ILE GLY GLY GLY ASN LEU PHE ARG GLY ALA GLY          
SEQRES   6 A  241  LEU ALA LYS ALA GLY MET ASN ARG VAL VAL GLY ASP HIS          
SEQRES   7 A  241  MET GLY MET LEU ALA THR VAL MET ASN GLY LEU ALA MET          
SEQRES   8 A  241  ARG ASP ALA LEU HIS ARG ALA TYR VAL ASN ALA ARG LEU          
SEQRES   9 A  241  MET SER ALA ILE PRO LEU ASN GLY VAL CYS ASP SER TYR          
SEQRES  10 A  241  SER TRP ALA GLU ALA ILE SER LEU LEU ARG ASN ASN ARG          
SEQRES  11 A  241  VAL VAL ILE LEU SER ALA GLY THR GLY ASN PRO PHE PHE          
SEQRES  12 A  241  THR THR ASP SER ALA ALA CYS LEU ARG GLY ILE GLU ILE          
SEQRES  13 A  241  GLU ALA ASN VAL VAL LEU LYS ALA THR LYS VAL ASP GLY          
SEQRES  14 A  241  VAL PHE THR ALA ASP PRO ALA LYS ASP PRO THR ALA THR          
SEQRES  15 A  241  MET TYR GLU GLN LEU THR TYR SER GLU VAL LEU GLU LYS          
SEQRES  16 A  241  GLU LEU LYS VAL MET ASP LEU ALA ALA PHE THR LEU ALA          
SEQRES  17 A  241  ARG ASP HIS LYS LEU PRO ILE ARG VAL PHE ASN MET ASN          
SEQRES  18 A  241  LYS PRO GLY ALA LEU ARG ARG VAL VAL MET GLY GLU LYS          
SEQRES  19 A  241  GLU GLY THR LEU ILE THR GLU                                  
SEQRES   1 B  241  MET ALA THR ASN ALA LYS PRO VAL TYR LYS ARG ILE LEU          
SEQRES   2 B  241  LEU LYS LEU SER GLY GLU ALA LEU GLN GLY THR GLU GLY          
SEQRES   3 B  241  PHE GLY ILE ASP ALA SER ILE LEU ASP ARG MET ALA GLN          
SEQRES   4 B  241  GLU ILE LYS GLU LEU VAL GLU LEU GLY ILE GLN VAL GLY          
SEQRES   5 B  241  VAL VAL ILE GLY GLY GLY ASN LEU PHE ARG GLY ALA GLY          
SEQRES   6 B  241  LEU ALA LYS ALA GLY MET ASN ARG VAL VAL GLY ASP HIS          
SEQRES   7 B  241  MET GLY MET LEU ALA THR VAL MET ASN GLY LEU ALA MET          
SEQRES   8 B  241  ARG ASP ALA LEU HIS ARG ALA TYR VAL ASN ALA ARG LEU          
SEQRES   9 B  241  MET SER ALA ILE PRO LEU ASN GLY VAL CYS ASP SER TYR          
SEQRES  10 B  241  SER TRP ALA GLU ALA ILE SER LEU LEU ARG ASN ASN ARG          
SEQRES  11 B  241  VAL VAL ILE LEU SER ALA GLY THR GLY ASN PRO PHE PHE          
SEQRES  12 B  241  THR THR ASP SER ALA ALA CYS LEU ARG GLY ILE GLU ILE          
SEQRES  13 B  241  GLU ALA ASN VAL VAL LEU LYS ALA THR LYS VAL ASP GLY          
SEQRES  14 B  241  VAL PHE THR ALA ASP PRO ALA LYS ASP PRO THR ALA THR          
SEQRES  15 B  241  MET TYR GLU GLN LEU THR TYR SER GLU VAL LEU GLU LYS          
SEQRES  16 B  241  GLU LEU LYS VAL MET ASP LEU ALA ALA PHE THR LEU ALA          
SEQRES  17 B  241  ARG ASP HIS LYS LEU PRO ILE ARG VAL PHE ASN MET ASN          
SEQRES  18 B  241  LYS PRO GLY ALA LEU ARG ARG VAL VAL MET GLY GLU LYS          
SEQRES  19 B  241  GLU GLY THR LEU ILE THR GLU                                  
HET    U5P  A1242      21                                                       
HET    GOL  A1243       6                                                       
HET    GOL  A1244       6                                                       
HET    GOL  A1245       6                                                       
HET    GOL  A1246       6                                                       
HET    U5P  B1242      21                                                       
HET    GOL  B1243       6                                                       
HET    GOL  B1244       6                                                       
HET    GOL  B1245       6                                                       
HETNAM     U5P URIDINE-5'-MONOPHOSPHATE                                         
HETNAM     GOL GLYCEROL                                                         
HETSYN     GOL GLYCERIN; PROPANE-1,2,3-TRIOL                                    
FORMUL   3  U5P    2(C9 H13 N2 O9 P)                                            
FORMUL   4  GOL    7(C3 H8 O3)                                                  
FORMUL  12  HOH   *95(H2 O)                                                     
HELIX    1   1 GLY A   18  GLN A   22  5                                   5    
HELIX    2   2 ASP A   30  LEU A   47  1                                  18    
HELIX    3   3 ARG A   62  ALA A   69  1                                   8    
HELIX    4   4 ASN A   72  ALA A   98  1                                  27    
HELIX    5   5 SER A  118  ASN A  128  1                                  11    
HELIX    6   6 THR A  144  ILE A  156  1                                  13    
HELIX    7   7 TYR A  189  LYS A  195  1                                   7    
HELIX    8   8 ASP A  201  HIS A  211  1                                  11    
HELIX    9   9 GLY A  224  MET A  231  1                                   8    
HELIX   10  10 GLY B   18  GLY B   23  1                                   6    
HELIX   11  11 ASP B   30  LEU B   47  1                                  18    
HELIX   12  12 ARG B   62  ALA B   69  1                                   8    
HELIX   13  13 ASN B   72  ALA B   98  1                                  27    
HELIX   14  14 SER B  118  ASN B  128  1                                  11    
HELIX   15  15 THR B  144  ILE B  156  1                                  13    
HELIX   16  16 SER B  190  LYS B  195  1                                   6    
HELIX   17  17 ASP B  201  HIS B  211  1                                  11    
HELIX   18  18 GLY B  224  GLY B  232  1                                   9    
SHEET    1  AA 9 ASP A 115  SER A 116  0                                        
SHEET    2  AA 9 ALA A 102  SER A 106  1  O  LEU A 104   N  ASP A 115           
SHEET    3  AA 9 VAL A 131  SER A 135  1  O  VAL A 131   N  ARG A 103           
SHEET    4  AA 9 GLN A  50  ILE A  55  1  O  VAL A  51   N  VAL A 132           
SHEET    5  AA 9 ARG A  11  LEU A  16  1  O  ILE A  12   N  GLY A  52           
SHEET    6  AA 9 VAL A 160  THR A 165  1  O  VAL A 160   N  LEU A  13           
SHEET    7  AA 9 ILE A 215  ASN A 219  1  O  ARG A 216   N  LYS A 163           
SHEET    8  AA 9 THR A 237  THR A 240 -1  O  THR A 237   N  VAL A 217           
SHEET    9  AA 9 GLN A 186  THR A 188  1  O  LEU A 187   N  THR A 240           
SHEET    1  BA 9 ASP B 115  SER B 116  0                                        
SHEET    2  BA 9 ALA B 102  SER B 106  1  O  LEU B 104   N  ASP B 115           
SHEET    3  BA 9 VAL B 131  SER B 135  1  O  VAL B 131   N  ARG B 103           
SHEET    4  BA 9 GLN B  50  ILE B  55  1  O  VAL B  51   N  VAL B 132           
SHEET    5  BA 9 ARG B  11  LEU B  16  1  O  ILE B  12   N  GLY B  52           
SHEET    6  BA 9 VAL B 160  THR B 165  1  O  VAL B 160   N  LEU B  13           
SHEET    7  BA 9 ILE B 215  ASN B 219  1  O  ARG B 216   N  LYS B 163           
SHEET    8  BA 9 THR B 237  THR B 240 -1  O  THR B 237   N  VAL B 217           
SHEET    9  BA 9 GLN B 186  THR B 188  1  O  LEU B 187   N  THR B 240           
SITE     1 AC1 16 GLY A  56  GLY A  57  GLY A  58  ARG A  62                    
SITE     2 AC1 16 GLY A  63  ASP A  77  GLY A  80  MET A  81                    
SITE     3 AC1 16 THR A 138  ASN A 140  PRO A 141  PHE A 143                    
SITE     4 AC1 16 THR A 144  THR A 145  HOH A2015  HOH A2042                    
SITE     1 AC2 16 GLY B  56  GLY B  57  GLY B  58  ARG B  62                    
SITE     2 AC2 16 GLY B  63  ASP B  77  GLY B  80  MET B  81                    
SITE     3 AC2 16 THR B  84  THR B 138  ASN B 140  PRO B 141                    
SITE     4 AC2 16 PHE B 143  THR B 144  THR B 145  HOH B2023                    
SITE     1 AC3  7 GLN A  39  LYS A  42  GOL A1244  HOH A2043                    
SITE     2 AC3  7 GLN B  39  GLU B  46  GOL B1244                               
SITE     1 AC4  5 GLN A  39  GLU A  46  GOL A1243  GLN B  39                    
SITE     2 AC4  5 LYS B  42                                                     
SITE     1 AC5  6 VAL A 192  LEU A 193  GLU A 196  LEU A 197                    
SITE     2 AC5  6 VAL A 199  MET A 200                                          
SITE     1 AC6  4 TYR A  99  VAL A 100  ASN A 101  ARG A 127                    
SITE     1 AC7  2 HIS A 211  ARG B  73                                          
SITE     1 AC8  5 LYS A 195  GOL A1243  GLN B  39  GLU B  43                    
SITE     2 AC8  5 ARG B 227                                                     
SITE     1 AC9  6 LYS B  10  GLN B  50  ARG B 127  ASN B 129                    
SITE     2 AC9  6 HOH B2004  HOH B2052                                          
CRYST1  140.434  140.434   59.993  90.00  90.00 120.00 H 3          18          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.007121  0.004111  0.000000        0.00000                         
SCALE2      0.000000  0.008222  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.016669        0.00000