data_2BNY # _entry.id 2BNY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.382 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2BNY pdb_00002bny 10.2210/pdb2bny/pdb PDBE EBI-23506 ? ? WWPDB D_1290023506 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1AQ3 unspecified 'STRUCTURE OF A MS2 COAT PROTEIN MUTANT IN COMPLEX WITH ANRNA OPERATOR' PDB 1AQ4 unspecified 'STRUCTURE OF A MS2 COAT PROTEIN MUTANT IN COMPLEX WITH ANRNA OPERATOR' PDB 1BMS unspecified 'MOL_ID: 1; MOLECULE: BACTERIOPHAGE MS2 CAPSID ; CHAIN: A, B, C; ENGINEERED: YES; MUTATION : P78N' PDB 1DZS unspecified 'MS2-RNA HAIRPIN (4ONE -5) COMPLEX' PDB 1GKV unspecified 'MS2-RNA HAIRPIN (C-7) COMPLEX' PDB 1GKW unspecified 'MS2-RNA HAIRPIN (G-10) COMPLEX' PDB 1KUO unspecified 'MS2-RNA HAIRPIN (C-10) COMPLEX' PDB 1MSC unspecified . PDB 1MST unspecified 'MOL_ID: 1; MOLECULE: BACTERIOPHAGE MS2 CAPSID ; CHAIN: A, B, C; ENGINEERED: YES; MUTATION : E76D' PDB 1MVA unspecified 'STRUCTURE OF A PROTEIN CAPSID OF THE T45A MUTANT OF PHAGEMS2' PDB 1MVB unspecified 'STRUCTURE OF A PROTEIN CAPSID OF THE T59S MUTANT OF PHAGEMS2' PDB 1U1Y unspecified ;CRYSTAL STRUCTURE OF A COMPLEX BETWEEN WT BACTERIOPHAGE MS2COAT PROTEIN AND AN F5 APTAMER RNA STEMLOOP WITH2AMINOPURINE SUBSTITUTED AT THE-10 POSITION ; PDB 1ZDH unspecified 'STRUCTURE OF BACTERIOPHAGE COAT PROTEIN- OPERATOR COMPLEX' PDB 1ZDI unspecified 'STRUCTURE OF MS2 PROTEIN CAPSID' PDB 1ZDJ unspecified 'STRUCTURE OF BACTERIOPHAGE COAT PROTEIN-LOOP RNA COMPLEX' PDB 1ZDK unspecified 'STRUCTURE OF BACTERIOPHAGE COAT PROTEIN-LOOP RNA COMPLEX' PDB 2BQ5 unspecified 'MS2 (N87AE89K MUTANT) - RNA HAIRPIN COMPLEX' PDB 2BS0 unspecified 'MS2 (N87AE89K MUTANT) - VARIANT QBETA RNA HAIRPIN COMPLEX' PDB 2BS1 unspecified 'MS2 (N87AE89K MUTANT) - QBETA RNA HAIRPIN COMPLEX' PDB 2BU1 unspecified 'MS2-RNA HAIRPIN (5BRU -5) COMPLEX' PDB 2C4Q unspecified 'MS2-RNA HAIRPIN (2ONE -5) COMPLEX' PDB 2C4Y unspecified 'MS2-RNA HAIRPIN (2THIOURACIL-5) COMPLEX' PDB 2C4Z unspecified 'MS2-RNA HAIRPIN (2SU -5-6) COMPLEX' PDB 2C50 unspecified 'MS2-RNA HAIRPIN (A -5) COMPLEX' PDB 2C51 unspecified 'MS2-RNA HAIRPIN (G -5) COMPLEX' PDB 2MS2 unspecified 'MS2 VIRUS (BACTERIOPHAGE)' PDB 5MSF unspecified 'F5 APTAMER MS2 COAT PROTEIN COMPLEX' PDB 6MSF unspecified 'F6 APTAMER MS2 COAT PROTEIN COMPLEX' PDB 7MSF unspecified 'F7 APTAMER MS2 COAT PROTEIN COMPLEX' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2BNY _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2005-04-06 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Horn, W.T.' 1 'Tars, K.' 2 'Grahn, E.' 3 'Helgstrand, C.' 4 'Baron, A.J.' 5 'Lago, H.' 6 'Adams, C.J.' 7 'Peabody, D.S.' 8 'Phillips, S.E.V.' 9 'Stonehouse, N.J.' 10 'Liljas, L.' 11 'Stockley, P.G.' 12 # _citation.id primary _citation.title 'Structural Basis of RNA Binding Discrimination between Bacteriophages Qbeta and MS2.' _citation.journal_abbrev Structure _citation.journal_volume 14 _citation.page_first 487 _citation.page_last ? _citation.year 2006 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16531233 _citation.pdbx_database_id_DOI 10.1016/J.STR.2005.12.006 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Horn, W.T.' 1 ? primary 'Tars, K.' 2 ? primary 'Grahn, E.' 3 ? primary 'Helgstrand, C.' 4 ? primary 'Baron, A.J.' 5 ? primary 'Lago, H.' 6 ? primary 'Adams, C.J.' 7 ? primary 'Peabody, D.S.' 8 ? primary 'Phillips, S.E.V.' 9 ? primary 'Stonehouse, N.J.' 10 ? primary 'Liljas, L.' 11 ? primary 'Stockley, P.G.' 12 ? # _cell.entry_id 2BNY _cell.length_a 288.000 _cell.length_b 288.000 _cell.length_c 653.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 540 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BNY _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'MS2 COAT PROTEIN' 13695.438 3 ? YES ? ? 2 polymer nat ;5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *UP*AP*CP*CP*CP*AP*UP*GP*U)-3' ; 6062.657 2 ? ? ? ? 3 water nat water 18.015 85 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name 'MS2 HAIRPIN' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;ASNFTQFVLVDNGGTGDVTVAPSNFANGVAEWISSNSRSQAYKVTCSVRQSSAQNRKYTIKVEVPKVATQTVGGVELPVA AWRSYLAMELTIPIFATNSDCELIVKAMQGLLKDGNPIPSAIAANSGIY ; ;ASNFTQFVLVDNGGTGDVTVAPSNFANGVAEWISSNSRSQAYKVTCSVRQSSAQNRKYTIKVEVPKVATQTVGGVELPVA AWRSYLAMELTIPIFATNSDCELIVKAMQGLLKDGNPIPSAIAANSGIY ; A,B,C ? 2 polyribonucleotide no no ACAUGAGGAUUACCCAUGU ACAUGAGGAUUACCCAUGU R,S ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 SER n 1 3 ASN n 1 4 PHE n 1 5 THR n 1 6 GLN n 1 7 PHE n 1 8 VAL n 1 9 LEU n 1 10 VAL n 1 11 ASP n 1 12 ASN n 1 13 GLY n 1 14 GLY n 1 15 THR n 1 16 GLY n 1 17 ASP n 1 18 VAL n 1 19 THR n 1 20 VAL n 1 21 ALA n 1 22 PRO n 1 23 SER n 1 24 ASN n 1 25 PHE n 1 26 ALA n 1 27 ASN n 1 28 GLY n 1 29 VAL n 1 30 ALA n 1 31 GLU n 1 32 TRP n 1 33 ILE n 1 34 SER n 1 35 SER n 1 36 ASN n 1 37 SER n 1 38 ARG n 1 39 SER n 1 40 GLN n 1 41 ALA n 1 42 TYR n 1 43 LYS n 1 44 VAL n 1 45 THR n 1 46 CYS n 1 47 SER n 1 48 VAL n 1 49 ARG n 1 50 GLN n 1 51 SER n 1 52 SER n 1 53 ALA n 1 54 GLN n 1 55 ASN n 1 56 ARG n 1 57 LYS n 1 58 TYR n 1 59 THR n 1 60 ILE n 1 61 LYS n 1 62 VAL n 1 63 GLU n 1 64 VAL n 1 65 PRO n 1 66 LYS n 1 67 VAL n 1 68 ALA n 1 69 THR n 1 70 GLN n 1 71 THR n 1 72 VAL n 1 73 GLY n 1 74 GLY n 1 75 VAL n 1 76 GLU n 1 77 LEU n 1 78 PRO n 1 79 VAL n 1 80 ALA n 1 81 ALA n 1 82 TRP n 1 83 ARG n 1 84 SER n 1 85 TYR n 1 86 LEU n 1 87 ALA n 1 88 MET n 1 89 GLU n 1 90 LEU n 1 91 THR n 1 92 ILE n 1 93 PRO n 1 94 ILE n 1 95 PHE n 1 96 ALA n 1 97 THR n 1 98 ASN n 1 99 SER n 1 100 ASP n 1 101 CYS n 1 102 GLU n 1 103 LEU n 1 104 ILE n 1 105 VAL n 1 106 LYS n 1 107 ALA n 1 108 MET n 1 109 GLN n 1 110 GLY n 1 111 LEU n 1 112 LEU n 1 113 LYS n 1 114 ASP n 1 115 GLY n 1 116 ASN n 1 117 PRO n 1 118 ILE n 1 119 PRO n 1 120 SER n 1 121 ALA n 1 122 ILE n 1 123 ALA n 1 124 ALA n 1 125 ASN n 1 126 SER n 1 127 GLY n 1 128 ILE n 1 129 TYR n 2 1 A n 2 2 C n 2 3 A n 2 4 U n 2 5 G n 2 6 A n 2 7 G n 2 8 G n 2 9 A n 2 10 U n 2 11 U n 2 12 A n 2 13 C n 2 14 C n 2 15 C n 2 16 A n 2 17 U n 2 18 G n 2 19 U n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'ENTEROBACTERIO PHAGE MS2' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 12022 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _entity_src_nat.entity_id 2 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'ENTEROBACTERIO PHAGE MS2' _entity_src_nat.pdbx_ncbi_taxonomy_id 12022 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP COAT_BPMS2 1 ? ? P03612 ? 2 PDB 2BNY 2 ? ? 2BNY ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2BNY A 1 ? 129 ? P03612 1 ? 129 ? 1 129 2 1 2BNY B 1 ? 129 ? P03612 1 ? 129 ? 1 129 3 1 2BNY C 1 ? 129 ? P03612 1 ? 129 ? 1 129 4 2 2BNY R 1 ? 19 ? 2BNY 1 ? 19 ? 1 19 5 2 2BNY S 1 ? 19 ? 2BNY 1 ? 19 ? 1 19 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2BNY ALA A 87 ? UNP P03612 ASN 87 'engineered mutation' 87 1 2 2BNY ALA B 87 ? UNP P03612 ASN 87 'engineered mutation' 87 2 3 2BNY ALA C 87 ? UNP P03612 ASN 87 'engineered mutation' 87 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2BNY _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description NONE # _diffrn.id 1 _diffrn.ambient_temp 287 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2001-09-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'MAX II BEAMLINE I711' _diffrn_source.pdbx_synchrotron_site 'MAX II' _diffrn_source.pdbx_synchrotron_beamline I711 _diffrn_source.pdbx_wavelength 1.1 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2BNY _reflns.observed_criterion_sigma_I . _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.00 _reflns.d_resolution_high 3.00 _reflns.number_obs 102199 _reflns.number_all ? _reflns.percent_possible_obs 49.0 _reflns.pdbx_Rmerge_I_obs 0.13 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 1.5 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 3.00 _reflns_shell.d_res_low 3.05 _reflns_shell.percent_possible_all 14.0 _reflns_shell.Rmerge_I_obs 0.23 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 1.1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2BNY _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 102051 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 13249027.85 _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 27.96 _refine.ls_d_res_high 3.00 _refine.ls_percent_reflns_obs 49.3 _refine.ls_R_factor_obs 0.202 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.202 _refine.ls_R_factor_R_free 0.211 _refine.ls_R_factor_R_free_error 0.007 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 1.0 _refine.ls_number_reflns_R_free 979 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 46.6 _refine.aniso_B[1][1] 3.36 _refine.aniso_B[2][2] 3.36 _refine.aniso_B[3][3] -6.73 _refine.aniso_B[1][2] 5.99 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.265698 _refine.solvent_model_param_bsol 27.6639 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 2MS2' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 2BNY _refine_analyze.Luzzati_coordinate_error_obs 0.35 _refine_analyze.Luzzati_sigma_a_obs 0.46 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.37 _refine_analyze.Luzzati_sigma_a_free 0.51 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2886 _refine_hist.pdbx_number_atoms_nucleic_acid 590 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 85 _refine_hist.number_atoms_total 3561 _refine_hist.d_res_high 3.00 _refine_hist.d_res_low 27.96 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 25.5 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.93 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 3.00 _refine_ls_shell.d_res_low 3.05 _refine_ls_shell.number_reflns_R_work 1412 _refine_ls_shell.R_factor_R_work 0.307 _refine_ls_shell.percent_reflns_obs 14.0 _refine_ls_shell.R_factor_R_free 0.377 _refine_ls_shell.R_factor_R_free_error 0.079 _refine_ls_shell.percent_reflns_R_free 1.6 _refine_ls_shell.number_reflns_R_free 23 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 'X-RAY DIFFRACTION' 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 DNA-RNA_REP.PARAM ? 'X-RAY DIFFRACTION' 3 WATER_REP.PARAM ? # loop_ _struct_ncs_oper.id _struct_ncs_oper.code _struct_ncs_oper.details _struct_ncs_oper.matrix[1][1] _struct_ncs_oper.matrix[1][2] _struct_ncs_oper.matrix[1][3] _struct_ncs_oper.matrix[2][1] _struct_ncs_oper.matrix[2][2] _struct_ncs_oper.matrix[2][3] _struct_ncs_oper.matrix[3][1] _struct_ncs_oper.matrix[3][2] _struct_ncs_oper.matrix[3][3] _struct_ncs_oper.vector[1] _struct_ncs_oper.vector[2] _struct_ncs_oper.vector[3] 1 given ? 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 2 generate ? -0.000007 -0.934176 0.356813 -0.356827 0.333330 0.872672 -0.934180 -0.127331 -0.333324 0.00000 0.00000 0.00000 3 generate ? 0.809013 -0.110269 0.577340 -0.467093 0.475679 0.745350 -0.356826 -0.872687 0.333341 0.00000 0.00000 0.00000 4 generate ? 0.500003 -0.866020 -0.000003 -0.645495 -0.372676 -0.666658 0.577363 0.333334 -0.745361 0.00000 0.00000 0.00000 5 generate ? 0.499998 -0.645498 0.577338 -0.866031 -0.372681 0.333333 0.000004 -0.666675 -0.745351 0.00000 0.00000 0.00000 6 generate ? 0.309020 -0.755754 -0.577352 -0.755766 -0.563664 0.333336 -0.577350 0.333329 -0.745356 0.00000 0.00000 0.00000 7 generate ? 0.809022 -0.467080 -0.356818 -0.110259 0.475688 -0.872669 0.577360 0.745362 0.333326 0.00000 0.00000 0.00000 8 generate ? 0.809023 0.110276 -0.577347 -0.467084 -0.475684 -0.745347 -0.356817 0.872684 -0.333338 0.00000 0.00000 0.00000 9 generate ? 0.309005 -0.178418 0.934164 0.178413 0.975684 0.127318 -0.934180 0.127320 0.333344 0.00000 0.00000 0.00000 10 generate ? 0.809013 0.467090 0.356821 0.110270 0.475686 -0.872672 -0.577350 0.745363 0.333336 0.00000 0.00000 0.00000 # _struct.entry_id 2BNY _struct.title 'MS2 (N87A mutant) - RNA hairpin complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2BNY _struct_keywords.pdbx_keywords VIRUS _struct_keywords.text 'VIRUS, CAPSID, COMPLEX (CAPSID PROTEIN-RNA HAIRPIN), HAIRPIN, LEVIVIRUS, VIRUS/VIRAL PROTEIN/RNA, ICOSAHEDRAL VIRUS' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PHE A 25 ? VAL A 29 ? PHE A 25 VAL A 29 5 ? 5 HELX_P HELX_P2 2 THR A 97 ? LEU A 112 ? THR A 97 LEU A 112 1 ? 16 HELX_P HELX_P3 3 ASN A 116 ? ALA A 124 ? ASN A 116 ALA A 124 1 ? 9 HELX_P HELX_P4 4 PHE B 25 ? VAL B 29 ? PHE B 25 VAL B 29 5 ? 5 HELX_P HELX_P5 5 PRO B 78 ? ALA B 81 ? PRO B 78 ALA B 81 5 ? 4 HELX_P HELX_P6 6 THR B 97 ? LEU B 112 ? THR B 97 LEU B 112 1 ? 16 HELX_P HELX_P7 7 ASN B 116 ? ALA B 124 ? ASN B 116 ALA B 124 1 ? 9 HELX_P HELX_P8 8 SER C 37 ? ALA C 41 ? SER C 37 ALA C 41 5 ? 5 HELX_P HELX_P9 9 THR C 97 ? LYS C 113 ? THR C 97 LYS C 113 1 ? 17 HELX_P HELX_P10 10 ASN C 116 ? ALA C 124 ? ASN C 116 ALA C 124 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? D A 3 N1 ? ? ? 1_555 D U 17 N3 ? ? R A 3 R U 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? D A 3 N6 ? ? ? 1_555 D U 17 O4 ? ? R A 3 R U 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? D U 4 N3 ? ? ? 1_555 D A 16 N1 ? ? R U 4 R A 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? D U 4 O4 ? ? ? 1_555 D A 16 N6 ? ? R U 4 R A 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? D G 5 N1 ? ? ? 1_555 D C 15 N3 ? ? R G 5 R C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? D G 5 N2 ? ? ? 1_555 D C 15 O2 ? ? R G 5 R C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? D G 5 O6 ? ? ? 1_555 D C 15 N4 ? ? R G 5 R C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? D G 7 N1 ? ? ? 1_555 D C 14 N3 ? ? R G 7 R C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? D G 7 N2 ? ? ? 1_555 D C 14 O2 ? ? R G 7 R C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? D G 7 O6 ? ? ? 1_555 D C 14 N4 ? ? R G 7 R C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? D G 8 N1 ? ? ? 1_555 D C 13 N3 ? ? R G 8 R C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? D G 8 N2 ? ? ? 1_555 D C 13 O2 ? ? R G 8 R C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? D G 8 O6 ? ? ? 1_555 D C 13 N4 ? ? R G 8 R C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? E U 4 N3 ? ? ? 1_555 E A 16 N1 ? ? S U 4 S A 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? E U 4 O4 ? ? ? 1_555 E A 16 N6 ? ? S U 4 S A 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? E G 5 N1 ? ? ? 1_555 E C 15 N3 ? ? S G 5 S C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? E G 5 N2 ? ? ? 1_555 E C 15 O2 ? ? S G 5 S C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? E G 5 O6 ? ? ? 1_555 E C 15 N4 ? ? S G 5 S C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? E G 7 N2 ? ? ? 1_555 E C 14 O2 ? ? S G 7 S C 14 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog20 hydrog ? ? E G 8 N1 ? ? ? 1_555 E C 13 N3 ? ? S G 8 S C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? E G 8 N2 ? ? ? 1_555 E C 13 O2 ? ? S G 8 S C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? E G 8 O6 ? ? ? 1_555 E C 13 N4 ? ? S G 8 S C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LEU _struct_mon_prot_cis.label_seq_id 77 _struct_mon_prot_cis.label_asym_id B _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LEU _struct_mon_prot_cis.auth_seq_id 77 _struct_mon_prot_cis.auth_asym_id B _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 78 _struct_mon_prot_cis.pdbx_label_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 78 _struct_mon_prot_cis.pdbx_auth_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.20 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 12 ? CA ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AA 4 5 ? anti-parallel AA 5 6 ? anti-parallel AA 6 7 ? anti-parallel AA 7 8 ? anti-parallel AA 8 9 ? anti-parallel AA 9 10 ? anti-parallel AA 10 11 ? anti-parallel AA 11 12 ? anti-parallel CA 1 2 ? anti-parallel CA 2 3 ? anti-parallel CA 3 4 ? anti-parallel CA 4 5 ? anti-parallel CA 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 PHE A 7 ? VAL A 10 ? PHE A 7 VAL A 10 AA 2 VAL A 18 ? ASN A 24 ? VAL A 18 ASN A 24 AA 3 ALA A 30 ? ILE A 33 ? ALA A 30 ILE A 33 AA 4 LYS A 43 ? ARG A 49 ? LYS A 43 ARG A 49 AA 5 ASN A 55 ? VAL A 72 ? ASN A 55 VAL A 72 AA 6 VAL A 75 ? PRO A 93 ? VAL A 75 PRO A 93 AA 7 ARG B 83 ? PRO B 93 ? ARG B 83 PRO B 93 AA 8 ASN B 55 ? PRO B 65 ? ASN B 55 PRO B 65 AA 9 LYS B 43 ? SER B 52 ? LYS B 43 SER B 52 AA 10 ALA B 30 ? ILE B 33 ? ALA B 30 ILE B 33 AA 11 VAL B 18 ? ASN B 24 ? VAL B 18 ASN B 24 AA 12 PHE B 7 ? VAL B 10 ? PHE B 7 VAL B 10 CA 1 PHE C 7 ? VAL C 10 ? PHE C 7 VAL C 10 CA 2 VAL C 18 ? ASN C 24 ? VAL C 18 ASN C 24 CA 3 ALA C 30 ? SER C 34 ? ALA C 30 SER C 34 CA 4 LYS C 43 ? ARG C 49 ? LYS C 43 ARG C 49 CA 5 ASN C 55 ? VAL C 72 ? ASN C 55 VAL C 72 CA 6 VAL C 75 ? PRO C 93 ? VAL C 75 PRO C 93 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N VAL A 10 ? N VAL A 10 O VAL A 18 ? O VAL A 18 AA 2 3 N SER A 23 ? N SER A 23 O GLU A 31 ? O GLU A 31 AA 3 4 N TRP A 32 ? N TRP A 32 O VAL A 44 ? O VAL A 44 AA 4 5 N ARG A 49 ? N ARG A 49 O LYS A 57 ? O LYS A 57 AA 5 6 N VAL A 72 ? N VAL A 72 O VAL A 75 ? O VAL A 75 AA 6 7 N THR A 91 ? N THR A 91 O TYR B 85 ? O TYR B 85 AA 7 8 N ILE B 92 ? N ILE B 92 O ARG B 56 ? O ARG B 56 AA 8 9 N GLU B 63 ? N GLU B 63 O LYS B 43 ? O LYS B 43 AA 9 10 N CYS B 46 ? N CYS B 46 O ALA B 30 ? O ALA B 30 AA 10 11 N ILE B 33 ? N ILE B 33 O ALA B 21 ? O ALA B 21 AA 11 12 N VAL B 20 ? N VAL B 20 O PHE B 7 ? O PHE B 7 CA 1 2 N LEU C 9 ? N LEU C 9 O VAL C 18 ? O VAL C 18 CA 2 3 N SER C 23 ? N SER C 23 O GLU C 31 ? O GLU C 31 CA 3 4 N TRP C 32 ? N TRP C 32 O VAL C 44 ? O VAL C 44 CA 4 5 N ARG C 49 ? N ARG C 49 O LYS C 57 ? O LYS C 57 CA 5 6 N VAL C 72 ? N VAL C 72 O VAL C 75 ? O VAL C 75 # _database_PDB_matrix.entry_id 2BNY _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2BNY _atom_sites.fract_transf_matrix[1][1] 0.003472 _atom_sites.fract_transf_matrix[1][2] 0.002005 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.004009 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.001531 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 1 ALA ALA A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 ASN 3 3 3 ASN ASN A . n A 1 4 PHE 4 4 4 PHE PHE A . n A 1 5 THR 5 5 5 THR THR A . n A 1 6 GLN 6 6 6 GLN GLN A . n A 1 7 PHE 7 7 7 PHE PHE A . n A 1 8 VAL 8 8 8 VAL VAL A . n A 1 9 LEU 9 9 9 LEU LEU A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 ASP 11 11 11 ASP ASP A . n A 1 12 ASN 12 12 12 ASN ASN A . n A 1 13 GLY 13 13 13 GLY GLY A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 THR 15 15 15 THR THR A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 ASP 17 17 17 ASP ASP A . n A 1 18 VAL 18 18 18 VAL VAL A . n A 1 19 THR 19 19 19 THR THR A . n A 1 20 VAL 20 20 20 VAL VAL A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 PRO 22 22 22 PRO PRO A . n A 1 23 SER 23 23 23 SER SER A . n A 1 24 ASN 24 24 24 ASN ASN A . n A 1 25 PHE 25 25 25 PHE PHE A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 ASN 27 27 27 ASN ASN A . n A 1 28 GLY 28 28 28 GLY GLY A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 ALA 30 30 30 ALA ALA A . n A 1 31 GLU 31 31 31 GLU GLU A . n A 1 32 TRP 32 32 32 TRP TRP A . n A 1 33 ILE 33 33 33 ILE ILE A . n A 1 34 SER 34 34 34 SER SER A . n A 1 35 SER 35 35 35 SER SER A . n A 1 36 ASN 36 36 36 ASN ASN A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 ARG 38 38 38 ARG ARG A . n A 1 39 SER 39 39 39 SER SER A . n A 1 40 GLN 40 40 40 GLN GLN A . n A 1 41 ALA 41 41 41 ALA ALA A . n A 1 42 TYR 42 42 42 TYR TYR A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 VAL 44 44 44 VAL VAL A . n A 1 45 THR 45 45 45 THR THR A . n A 1 46 CYS 46 46 46 CYS CYS A . n A 1 47 SER 47 47 47 SER SER A . n A 1 48 VAL 48 48 48 VAL VAL A . n A 1 49 ARG 49 49 49 ARG ARG A . n A 1 50 GLN 50 50 50 GLN GLN A . n A 1 51 SER 51 51 51 SER SER A . n A 1 52 SER 52 52 52 SER SER A . n A 1 53 ALA 53 53 53 ALA ALA A . n A 1 54 GLN 54 54 54 GLN GLN A . n A 1 55 ASN 55 55 55 ASN ASN A . n A 1 56 ARG 56 56 56 ARG ARG A . n A 1 57 LYS 57 57 57 LYS LYS A . n A 1 58 TYR 58 58 58 TYR TYR A . n A 1 59 THR 59 59 59 THR THR A . n A 1 60 ILE 60 60 60 ILE ILE A . n A 1 61 LYS 61 61 61 LYS LYS A . n A 1 62 VAL 62 62 62 VAL VAL A . n A 1 63 GLU 63 63 63 GLU GLU A . n A 1 64 VAL 64 64 64 VAL VAL A . n A 1 65 PRO 65 65 65 PRO PRO A . n A 1 66 LYS 66 66 66 LYS LYS A . n A 1 67 VAL 67 67 67 VAL VAL A . n A 1 68 ALA 68 68 68 ALA ALA A . n A 1 69 THR 69 69 69 THR THR A . n A 1 70 GLN 70 70 70 GLN GLN A . n A 1 71 THR 71 71 71 THR THR A . n A 1 72 VAL 72 72 72 VAL VAL A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 GLY 74 74 74 GLY GLY A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 GLU 76 76 76 GLU GLU A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 PRO 78 78 78 PRO PRO A . n A 1 79 VAL 79 79 79 VAL VAL A . n A 1 80 ALA 80 80 80 ALA ALA A . n A 1 81 ALA 81 81 81 ALA ALA A . n A 1 82 TRP 82 82 82 TRP TRP A . n A 1 83 ARG 83 83 83 ARG ARG A . n A 1 84 SER 84 84 84 SER SER A . n A 1 85 TYR 85 85 85 TYR TYR A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 ALA 87 87 87 ALA ALA A . n A 1 88 MET 88 88 88 MET MET A . n A 1 89 GLU 89 89 89 GLU GLU A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 THR 91 91 91 THR THR A . n A 1 92 ILE 92 92 92 ILE ILE A . n A 1 93 PRO 93 93 93 PRO PRO A . n A 1 94 ILE 94 94 94 ILE ILE A . n A 1 95 PHE 95 95 95 PHE PHE A . n A 1 96 ALA 96 96 96 ALA ALA A . n A 1 97 THR 97 97 97 THR THR A . n A 1 98 ASN 98 98 98 ASN ASN A . n A 1 99 SER 99 99 99 SER SER A . n A 1 100 ASP 100 100 100 ASP ASP A . n A 1 101 CYS 101 101 101 CYS CYS A . n A 1 102 GLU 102 102 102 GLU GLU A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 ILE 104 104 104 ILE ILE A . n A 1 105 VAL 105 105 105 VAL VAL A . n A 1 106 LYS 106 106 106 LYS LYS A . n A 1 107 ALA 107 107 107 ALA ALA A . n A 1 108 MET 108 108 108 MET MET A . n A 1 109 GLN 109 109 109 GLN GLN A . n A 1 110 GLY 110 110 110 GLY GLY A . n A 1 111 LEU 111 111 111 LEU LEU A . n A 1 112 LEU 112 112 112 LEU LEU A . n A 1 113 LYS 113 113 113 LYS LYS A . n A 1 114 ASP 114 114 114 ASP ASP A . n A 1 115 GLY 115 115 115 GLY GLY A . n A 1 116 ASN 116 116 116 ASN ASN A . n A 1 117 PRO 117 117 117 PRO PRO A . n A 1 118 ILE 118 118 118 ILE ILE A . n A 1 119 PRO 119 119 119 PRO PRO A . n A 1 120 SER 120 120 120 SER SER A . n A 1 121 ALA 121 121 121 ALA ALA A . n A 1 122 ILE 122 122 122 ILE ILE A . n A 1 123 ALA 123 123 123 ALA ALA A . n A 1 124 ALA 124 124 124 ALA ALA A . n A 1 125 ASN 125 125 125 ASN ASN A . n A 1 126 SER 126 126 126 SER SER A . n A 1 127 GLY 127 127 127 GLY GLY A . n A 1 128 ILE 128 128 128 ILE ILE A . n A 1 129 TYR 129 129 129 TYR TYR A . n B 1 1 ALA 1 1 1 ALA ALA B . n B 1 2 SER 2 2 2 SER SER B . n B 1 3 ASN 3 3 3 ASN ASN B . n B 1 4 PHE 4 4 4 PHE PHE B . n B 1 5 THR 5 5 5 THR THR B . n B 1 6 GLN 6 6 6 GLN GLN B . n B 1 7 PHE 7 7 7 PHE PHE B . n B 1 8 VAL 8 8 8 VAL VAL B . n B 1 9 LEU 9 9 9 LEU LEU B . n B 1 10 VAL 10 10 10 VAL VAL B . n B 1 11 ASP 11 11 11 ASP ASP B . n B 1 12 ASN 12 12 12 ASN ASN B . n B 1 13 GLY 13 13 13 GLY GLY B . n B 1 14 GLY 14 14 14 GLY GLY B . n B 1 15 THR 15 15 15 THR THR B . n B 1 16 GLY 16 16 16 GLY GLY B . n B 1 17 ASP 17 17 17 ASP ASP B . n B 1 18 VAL 18 18 18 VAL VAL B . n B 1 19 THR 19 19 19 THR THR B . n B 1 20 VAL 20 20 20 VAL VAL B . n B 1 21 ALA 21 21 21 ALA ALA B . n B 1 22 PRO 22 22 22 PRO PRO B . n B 1 23 SER 23 23 23 SER SER B . n B 1 24 ASN 24 24 24 ASN ASN B . n B 1 25 PHE 25 25 25 PHE PHE B . n B 1 26 ALA 26 26 26 ALA ALA B . n B 1 27 ASN 27 27 27 ASN ASN B . n B 1 28 GLY 28 28 28 GLY GLY B . n B 1 29 VAL 29 29 29 VAL VAL B . n B 1 30 ALA 30 30 30 ALA ALA B . n B 1 31 GLU 31 31 31 GLU GLU B . n B 1 32 TRP 32 32 32 TRP TRP B . n B 1 33 ILE 33 33 33 ILE ILE B . n B 1 34 SER 34 34 34 SER SER B . n B 1 35 SER 35 35 35 SER SER B . n B 1 36 ASN 36 36 36 ASN ASN B . n B 1 37 SER 37 37 37 SER SER B . n B 1 38 ARG 38 38 38 ARG ARG B . n B 1 39 SER 39 39 39 SER SER B . n B 1 40 GLN 40 40 40 GLN GLN B . n B 1 41 ALA 41 41 41 ALA ALA B . n B 1 42 TYR 42 42 42 TYR TYR B . n B 1 43 LYS 43 43 43 LYS LYS B . n B 1 44 VAL 44 44 44 VAL VAL B . n B 1 45 THR 45 45 45 THR THR B . n B 1 46 CYS 46 46 46 CYS CYS B . n B 1 47 SER 47 47 47 SER SER B . n B 1 48 VAL 48 48 48 VAL VAL B . n B 1 49 ARG 49 49 49 ARG ARG B . n B 1 50 GLN 50 50 50 GLN GLN B . n B 1 51 SER 51 51 51 SER SER B . n B 1 52 SER 52 52 52 SER SER B . n B 1 53 ALA 53 53 53 ALA ALA B . n B 1 54 GLN 54 54 54 GLN GLN B . n B 1 55 ASN 55 55 55 ASN ASN B . n B 1 56 ARG 56 56 56 ARG ARG B . n B 1 57 LYS 57 57 57 LYS LYS B . n B 1 58 TYR 58 58 58 TYR TYR B . n B 1 59 THR 59 59 59 THR THR B . n B 1 60 ILE 60 60 60 ILE ILE B . n B 1 61 LYS 61 61 61 LYS LYS B . n B 1 62 VAL 62 62 62 VAL VAL B . n B 1 63 GLU 63 63 63 GLU GLU B . n B 1 64 VAL 64 64 64 VAL VAL B . n B 1 65 PRO 65 65 65 PRO PRO B . n B 1 66 LYS 66 66 66 LYS LYS B . n B 1 67 VAL 67 67 67 VAL VAL B . n B 1 68 ALA 68 68 68 ALA ALA B . n B 1 69 THR 69 69 69 THR THR B . n B 1 70 GLN 70 70 70 GLN GLN B . n B 1 71 THR 71 71 71 THR THR B . n B 1 72 VAL 72 72 72 VAL VAL B . n B 1 73 GLY 73 73 73 GLY GLY B . n B 1 74 GLY 74 74 74 GLY GLY B . n B 1 75 VAL 75 75 75 VAL VAL B . n B 1 76 GLU 76 76 76 GLU GLU B . n B 1 77 LEU 77 77 77 LEU LEU B . n B 1 78 PRO 78 78 78 PRO PRO B . n B 1 79 VAL 79 79 79 VAL VAL B . n B 1 80 ALA 80 80 80 ALA ALA B . n B 1 81 ALA 81 81 81 ALA ALA B . n B 1 82 TRP 82 82 82 TRP TRP B . n B 1 83 ARG 83 83 83 ARG ARG B . n B 1 84 SER 84 84 84 SER SER B . n B 1 85 TYR 85 85 85 TYR TYR B . n B 1 86 LEU 86 86 86 LEU LEU B . n B 1 87 ALA 87 87 87 ALA ALA B . n B 1 88 MET 88 88 88 MET MET B . n B 1 89 GLU 89 89 89 GLU GLU B . n B 1 90 LEU 90 90 90 LEU LEU B . n B 1 91 THR 91 91 91 THR THR B . n B 1 92 ILE 92 92 92 ILE ILE B . n B 1 93 PRO 93 93 93 PRO PRO B . n B 1 94 ILE 94 94 94 ILE ILE B . n B 1 95 PHE 95 95 95 PHE PHE B . n B 1 96 ALA 96 96 96 ALA ALA B . n B 1 97 THR 97 97 97 THR THR B . n B 1 98 ASN 98 98 98 ASN ASN B . n B 1 99 SER 99 99 99 SER SER B . n B 1 100 ASP 100 100 100 ASP ASP B . n B 1 101 CYS 101 101 101 CYS CYS B . n B 1 102 GLU 102 102 102 GLU GLU B . n B 1 103 LEU 103 103 103 LEU LEU B . n B 1 104 ILE 104 104 104 ILE ILE B . n B 1 105 VAL 105 105 105 VAL VAL B . n B 1 106 LYS 106 106 106 LYS LYS B . n B 1 107 ALA 107 107 107 ALA ALA B . n B 1 108 MET 108 108 108 MET MET B . n B 1 109 GLN 109 109 109 GLN GLN B . n B 1 110 GLY 110 110 110 GLY GLY B . n B 1 111 LEU 111 111 111 LEU LEU B . n B 1 112 LEU 112 112 112 LEU LEU B . n B 1 113 LYS 113 113 113 LYS LYS B . n B 1 114 ASP 114 114 114 ASP ASP B . n B 1 115 GLY 115 115 115 GLY GLY B . n B 1 116 ASN 116 116 116 ASN ASN B . n B 1 117 PRO 117 117 117 PRO PRO B . n B 1 118 ILE 118 118 118 ILE ILE B . n B 1 119 PRO 119 119 119 PRO PRO B . n B 1 120 SER 120 120 120 SER SER B . n B 1 121 ALA 121 121 121 ALA ALA B . n B 1 122 ILE 122 122 122 ILE ILE B . n B 1 123 ALA 123 123 123 ALA ALA B . n B 1 124 ALA 124 124 124 ALA ALA B . n B 1 125 ASN 125 125 125 ASN ASN B . n B 1 126 SER 126 126 126 SER SER B . n B 1 127 GLY 127 127 127 GLY GLY B . n B 1 128 ILE 128 128 128 ILE ILE B . n B 1 129 TYR 129 129 129 TYR TYR B . n C 1 1 ALA 1 1 1 ALA ALA C . n C 1 2 SER 2 2 2 SER SER C . n C 1 3 ASN 3 3 3 ASN ASN C . n C 1 4 PHE 4 4 4 PHE PHE C . n C 1 5 THR 5 5 5 THR THR C . n C 1 6 GLN 6 6 6 GLN GLN C . n C 1 7 PHE 7 7 7 PHE PHE C . n C 1 8 VAL 8 8 8 VAL VAL C . n C 1 9 LEU 9 9 9 LEU LEU C . n C 1 10 VAL 10 10 10 VAL VAL C . n C 1 11 ASP 11 11 11 ASP ASP C . n C 1 12 ASN 12 12 12 ASN ASN C . n C 1 13 GLY 13 13 13 GLY GLY C . n C 1 14 GLY 14 14 14 GLY GLY C . n C 1 15 THR 15 15 15 THR THR C . n C 1 16 GLY 16 16 16 GLY GLY C . n C 1 17 ASP 17 17 17 ASP ASP C . n C 1 18 VAL 18 18 18 VAL VAL C . n C 1 19 THR 19 19 19 THR THR C . n C 1 20 VAL 20 20 20 VAL VAL C . n C 1 21 ALA 21 21 21 ALA ALA C . n C 1 22 PRO 22 22 22 PRO PRO C . n C 1 23 SER 23 23 23 SER SER C . n C 1 24 ASN 24 24 24 ASN ASN C . n C 1 25 PHE 25 25 25 PHE PHE C . n C 1 26 ALA 26 26 26 ALA ALA C . n C 1 27 ASN 27 27 27 ASN ASN C . n C 1 28 GLY 28 28 28 GLY GLY C . n C 1 29 VAL 29 29 29 VAL VAL C . n C 1 30 ALA 30 30 30 ALA ALA C . n C 1 31 GLU 31 31 31 GLU GLU C . n C 1 32 TRP 32 32 32 TRP TRP C . n C 1 33 ILE 33 33 33 ILE ILE C . n C 1 34 SER 34 34 34 SER SER C . n C 1 35 SER 35 35 35 SER SER C . n C 1 36 ASN 36 36 36 ASN ASN C . n C 1 37 SER 37 37 37 SER SER C . n C 1 38 ARG 38 38 38 ARG ARG C . n C 1 39 SER 39 39 39 SER SER C . n C 1 40 GLN 40 40 40 GLN GLN C . n C 1 41 ALA 41 41 41 ALA ALA C . n C 1 42 TYR 42 42 42 TYR TYR C . n C 1 43 LYS 43 43 43 LYS LYS C . n C 1 44 VAL 44 44 44 VAL VAL C . n C 1 45 THR 45 45 45 THR THR C . n C 1 46 CYS 46 46 46 CYS CYS C . n C 1 47 SER 47 47 47 SER SER C . n C 1 48 VAL 48 48 48 VAL VAL C . n C 1 49 ARG 49 49 49 ARG ARG C . n C 1 50 GLN 50 50 50 GLN GLN C . n C 1 51 SER 51 51 51 SER SER C . n C 1 52 SER 52 52 52 SER SER C . n C 1 53 ALA 53 53 53 ALA ALA C . n C 1 54 GLN 54 54 54 GLN GLN C . n C 1 55 ASN 55 55 55 ASN ASN C . n C 1 56 ARG 56 56 56 ARG ARG C . n C 1 57 LYS 57 57 57 LYS LYS C . n C 1 58 TYR 58 58 58 TYR TYR C . n C 1 59 THR 59 59 59 THR THR C . n C 1 60 ILE 60 60 60 ILE ILE C . n C 1 61 LYS 61 61 61 LYS LYS C . n C 1 62 VAL 62 62 62 VAL VAL C . n C 1 63 GLU 63 63 63 GLU GLU C . n C 1 64 VAL 64 64 64 VAL VAL C . n C 1 65 PRO 65 65 65 PRO PRO C . n C 1 66 LYS 66 66 66 LYS LYS C . n C 1 67 VAL 67 67 67 VAL VAL C . n C 1 68 ALA 68 68 68 ALA ALA C . n C 1 69 THR 69 69 69 THR THR C . n C 1 70 GLN 70 70 70 GLN GLN C . n C 1 71 THR 71 71 71 THR THR C . n C 1 72 VAL 72 72 72 VAL VAL C . n C 1 73 GLY 73 73 73 GLY GLY C . n C 1 74 GLY 74 74 74 GLY GLY C . n C 1 75 VAL 75 75 75 VAL VAL C . n C 1 76 GLU 76 76 76 GLU GLU C . n C 1 77 LEU 77 77 77 LEU LEU C . n C 1 78 PRO 78 78 78 PRO PRO C . n C 1 79 VAL 79 79 79 VAL VAL C . n C 1 80 ALA 80 80 80 ALA ALA C . n C 1 81 ALA 81 81 81 ALA ALA C . n C 1 82 TRP 82 82 82 TRP TRP C . n C 1 83 ARG 83 83 83 ARG ARG C . n C 1 84 SER 84 84 84 SER SER C . n C 1 85 TYR 85 85 85 TYR TYR C . n C 1 86 LEU 86 86 86 LEU LEU C . n C 1 87 ALA 87 87 87 ALA ALA C . n C 1 88 MET 88 88 88 MET MET C . n C 1 89 GLU 89 89 89 GLU GLU C . n C 1 90 LEU 90 90 90 LEU LEU C . n C 1 91 THR 91 91 91 THR THR C . n C 1 92 ILE 92 92 92 ILE ILE C . n C 1 93 PRO 93 93 93 PRO PRO C . n C 1 94 ILE 94 94 94 ILE ILE C . n C 1 95 PHE 95 95 95 PHE PHE C . n C 1 96 ALA 96 96 96 ALA ALA C . n C 1 97 THR 97 97 97 THR THR C . n C 1 98 ASN 98 98 98 ASN ASN C . n C 1 99 SER 99 99 99 SER SER C . n C 1 100 ASP 100 100 100 ASP ASP C . n C 1 101 CYS 101 101 101 CYS CYS C . n C 1 102 GLU 102 102 102 GLU GLU C . n C 1 103 LEU 103 103 103 LEU LEU C . n C 1 104 ILE 104 104 104 ILE ILE C . n C 1 105 VAL 105 105 105 VAL VAL C . n C 1 106 LYS 106 106 106 LYS LYS C . n C 1 107 ALA 107 107 107 ALA ALA C . n C 1 108 MET 108 108 108 MET MET C . n C 1 109 GLN 109 109 109 GLN GLN C . n C 1 110 GLY 110 110 110 GLY GLY C . n C 1 111 LEU 111 111 111 LEU LEU C . n C 1 112 LEU 112 112 112 LEU LEU C . n C 1 113 LYS 113 113 113 LYS LYS C . n C 1 114 ASP 114 114 114 ASP ASP C . n C 1 115 GLY 115 115 115 GLY GLY C . n C 1 116 ASN 116 116 116 ASN ASN C . n C 1 117 PRO 117 117 117 PRO PRO C . n C 1 118 ILE 118 118 118 ILE ILE C . n C 1 119 PRO 119 119 119 PRO PRO C . n C 1 120 SER 120 120 120 SER SER C . n C 1 121 ALA 121 121 121 ALA ALA C . n C 1 122 ILE 122 122 122 ILE ILE C . n C 1 123 ALA 123 123 123 ALA ALA C . n C 1 124 ALA 124 124 124 ALA ALA C . n C 1 125 ASN 125 125 125 ASN ASN C . n C 1 126 SER 126 126 126 SER SER C . n C 1 127 GLY 127 127 127 GLY GLY C . n C 1 128 ILE 128 128 128 ILE ILE C . n C 1 129 TYR 129 129 129 TYR TYR C . n D 2 1 A 1 1 ? ? ? R . n D 2 2 C 2 2 ? ? ? R . n D 2 3 A 3 3 3 A A R . n D 2 4 U 4 4 4 U U R . n D 2 5 G 5 5 5 G G R . n D 2 6 A 6 6 6 A A R . n D 2 7 G 7 7 7 G G R . n D 2 8 G 8 8 8 G G R . n D 2 9 A 9 9 9 A A R . n D 2 10 U 10 10 10 U U R . n D 2 11 U 11 11 11 U U R . n D 2 12 A 12 12 12 A A R . n D 2 13 C 13 13 13 C C R . n D 2 14 C 14 14 14 C C R . n D 2 15 C 15 15 15 C C R . n D 2 16 A 16 16 16 A A R . n D 2 17 U 17 17 17 U U R . n D 2 18 G 18 18 ? ? ? R . n D 2 19 U 19 19 ? ? ? R . n E 2 1 A 1 1 ? ? ? S . n E 2 2 C 2 2 ? ? ? S . n E 2 3 A 3 3 ? ? ? S . n E 2 4 U 4 4 4 U U S . n E 2 5 G 5 5 5 G G S . n E 2 6 A 6 6 6 A A S . n E 2 7 G 7 7 7 G G S . n E 2 8 G 8 8 8 G G S . n E 2 9 A 9 9 9 A A S . n E 2 10 U 10 10 10 U U S . n E 2 11 U 11 11 11 U U S . n E 2 12 A 12 12 12 A A S . n E 2 13 C 13 13 13 C C S . n E 2 14 C 14 14 14 C C S . n E 2 15 C 15 15 15 C C S . n E 2 16 A 16 16 16 A A S . n E 2 17 U 17 17 ? ? ? S . n E 2 18 G 18 18 ? ? ? S . n E 2 19 U 19 19 ? ? ? S . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code F 3 HOH 1 2001 2001 HOH HOH A . F 3 HOH 2 2002 2002 HOH HOH A . F 3 HOH 3 2003 2003 HOH HOH A . F 3 HOH 4 2004 2004 HOH HOH A . F 3 HOH 5 2005 2005 HOH HOH A . F 3 HOH 6 2006 2006 HOH HOH A . F 3 HOH 7 2007 2007 HOH HOH A . F 3 HOH 8 2008 2008 HOH HOH A . F 3 HOH 9 2009 2009 HOH HOH A . F 3 HOH 10 2010 2010 HOH HOH A . F 3 HOH 11 2011 2011 HOH HOH A . F 3 HOH 12 2012 2012 HOH HOH A . F 3 HOH 13 2013 2013 HOH HOH A . F 3 HOH 14 2014 2014 HOH HOH A . F 3 HOH 15 2015 2015 HOH HOH A . F 3 HOH 16 2016 2016 HOH HOH A . F 3 HOH 17 2017 2017 HOH HOH A . F 3 HOH 18 2018 2018 HOH HOH A . F 3 HOH 19 2019 2019 HOH HOH A . G 3 HOH 1 2001 2001 HOH HOH B . G 3 HOH 2 2002 2002 HOH HOH B . G 3 HOH 3 2003 2003 HOH HOH B . G 3 HOH 4 2004 2004 HOH HOH B . G 3 HOH 5 2005 2005 HOH HOH B . G 3 HOH 6 2006 2006 HOH HOH B . G 3 HOH 7 2007 2007 HOH HOH B . G 3 HOH 8 2008 2008 HOH HOH B . G 3 HOH 9 2009 2009 HOH HOH B . G 3 HOH 10 2010 2010 HOH HOH B . G 3 HOH 11 2011 2011 HOH HOH B . G 3 HOH 12 2012 2012 HOH HOH B . G 3 HOH 13 2013 2013 HOH HOH B . G 3 HOH 14 2014 2014 HOH HOH B . G 3 HOH 15 2015 2015 HOH HOH B . G 3 HOH 16 2016 2016 HOH HOH B . G 3 HOH 17 2017 2017 HOH HOH B . G 3 HOH 18 2018 2018 HOH HOH B . G 3 HOH 19 2019 2019 HOH HOH B . G 3 HOH 20 2020 2020 HOH HOH B . G 3 HOH 21 2021 2021 HOH HOH B . G 3 HOH 22 2022 2022 HOH HOH B . G 3 HOH 23 2023 2023 HOH HOH B . G 3 HOH 24 2024 2024 HOH HOH B . G 3 HOH 25 2025 2025 HOH HOH B . G 3 HOH 26 2026 2026 HOH HOH B . G 3 HOH 27 2027 2027 HOH HOH B . G 3 HOH 28 2028 2028 HOH HOH B . G 3 HOH 29 2029 2029 HOH HOH B . G 3 HOH 30 2030 2030 HOH HOH B . G 3 HOH 31 2031 2031 HOH HOH B . G 3 HOH 32 2032 2032 HOH HOH B . G 3 HOH 33 2033 2033 HOH HOH B . G 3 HOH 34 2034 2034 HOH HOH B . G 3 HOH 35 2035 2035 HOH HOH B . G 3 HOH 36 2036 2036 HOH HOH B . G 3 HOH 37 2037 2037 HOH HOH B . G 3 HOH 38 2038 2038 HOH HOH B . G 3 HOH 39 2039 2039 HOH HOH B . H 3 HOH 1 2001 2001 HOH HOH C . H 3 HOH 2 2002 2002 HOH HOH C . H 3 HOH 3 2003 2003 HOH HOH C . H 3 HOH 4 2004 2004 HOH HOH C . H 3 HOH 5 2005 2005 HOH HOH C . H 3 HOH 6 2006 2006 HOH HOH C . H 3 HOH 7 2007 2007 HOH HOH C . H 3 HOH 8 2008 2008 HOH HOH C . H 3 HOH 9 2009 2009 HOH HOH C . H 3 HOH 10 2010 2010 HOH HOH C . H 3 HOH 11 2011 2011 HOH HOH C . H 3 HOH 12 2012 2012 HOH HOH C . H 3 HOH 13 2013 2013 HOH HOH C . H 3 HOH 14 2014 2014 HOH HOH C . H 3 HOH 15 2015 2015 HOH HOH C . H 3 HOH 16 2016 2016 HOH HOH C . H 3 HOH 17 2017 2017 HOH HOH C . H 3 HOH 18 2018 2018 HOH HOH C . H 3 HOH 19 2019 2019 HOH HOH C . H 3 HOH 20 2020 2020 HOH HOH C . H 3 HOH 21 2021 2021 HOH HOH C . H 3 HOH 22 2022 2022 HOH HOH C . H 3 HOH 23 2023 2023 HOH HOH C . H 3 HOH 24 2024 2024 HOH HOH C . H 3 HOH 25 2025 2025 HOH HOH C . H 3 HOH 26 2026 2026 HOH HOH C . I 3 HOH 1 2001 2001 HOH HOH R . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'complete icosahedral assembly' ? 300-MERIC 300 2 'icosahedral asymmetric unit' ? pentameric 5 3 'icosahedral pentamer' ? 25-meric 25 4 'icosahedral 23 hexamer' ? 30-meric 30 5 'icosahedral asymmetric unit, std point frame' ? pentameric 5 6 'crystal asymmetric unit, crystal frame' ? 50-meric 50 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-60)' A,B,C,D,E,F,G,H,I 2 1 A,B,C,D,E,F,G,H,I 3 '(1-5)' A,B,C,D,E,F,G,H,I 4 '(1,2,6,10,23,24)' A,B,C,D,E,F,G,H,I 5 P A,B,C,D,E,F,G,H,I 6 '(X0)(1-10)' A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? 0.50000000 -0.86602540 0.00000000 0.00000 -0.30901699 -0.17841104 0.93417236 0.00000 -0.80901699 -0.46708618 -0.35682209 0.00000 X0 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 1 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 2 'point symmetry operation' ? ? 0.80901699 0.11026409 -0.57735027 0.00000 0.46708618 0.47568366 0.74535599 0.00000 0.35682209 -0.87267800 0.33333333 0.00000 3 'point symmetry operation' ? ? 0.50000000 0.64549722 -0.57735027 0.00000 0.86602540 -0.37267800 0.33333333 0.00000 0.00000000 -0.66666667 -0.74535599 0.00000 4 'point symmetry operation' ? ? 0.50000000 0.86602540 0.00000000 0.00000 0.64549722 -0.37267800 -0.66666667 0.00000 -0.57735027 0.33333333 -0.74535599 0.00000 5 'point symmetry operation' ? ? 0.80901699 0.46708618 0.35682209 0.00000 0.11026409 0.47568366 -0.87267800 0.00000 -0.57735027 0.74535599 0.33333333 0.00000 6 'point symmetry operation' ? ? 0.30901699 0.75576131 0.57735027 0.00000 0.75576131 -0.56366100 0.33333333 0.00000 0.57735027 0.33333333 -0.74535599 0.00000 7 'point symmetry operation' ? ? 0.80901699 -0.11026409 0.57735027 0.00000 0.46708618 -0.47568366 -0.74535599 0.00000 0.35682209 0.87267800 -0.33333333 0.00000 8 'point symmetry operation' ? ? 0.80901699 -0.46708618 -0.35682209 0.00000 -0.11026409 0.47568366 -0.87267800 0.00000 0.57735027 0.74535599 0.33333333 0.00000 9 'point symmetry operation' ? ? 0.30901699 0.17841104 -0.93417236 0.00000 -0.17841104 0.97568366 0.12732200 0.00000 0.93417236 0.12732200 0.33333333 0.00000 10 'point symmetry operation' ? ? 0.00000000 0.93417236 -0.35682209 0.00000 0.35682209 0.33333333 0.87267800 0.00000 0.93417236 -0.12732200 -0.33333333 0.00000 11 'point symmetry operation' ? ? -0.80901699 0.11026409 -0.57735027 0.00000 0.11026409 -0.93633900 -0.33333333 0.00000 -0.57735027 -0.33333333 0.74535599 0.00000 12 'point symmetry operation' ? ? -0.80901699 0.46708618 0.35682209 0.00000 -0.46708618 -0.14235033 -0.87267800 0.00000 -0.35682209 -0.87267800 0.33333333 0.00000 13 'point symmetry operation' ? ? -0.30901699 -0.17841104 0.93417236 0.00000 -0.75576131 0.64235033 -0.12732200 0.00000 -0.57735027 -0.74535599 -0.33333333 0.00000 14 'point symmetry operation' ? ? 0.00000000 -0.93417236 0.35682209 0.00000 -0.35682209 0.33333333 0.87267800 0.00000 -0.93417236 -0.12732200 -0.33333333 0.00000 15 'point symmetry operation' ? ? -0.30901699 -0.75576131 -0.57735027 0.00000 0.17841104 -0.64235033 0.74535599 0.00000 -0.93417236 0.12732200 0.33333333 0.00000 16 'point symmetry operation' ? ? -0.50000000 -0.86602540 0.00000000 0.00000 -0.86602540 0.50000000 0.00000000 0.00000 0.00000000 0.00000000 -1.00000000 0.00000 17 'point symmetry operation' ? ? -0.80901699 -0.46708618 -0.35682209 0.00000 -0.46708618 0.14235033 0.87267800 0.00000 -0.35682209 0.87267800 -0.33333333 0.00000 18 'point symmetry operation' ? ? -1.00000000 0.00000000 0.00000000 0.00000 0.00000000 -0.74535599 0.66666667 0.00000 0.00000000 0.66666667 0.74535599 0.00000 19 'point symmetry operation' ? ? -0.80901699 -0.11026409 0.57735027 0.00000 -0.11026409 -0.93633900 -0.33333333 0.00000 0.57735027 -0.33333333 0.74535599 0.00000 20 'point symmetry operation' ? ? -0.50000000 -0.64549722 0.57735027 0.00000 -0.64549722 -0.16666667 -0.74535599 0.00000 0.57735027 -0.74535599 -0.33333333 0.00000 21 'point symmetry operation' ? ? -0.30901699 0.17841104 -0.93417236 0.00000 0.75576131 0.64235033 -0.12732200 0.00000 0.57735027 -0.74535599 -0.33333333 0.00000 22 'point symmetry operation' ? ? -0.50000000 0.86602540 0.00000000 0.00000 0.86602540 0.50000000 0.00000000 0.00000 0.00000000 0.00000000 -1.00000000 0.00000 23 'point symmetry operation' ? ? 0.00000000 0.35682209 0.93417236 0.00000 0.93417236 0.33333333 -0.12732200 0.00000 -0.35682209 0.87267800 -0.33333333 0.00000 24 'point symmetry operation' ? ? 0.50000000 -0.64549722 0.57735027 0.00000 0.86602540 0.37267800 -0.33333333 0.00000 0.00000000 0.66666667 0.74535599 0.00000 25 'point symmetry operation' ? ? 0.30901699 -0.75576131 -0.57735027 0.00000 0.75576131 0.56366100 -0.33333333 0.00000 0.57735027 -0.33333333 0.74535599 0.00000 26 'point symmetry operation' ? ? -0.50000000 -0.64549722 0.57735027 0.00000 0.64549722 0.16666667 0.74535599 0.00000 -0.57735027 0.74535599 0.33333333 0.00000 27 'point symmetry operation' ? ? -0.50000000 -0.86602540 0.00000000 0.00000 0.86602540 -0.50000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 28 'point symmetry operation' ? ? -0.80901699 -0.46708618 -0.35682209 0.00000 0.46708618 -0.14235033 -0.87267800 0.00000 0.35682209 -0.87267800 0.33333333 0.00000 29 'point symmetry operation' ? ? -1.00000000 0.00000000 0.00000000 0.00000 0.00000000 0.74535599 -0.66666667 0.00000 0.00000000 -0.66666667 -0.74535599 0.00000 30 'point symmetry operation' ? ? -0.80901699 -0.11026409 0.57735027 0.00000 0.11026409 0.93633900 0.33333333 0.00000 -0.57735027 0.33333333 -0.74535599 0.00000 31 'point symmetry operation' ? ? 0.80901699 0.11026409 -0.57735027 0.00000 -0.46708618 -0.47568366 -0.74535599 0.00000 -0.35682209 0.87267800 -0.33333333 0.00000 32 'point symmetry operation' ? ? 0.50000000 0.64549722 -0.57735027 0.00000 -0.86602540 0.37267800 -0.33333333 0.00000 0.00000000 0.66666667 0.74535599 0.00000 33 'point symmetry operation' ? ? 0.50000000 0.86602540 0.00000000 0.00000 -0.64549722 0.37267800 0.66666667 0.00000 0.57735027 -0.33333333 0.74535599 0.00000 34 'point symmetry operation' ? ? 0.80901699 0.46708618 0.35682209 0.00000 -0.11026409 -0.47568366 0.87267800 0.00000 0.57735027 -0.74535599 -0.33333333 0.00000 35 'point symmetry operation' ? ? 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 -1.00000000 0.00000000 0.00000 0.00000000 0.00000000 -1.00000000 0.00000 36 'point symmetry operation' ? ? 0.00000000 0.35682209 0.93417236 0.00000 -0.93417236 -0.33333333 0.12732200 0.00000 0.35682209 -0.87267800 0.33333333 0.00000 37 'point symmetry operation' ? ? 0.50000000 -0.64549722 0.57735027 0.00000 -0.86602540 -0.37267800 0.33333333 0.00000 0.00000000 -0.66666667 -0.74535599 0.00000 38 'point symmetry operation' ? ? 0.30901699 -0.75576131 -0.57735027 0.00000 -0.75576131 -0.56366100 0.33333333 0.00000 -0.57735027 0.33333333 -0.74535599 0.00000 39 'point symmetry operation' ? ? -0.30901699 0.17841104 -0.93417236 0.00000 -0.75576131 -0.64235033 0.12732200 0.00000 -0.57735027 0.74535599 0.33333333 0.00000 40 'point symmetry operation' ? ? -0.50000000 0.86602540 0.00000000 0.00000 -0.86602540 -0.50000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 41 'point symmetry operation' ? ? -0.30901699 0.75576131 0.57735027 0.00000 0.17841104 0.64235033 -0.74535599 0.00000 -0.93417236 -0.12732200 -0.33333333 0.00000 42 'point symmetry operation' ? ? 0.30901699 -0.17841104 0.93417236 0.00000 0.17841104 0.97568366 0.12732200 0.00000 -0.93417236 0.12732200 0.33333333 0.00000 43 'point symmetry operation' ? ? 0.50000000 -0.86602540 0.00000000 0.00000 0.64549722 0.37267800 0.66666667 0.00000 -0.57735027 -0.33333333 0.74535599 0.00000 44 'point symmetry operation' ? ? 0.00000000 -0.35682209 -0.93417236 0.00000 0.93417236 -0.33333333 0.12732200 0.00000 -0.35682209 -0.87267800 0.33333333 0.00000 45 'point symmetry operation' ? ? -0.50000000 0.64549722 -0.57735027 0.00000 0.64549722 -0.16666667 -0.74535599 0.00000 -0.57735027 -0.74535599 -0.33333333 0.00000 46 'point symmetry operation' ? ? 0.80901699 -0.46708618 -0.35682209 0.00000 0.11026409 -0.47568366 0.87267800 0.00000 -0.57735027 -0.74535599 -0.33333333 0.00000 47 'point symmetry operation' ? ? 0.30901699 0.17841104 -0.93417236 0.00000 0.17841104 -0.97568366 -0.12732200 0.00000 -0.93417236 -0.12732200 -0.33333333 0.00000 48 'point symmetry operation' ? ? 0.00000000 0.93417236 -0.35682209 0.00000 -0.35682209 -0.33333333 -0.87267800 0.00000 -0.93417236 0.12732200 0.33333333 0.00000 49 'point symmetry operation' ? ? 0.30901699 0.75576131 0.57735027 0.00000 -0.75576131 0.56366100 -0.33333333 0.00000 -0.57735027 -0.33333333 0.74535599 0.00000 50 'point symmetry operation' ? ? 0.80901699 -0.11026409 0.57735027 0.00000 -0.46708618 0.47568366 0.74535599 0.00000 -0.35682209 -0.87267800 0.33333333 0.00000 51 'point symmetry operation' ? ? 0.00000000 -0.93417236 0.35682209 0.00000 0.35682209 -0.33333333 -0.87267800 0.00000 0.93417236 0.12732200 0.33333333 0.00000 52 'point symmetry operation' ? ? -0.30901699 -0.75576131 -0.57735027 0.00000 -0.17841104 0.64235033 -0.74535599 0.00000 0.93417236 -0.12732200 -0.33333333 0.00000 53 'point symmetry operation' ? ? -0.80901699 0.11026409 -0.57735027 0.00000 -0.11026409 0.93633900 0.33333333 0.00000 0.57735027 0.33333333 -0.74535599 0.00000 54 'point symmetry operation' ? ? -0.80901699 0.46708618 0.35682209 0.00000 0.46708618 0.14235033 0.87267800 0.00000 0.35682209 0.87267800 -0.33333333 0.00000 55 'point symmetry operation' ? ? -0.30901699 -0.17841104 0.93417236 0.00000 0.75576131 -0.64235033 0.12732200 0.00000 0.57735027 0.74535599 0.33333333 0.00000 56 'point symmetry operation' ? ? -0.50000000 0.64549722 -0.57735027 0.00000 -0.64549722 0.16666667 0.74535599 0.00000 0.57735027 0.74535599 0.33333333 0.00000 57 'point symmetry operation' ? ? -0.30901699 0.75576131 0.57735027 0.00000 -0.17841104 -0.64235033 0.74535599 0.00000 0.93417236 0.12732200 0.33333333 0.00000 58 'point symmetry operation' ? ? 0.30901699 -0.17841104 0.93417236 0.00000 -0.17841104 -0.97568366 -0.12732200 0.00000 0.93417236 -0.12732200 -0.33333333 0.00000 59 'point symmetry operation' ? ? 0.50000000 -0.86602540 0.00000000 0.00000 -0.64549722 -0.37267800 -0.66666667 0.00000 0.57735027 0.33333333 -0.74535599 0.00000 60 'point symmetry operation' ? ? 0.00000000 -0.35682209 -0.93417236 0.00000 -0.93417236 0.33333333 -0.12732200 0.00000 0.35682209 0.87267800 -0.33333333 0.00000 # _pdbx_point_symmetry.entry_id 2BNY _pdbx_point_symmetry.Schoenflies_symbol I # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-03-22 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2018-01-17 5 'Structure model' 1 4 2023-12-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' Advisory 4 4 'Structure model' 'Data collection' 5 5 'Structure model' Advisory 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' 9 5 'Structure model' Other 10 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' diffrn_source 2 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 3 5 'Structure model' chem_comp_atom 4 5 'Structure model' chem_comp_bond 5 5 'Structure model' database_2 6 5 'Structure model' pdbx_database_status 7 5 'Structure model' pdbx_initial_refinement_model 8 5 'Structure model' pdbx_struct_oper_list 9 5 'Structure model' pdbx_unobs_or_zero_occ_atoms # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_pdbx_database_status.status_code_sf' 5 5 'Structure model' '_pdbx_struct_oper_list.name' 6 5 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 7 5 'Structure model' '_pdbx_struct_oper_list.type' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 # _pdbx_entry_details.entry_id 2BNY _pdbx_entry_details.compound_details 'ENGINEERED RESIDUE IN CHAINS A, B AND C: ASN 87 TO ALA' _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 2 ? ? -175.33 131.83 2 1 PHE A 25 ? ? -142.26 18.82 3 1 SER B 2 ? ? 105.71 87.70 4 1 PHE B 25 ? ? -145.00 26.90 5 1 SER C 2 ? ? -173.28 131.55 6 1 ASN C 12 ? ? -114.23 65.63 7 1 SER C 23 ? ? -135.13 -45.28 8 1 PHE C 25 ? ? -154.08 53.66 9 1 ASN C 36 ? ? 75.65 -179.15 10 1 SER C 37 ? ? -25.97 116.47 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 R A 3 ? P ? D A 3 P 2 1 Y 1 R A 3 ? OP1 ? D A 3 OP1 3 1 Y 1 R A 3 ? OP2 ? D A 3 OP2 4 1 Y 1 S U 4 ? P ? E U 4 P 5 1 Y 1 S U 4 ? OP1 ? E U 4 OP1 6 1 Y 1 S U 4 ? OP2 ? E U 4 OP2 7 1 Y 0 S U 4 ? "C3'" ? E U 4 "C3'" 8 1 Y 0 S U 4 ? "O3'" ? E U 4 "O3'" 9 1 Y 0 S U 4 ? "C2'" ? E U 4 "C2'" 10 1 Y 0 S U 4 ? "O2'" ? E U 4 "O2'" # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 R A 1 ? D A 1 2 1 Y 1 R C 2 ? D C 2 3 1 Y 1 R G 18 ? D G 18 4 1 Y 1 R U 19 ? D U 19 5 1 Y 1 S A 1 ? E A 1 6 1 Y 1 S C 2 ? E C 2 7 1 Y 1 S A 3 ? E A 3 8 1 Y 1 S U 17 ? E U 17 9 1 Y 1 S G 18 ? E G 18 10 1 Y 1 S U 19 ? E U 19 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 CYS N N N N 146 CYS CA C N R 147 CYS C C N N 148 CYS O O N N 149 CYS CB C N N 150 CYS SG S N N 151 CYS OXT O N N 152 CYS H H N N 153 CYS H2 H N N 154 CYS HA H N N 155 CYS HB2 H N N 156 CYS HB3 H N N 157 CYS HG H N N 158 CYS HXT H N N 159 G OP3 O N N 160 G P P N N 161 G OP1 O N N 162 G OP2 O N N 163 G "O5'" O N N 164 G "C5'" C N N 165 G "C4'" C N R 166 G "O4'" O N N 167 G "C3'" C N S 168 G "O3'" O N N 169 G "C2'" C N R 170 G "O2'" O N N 171 G "C1'" C N R 172 G N9 N Y N 173 G C8 C Y N 174 G N7 N Y N 175 G C5 C Y N 176 G C6 C N N 177 G O6 O N N 178 G N1 N N N 179 G C2 C N N 180 G N2 N N N 181 G N3 N N N 182 G C4 C Y N 183 G HOP3 H N N 184 G HOP2 H N N 185 G "H5'" H N N 186 G "H5''" H N N 187 G "H4'" H N N 188 G "H3'" H N N 189 G "HO3'" H N N 190 G "H2'" H N N 191 G "HO2'" H N N 192 G "H1'" H N N 193 G H8 H N N 194 G H1 H N N 195 G H21 H N N 196 G H22 H N N 197 GLN N N N N 198 GLN CA C N S 199 GLN C C N N 200 GLN O O N N 201 GLN CB C N N 202 GLN CG C N N 203 GLN CD C N N 204 GLN OE1 O N N 205 GLN NE2 N N N 206 GLN OXT O N N 207 GLN H H N N 208 GLN H2 H N N 209 GLN HA H N N 210 GLN HB2 H N N 211 GLN HB3 H N N 212 GLN HG2 H N N 213 GLN HG3 H N N 214 GLN HE21 H N N 215 GLN HE22 H N N 216 GLN HXT H N N 217 GLU N N N N 218 GLU CA C N S 219 GLU C C N N 220 GLU O O N N 221 GLU CB C N N 222 GLU CG C N N 223 GLU CD C N N 224 GLU OE1 O N N 225 GLU OE2 O N N 226 GLU OXT O N N 227 GLU H H N N 228 GLU H2 H N N 229 GLU HA H N N 230 GLU HB2 H N N 231 GLU HB3 H N N 232 GLU HG2 H N N 233 GLU HG3 H N N 234 GLU HE2 H N N 235 GLU HXT H N N 236 GLY N N N N 237 GLY CA C N N 238 GLY C C N N 239 GLY O O N N 240 GLY OXT O N N 241 GLY H H N N 242 GLY H2 H N N 243 GLY HA2 H N N 244 GLY HA3 H N N 245 GLY HXT H N N 246 HOH O O N N 247 HOH H1 H N N 248 HOH H2 H N N 249 ILE N N N N 250 ILE CA C N S 251 ILE C C N N 252 ILE O O N N 253 ILE CB C N S 254 ILE CG1 C N N 255 ILE CG2 C N N 256 ILE CD1 C N N 257 ILE OXT O N N 258 ILE H H N N 259 ILE H2 H N N 260 ILE HA H N N 261 ILE HB H N N 262 ILE HG12 H N N 263 ILE HG13 H N N 264 ILE HG21 H N N 265 ILE HG22 H N N 266 ILE HG23 H N N 267 ILE HD11 H N N 268 ILE HD12 H N N 269 ILE HD13 H N N 270 ILE HXT H N N 271 LEU N N N N 272 LEU CA C N S 273 LEU C C N N 274 LEU O O N N 275 LEU CB C N N 276 LEU CG C N N 277 LEU CD1 C N N 278 LEU CD2 C N N 279 LEU OXT O N N 280 LEU H H N N 281 LEU H2 H N N 282 LEU HA H N N 283 LEU HB2 H N N 284 LEU HB3 H N N 285 LEU HG H N N 286 LEU HD11 H N N 287 LEU HD12 H N N 288 LEU HD13 H N N 289 LEU HD21 H N N 290 LEU HD22 H N N 291 LEU HD23 H N N 292 LEU HXT H N N 293 LYS N N N N 294 LYS CA C N S 295 LYS C C N N 296 LYS O O N N 297 LYS CB C N N 298 LYS CG C N N 299 LYS CD C N N 300 LYS CE C N N 301 LYS NZ N N N 302 LYS OXT O N N 303 LYS H H N N 304 LYS H2 H N N 305 LYS HA H N N 306 LYS HB2 H N N 307 LYS HB3 H N N 308 LYS HG2 H N N 309 LYS HG3 H N N 310 LYS HD2 H N N 311 LYS HD3 H N N 312 LYS HE2 H N N 313 LYS HE3 H N N 314 LYS HZ1 H N N 315 LYS HZ2 H N N 316 LYS HZ3 H N N 317 LYS HXT H N N 318 MET N N N N 319 MET CA C N S 320 MET C C N N 321 MET O O N N 322 MET CB C N N 323 MET CG C N N 324 MET SD S N N 325 MET CE C N N 326 MET OXT O N N 327 MET H H N N 328 MET H2 H N N 329 MET HA H N N 330 MET HB2 H N N 331 MET HB3 H N N 332 MET HG2 H N N 333 MET HG3 H N N 334 MET HE1 H N N 335 MET HE2 H N N 336 MET HE3 H N N 337 MET HXT H N N 338 PHE N N N N 339 PHE CA C N S 340 PHE C C N N 341 PHE O O N N 342 PHE CB C N N 343 PHE CG C Y N 344 PHE CD1 C Y N 345 PHE CD2 C Y N 346 PHE CE1 C Y N 347 PHE CE2 C Y N 348 PHE CZ C Y N 349 PHE OXT O N N 350 PHE H H N N 351 PHE H2 H N N 352 PHE HA H N N 353 PHE HB2 H N N 354 PHE HB3 H N N 355 PHE HD1 H N N 356 PHE HD2 H N N 357 PHE HE1 H N N 358 PHE HE2 H N N 359 PHE HZ H N N 360 PHE HXT H N N 361 PRO N N N N 362 PRO CA C N S 363 PRO C C N N 364 PRO O O N N 365 PRO CB C N N 366 PRO CG C N N 367 PRO CD C N N 368 PRO OXT O N N 369 PRO H H N N 370 PRO HA H N N 371 PRO HB2 H N N 372 PRO HB3 H N N 373 PRO HG2 H N N 374 PRO HG3 H N N 375 PRO HD2 H N N 376 PRO HD3 H N N 377 PRO HXT H N N 378 SER N N N N 379 SER CA C N S 380 SER C C N N 381 SER O O N N 382 SER CB C N N 383 SER OG O N N 384 SER OXT O N N 385 SER H H N N 386 SER H2 H N N 387 SER HA H N N 388 SER HB2 H N N 389 SER HB3 H N N 390 SER HG H N N 391 SER HXT H N N 392 THR N N N N 393 THR CA C N S 394 THR C C N N 395 THR O O N N 396 THR CB C N R 397 THR OG1 O N N 398 THR CG2 C N N 399 THR OXT O N N 400 THR H H N N 401 THR H2 H N N 402 THR HA H N N 403 THR HB H N N 404 THR HG1 H N N 405 THR HG21 H N N 406 THR HG22 H N N 407 THR HG23 H N N 408 THR HXT H N N 409 TRP N N N N 410 TRP CA C N S 411 TRP C C N N 412 TRP O O N N 413 TRP CB C N N 414 TRP CG C Y N 415 TRP CD1 C Y N 416 TRP CD2 C Y N 417 TRP NE1 N Y N 418 TRP CE2 C Y N 419 TRP CE3 C Y N 420 TRP CZ2 C Y N 421 TRP CZ3 C Y N 422 TRP CH2 C Y N 423 TRP OXT O N N 424 TRP H H N N 425 TRP H2 H N N 426 TRP HA H N N 427 TRP HB2 H N N 428 TRP HB3 H N N 429 TRP HD1 H N N 430 TRP HE1 H N N 431 TRP HE3 H N N 432 TRP HZ2 H N N 433 TRP HZ3 H N N 434 TRP HH2 H N N 435 TRP HXT H N N 436 TYR N N N N 437 TYR CA C N S 438 TYR C C N N 439 TYR O O N N 440 TYR CB C N N 441 TYR CG C Y N 442 TYR CD1 C Y N 443 TYR CD2 C Y N 444 TYR CE1 C Y N 445 TYR CE2 C Y N 446 TYR CZ C Y N 447 TYR OH O N N 448 TYR OXT O N N 449 TYR H H N N 450 TYR H2 H N N 451 TYR HA H N N 452 TYR HB2 H N N 453 TYR HB3 H N N 454 TYR HD1 H N N 455 TYR HD2 H N N 456 TYR HE1 H N N 457 TYR HE2 H N N 458 TYR HH H N N 459 TYR HXT H N N 460 U OP3 O N N 461 U P P N N 462 U OP1 O N N 463 U OP2 O N N 464 U "O5'" O N N 465 U "C5'" C N N 466 U "C4'" C N R 467 U "O4'" O N N 468 U "C3'" C N S 469 U "O3'" O N N 470 U "C2'" C N R 471 U "O2'" O N N 472 U "C1'" C N R 473 U N1 N N N 474 U C2 C N N 475 U O2 O N N 476 U N3 N N N 477 U C4 C N N 478 U O4 O N N 479 U C5 C N N 480 U C6 C N N 481 U HOP3 H N N 482 U HOP2 H N N 483 U "H5'" H N N 484 U "H5''" H N N 485 U "H4'" H N N 486 U "H3'" H N N 487 U "HO3'" H N N 488 U "H2'" H N N 489 U "HO2'" H N N 490 U "H1'" H N N 491 U H3 H N N 492 U H5 H N N 493 U H6 H N N 494 VAL N N N N 495 VAL CA C N S 496 VAL C C N N 497 VAL O O N N 498 VAL CB C N N 499 VAL CG1 C N N 500 VAL CG2 C N N 501 VAL OXT O N N 502 VAL H H N N 503 VAL H2 H N N 504 VAL HA H N N 505 VAL HB H N N 506 VAL HG11 H N N 507 VAL HG12 H N N 508 VAL HG13 H N N 509 VAL HG21 H N N 510 VAL HG22 H N N 511 VAL HG23 H N N 512 VAL HXT H N N 513 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 CYS N CA sing N N 145 CYS N H sing N N 146 CYS N H2 sing N N 147 CYS CA C sing N N 148 CYS CA CB sing N N 149 CYS CA HA sing N N 150 CYS C O doub N N 151 CYS C OXT sing N N 152 CYS CB SG sing N N 153 CYS CB HB2 sing N N 154 CYS CB HB3 sing N N 155 CYS SG HG sing N N 156 CYS OXT HXT sing N N 157 G OP3 P sing N N 158 G OP3 HOP3 sing N N 159 G P OP1 doub N N 160 G P OP2 sing N N 161 G P "O5'" sing N N 162 G OP2 HOP2 sing N N 163 G "O5'" "C5'" sing N N 164 G "C5'" "C4'" sing N N 165 G "C5'" "H5'" sing N N 166 G "C5'" "H5''" sing N N 167 G "C4'" "O4'" sing N N 168 G "C4'" "C3'" sing N N 169 G "C4'" "H4'" sing N N 170 G "O4'" "C1'" sing N N 171 G "C3'" "O3'" sing N N 172 G "C3'" "C2'" sing N N 173 G "C3'" "H3'" sing N N 174 G "O3'" "HO3'" sing N N 175 G "C2'" "O2'" sing N N 176 G "C2'" "C1'" sing N N 177 G "C2'" "H2'" sing N N 178 G "O2'" "HO2'" sing N N 179 G "C1'" N9 sing N N 180 G "C1'" "H1'" sing N N 181 G N9 C8 sing Y N 182 G N9 C4 sing Y N 183 G C8 N7 doub Y N 184 G C8 H8 sing N N 185 G N7 C5 sing Y N 186 G C5 C6 sing N N 187 G C5 C4 doub Y N 188 G C6 O6 doub N N 189 G C6 N1 sing N N 190 G N1 C2 sing N N 191 G N1 H1 sing N N 192 G C2 N2 sing N N 193 G C2 N3 doub N N 194 G N2 H21 sing N N 195 G N2 H22 sing N N 196 G N3 C4 sing N N 197 GLN N CA sing N N 198 GLN N H sing N N 199 GLN N H2 sing N N 200 GLN CA C sing N N 201 GLN CA CB sing N N 202 GLN CA HA sing N N 203 GLN C O doub N N 204 GLN C OXT sing N N 205 GLN CB CG sing N N 206 GLN CB HB2 sing N N 207 GLN CB HB3 sing N N 208 GLN CG CD sing N N 209 GLN CG HG2 sing N N 210 GLN CG HG3 sing N N 211 GLN CD OE1 doub N N 212 GLN CD NE2 sing N N 213 GLN NE2 HE21 sing N N 214 GLN NE2 HE22 sing N N 215 GLN OXT HXT sing N N 216 GLU N CA sing N N 217 GLU N H sing N N 218 GLU N H2 sing N N 219 GLU CA C sing N N 220 GLU CA CB sing N N 221 GLU CA HA sing N N 222 GLU C O doub N N 223 GLU C OXT sing N N 224 GLU CB CG sing N N 225 GLU CB HB2 sing N N 226 GLU CB HB3 sing N N 227 GLU CG CD sing N N 228 GLU CG HG2 sing N N 229 GLU CG HG3 sing N N 230 GLU CD OE1 doub N N 231 GLU CD OE2 sing N N 232 GLU OE2 HE2 sing N N 233 GLU OXT HXT sing N N 234 GLY N CA sing N N 235 GLY N H sing N N 236 GLY N H2 sing N N 237 GLY CA C sing N N 238 GLY CA HA2 sing N N 239 GLY CA HA3 sing N N 240 GLY C O doub N N 241 GLY C OXT sing N N 242 GLY OXT HXT sing N N 243 HOH O H1 sing N N 244 HOH O H2 sing N N 245 ILE N CA sing N N 246 ILE N H sing N N 247 ILE N H2 sing N N 248 ILE CA C sing N N 249 ILE CA CB sing N N 250 ILE CA HA sing N N 251 ILE C O doub N N 252 ILE C OXT sing N N 253 ILE CB CG1 sing N N 254 ILE CB CG2 sing N N 255 ILE CB HB sing N N 256 ILE CG1 CD1 sing N N 257 ILE CG1 HG12 sing N N 258 ILE CG1 HG13 sing N N 259 ILE CG2 HG21 sing N N 260 ILE CG2 HG22 sing N N 261 ILE CG2 HG23 sing N N 262 ILE CD1 HD11 sing N N 263 ILE CD1 HD12 sing N N 264 ILE CD1 HD13 sing N N 265 ILE OXT HXT sing N N 266 LEU N CA sing N N 267 LEU N H sing N N 268 LEU N H2 sing N N 269 LEU CA C sing N N 270 LEU CA CB sing N N 271 LEU CA HA sing N N 272 LEU C O doub N N 273 LEU C OXT sing N N 274 LEU CB CG sing N N 275 LEU CB HB2 sing N N 276 LEU CB HB3 sing N N 277 LEU CG CD1 sing N N 278 LEU CG CD2 sing N N 279 LEU CG HG sing N N 280 LEU CD1 HD11 sing N N 281 LEU CD1 HD12 sing N N 282 LEU CD1 HD13 sing N N 283 LEU CD2 HD21 sing N N 284 LEU CD2 HD22 sing N N 285 LEU CD2 HD23 sing N N 286 LEU OXT HXT sing N N 287 LYS N CA sing N N 288 LYS N H sing N N 289 LYS N H2 sing N N 290 LYS CA C sing N N 291 LYS CA CB sing N N 292 LYS CA HA sing N N 293 LYS C O doub N N 294 LYS C OXT sing N N 295 LYS CB CG sing N N 296 LYS CB HB2 sing N N 297 LYS CB HB3 sing N N 298 LYS CG CD sing N N 299 LYS CG HG2 sing N N 300 LYS CG HG3 sing N N 301 LYS CD CE sing N N 302 LYS CD HD2 sing N N 303 LYS CD HD3 sing N N 304 LYS CE NZ sing N N 305 LYS CE HE2 sing N N 306 LYS CE HE3 sing N N 307 LYS NZ HZ1 sing N N 308 LYS NZ HZ2 sing N N 309 LYS NZ HZ3 sing N N 310 LYS OXT HXT sing N N 311 MET N CA sing N N 312 MET N H sing N N 313 MET N H2 sing N N 314 MET CA C sing N N 315 MET CA CB sing N N 316 MET CA HA sing N N 317 MET C O doub N N 318 MET C OXT sing N N 319 MET CB CG sing N N 320 MET CB HB2 sing N N 321 MET CB HB3 sing N N 322 MET CG SD sing N N 323 MET CG HG2 sing N N 324 MET CG HG3 sing N N 325 MET SD CE sing N N 326 MET CE HE1 sing N N 327 MET CE HE2 sing N N 328 MET CE HE3 sing N N 329 MET OXT HXT sing N N 330 PHE N CA sing N N 331 PHE N H sing N N 332 PHE N H2 sing N N 333 PHE CA C sing N N 334 PHE CA CB sing N N 335 PHE CA HA sing N N 336 PHE C O doub N N 337 PHE C OXT sing N N 338 PHE CB CG sing N N 339 PHE CB HB2 sing N N 340 PHE CB HB3 sing N N 341 PHE CG CD1 doub Y N 342 PHE CG CD2 sing Y N 343 PHE CD1 CE1 sing Y N 344 PHE CD1 HD1 sing N N 345 PHE CD2 CE2 doub Y N 346 PHE CD2 HD2 sing N N 347 PHE CE1 CZ doub Y N 348 PHE CE1 HE1 sing N N 349 PHE CE2 CZ sing Y N 350 PHE CE2 HE2 sing N N 351 PHE CZ HZ sing N N 352 PHE OXT HXT sing N N 353 PRO N CA sing N N 354 PRO N CD sing N N 355 PRO N H sing N N 356 PRO CA C sing N N 357 PRO CA CB sing N N 358 PRO CA HA sing N N 359 PRO C O doub N N 360 PRO C OXT sing N N 361 PRO CB CG sing N N 362 PRO CB HB2 sing N N 363 PRO CB HB3 sing N N 364 PRO CG CD sing N N 365 PRO CG HG2 sing N N 366 PRO CG HG3 sing N N 367 PRO CD HD2 sing N N 368 PRO CD HD3 sing N N 369 PRO OXT HXT sing N N 370 SER N CA sing N N 371 SER N H sing N N 372 SER N H2 sing N N 373 SER CA C sing N N 374 SER CA CB sing N N 375 SER CA HA sing N N 376 SER C O doub N N 377 SER C OXT sing N N 378 SER CB OG sing N N 379 SER CB HB2 sing N N 380 SER CB HB3 sing N N 381 SER OG HG sing N N 382 SER OXT HXT sing N N 383 THR N CA sing N N 384 THR N H sing N N 385 THR N H2 sing N N 386 THR CA C sing N N 387 THR CA CB sing N N 388 THR CA HA sing N N 389 THR C O doub N N 390 THR C OXT sing N N 391 THR CB OG1 sing N N 392 THR CB CG2 sing N N 393 THR CB HB sing N N 394 THR OG1 HG1 sing N N 395 THR CG2 HG21 sing N N 396 THR CG2 HG22 sing N N 397 THR CG2 HG23 sing N N 398 THR OXT HXT sing N N 399 TRP N CA sing N N 400 TRP N H sing N N 401 TRP N H2 sing N N 402 TRP CA C sing N N 403 TRP CA CB sing N N 404 TRP CA HA sing N N 405 TRP C O doub N N 406 TRP C OXT sing N N 407 TRP CB CG sing N N 408 TRP CB HB2 sing N N 409 TRP CB HB3 sing N N 410 TRP CG CD1 doub Y N 411 TRP CG CD2 sing Y N 412 TRP CD1 NE1 sing Y N 413 TRP CD1 HD1 sing N N 414 TRP CD2 CE2 doub Y N 415 TRP CD2 CE3 sing Y N 416 TRP NE1 CE2 sing Y N 417 TRP NE1 HE1 sing N N 418 TRP CE2 CZ2 sing Y N 419 TRP CE3 CZ3 doub Y N 420 TRP CE3 HE3 sing N N 421 TRP CZ2 CH2 doub Y N 422 TRP CZ2 HZ2 sing N N 423 TRP CZ3 CH2 sing Y N 424 TRP CZ3 HZ3 sing N N 425 TRP CH2 HH2 sing N N 426 TRP OXT HXT sing N N 427 TYR N CA sing N N 428 TYR N H sing N N 429 TYR N H2 sing N N 430 TYR CA C sing N N 431 TYR CA CB sing N N 432 TYR CA HA sing N N 433 TYR C O doub N N 434 TYR C OXT sing N N 435 TYR CB CG sing N N 436 TYR CB HB2 sing N N 437 TYR CB HB3 sing N N 438 TYR CG CD1 doub Y N 439 TYR CG CD2 sing Y N 440 TYR CD1 CE1 sing Y N 441 TYR CD1 HD1 sing N N 442 TYR CD2 CE2 doub Y N 443 TYR CD2 HD2 sing N N 444 TYR CE1 CZ doub Y N 445 TYR CE1 HE1 sing N N 446 TYR CE2 CZ sing Y N 447 TYR CE2 HE2 sing N N 448 TYR CZ OH sing N N 449 TYR OH HH sing N N 450 TYR OXT HXT sing N N 451 U OP3 P sing N N 452 U OP3 HOP3 sing N N 453 U P OP1 doub N N 454 U P OP2 sing N N 455 U P "O5'" sing N N 456 U OP2 HOP2 sing N N 457 U "O5'" "C5'" sing N N 458 U "C5'" "C4'" sing N N 459 U "C5'" "H5'" sing N N 460 U "C5'" "H5''" sing N N 461 U "C4'" "O4'" sing N N 462 U "C4'" "C3'" sing N N 463 U "C4'" "H4'" sing N N 464 U "O4'" "C1'" sing N N 465 U "C3'" "O3'" sing N N 466 U "C3'" "C2'" sing N N 467 U "C3'" "H3'" sing N N 468 U "O3'" "HO3'" sing N N 469 U "C2'" "O2'" sing N N 470 U "C2'" "C1'" sing N N 471 U "C2'" "H2'" sing N N 472 U "O2'" "HO2'" sing N N 473 U "C1'" N1 sing N N 474 U "C1'" "H1'" sing N N 475 U N1 C2 sing N N 476 U N1 C6 sing N N 477 U C2 O2 doub N N 478 U C2 N3 sing N N 479 U N3 C4 sing N N 480 U N3 H3 sing N N 481 U C4 O4 doub N N 482 U C4 C5 sing N N 483 U C5 C6 doub N N 484 U C5 H5 sing N N 485 U C6 H6 sing N N 486 VAL N CA sing N N 487 VAL N H sing N N 488 VAL N H2 sing N N 489 VAL CA C sing N N 490 VAL CA CB sing N N 491 VAL CA HA sing N N 492 VAL C O doub N N 493 VAL C OXT sing N N 494 VAL CB CG1 sing N N 495 VAL CB CG2 sing N N 496 VAL CB HB sing N N 497 VAL CG1 HG11 sing N N 498 VAL CG1 HG12 sing N N 499 VAL CG1 HG13 sing N N 500 VAL CG2 HG21 sing N N 501 VAL CG2 HG22 sing N N 502 VAL CG2 HG23 sing N N 503 VAL OXT HXT sing N N 504 # _ndb_struct_conf_na.entry_id 2BNY _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 D A 3 1_555 D U 17 1_555 0.006 0.028 -0.135 -0.575 -26.456 -2.402 1 R_A3:U17_R R 3 ? R 17 ? 20 1 1 D U 4 1_555 D A 16 1_555 0.001 -0.108 0.184 -5.299 -16.407 7.650 2 R_U4:A16_R R 4 ? R 16 ? 20 1 1 D G 5 1_555 D C 15 1_555 -0.337 -0.064 0.264 4.747 -6.823 2.426 3 R_G5:C15_R R 5 ? R 15 ? 19 1 1 D G 7 1_555 D C 14 1_555 -0.663 -0.161 0.103 -4.295 -9.737 2.842 4 R_G7:C14_R R 7 ? R 14 ? 19 1 1 D G 8 1_555 D C 13 1_555 -0.599 -0.242 0.469 7.734 3.591 -1.426 5 R_G8:C13_R R 8 ? R 13 ? 19 1 1 E U 4 1_555 E A 16 1_555 -0.377 -0.060 -0.055 -13.140 5.028 -6.305 6 S_U4:A16_S S 4 ? S 16 ? 20 1 1 E G 5 1_555 E C 15 1_555 0.600 0.263 -0.048 -4.576 -14.655 -7.592 7 S_G5:C15_S S 5 ? S 15 ? 19 1 1 E G 7 1_555 E C 14 1_555 -0.904 0.535 -0.644 -9.763 -1.026 5.595 8 S_G7:C14_S S 7 ? S 14 ? ? 1 1 E G 8 1_555 E C 13 1_555 0.456 0.163 -0.080 1.929 3.433 1.454 9 S_G8:C13_S S 8 ? S 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 D A 3 1_555 D U 17 1_555 D U 4 1_555 D A 16 1_555 0.393 -0.865 3.452 -0.584 10.466 35.930 -2.756 -0.692 3.082 16.538 0.923 37.379 1 RR_A3U4:A16U17_RR R 3 ? R 17 ? R 4 ? R 16 ? 1 D U 4 1_555 D A 16 1_555 D G 5 1_555 D C 15 1_555 -0.044 -1.160 3.035 -0.760 10.334 31.401 -3.572 -0.035 2.536 18.474 1.359 33.025 2 RR_U4G5:C15A16_RR R 4 ? R 16 ? R 5 ? R 15 ? 1 D G 5 1_555 D C 15 1_555 D G 7 1_555 D C 14 1_555 0.198 -2.332 3.470 1.163 3.306 30.072 -5.149 -0.138 3.207 6.344 -2.232 30.271 3 RR_G5G7:C14C15_RR R 5 ? R 15 ? R 7 ? R 14 ? 1 D G 7 1_555 D C 14 1_555 D G 8 1_555 D C 13 1_555 -0.416 -1.861 2.801 -3.290 3.246 34.302 -3.548 0.276 2.647 5.473 5.547 34.602 4 RR_G7G8:C13C14_RR R 7 ? R 14 ? R 8 ? R 13 ? 1 E U 4 1_555 E A 16 1_555 E G 5 1_555 E C 15 1_555 0.400 -1.606 3.072 2.023 16.293 37.351 -3.843 -0.385 2.229 24.068 -2.988 40.682 5 SS_U4G5:C15A16_SS S 4 ? S 16 ? S 5 ? S 15 ? 1 E G 5 1_555 E C 15 1_555 E G 7 1_555 E C 14 1_555 0.940 -2.162 3.693 1.460 -3.341 26.326 -3.668 -1.593 3.977 -7.291 -3.186 26.572 6 SS_G5G7:C14C15_SS S 5 ? S 15 ? S 7 ? S 14 ? 1 E G 7 1_555 E C 14 1_555 E G 8 1_555 E C 13 1_555 -0.341 -1.224 3.060 -1.188 7.218 41.371 -2.388 0.364 2.825 10.121 1.666 41.985 7 SS_G7G8:C13C14_SS S 7 ? S 14 ? S 8 ? S 13 ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2MS2 _pdbx_initial_refinement_model.details 'PDB ENTRY 2MS2' #