HEADER LECTIN 12-APR-05 2BOJ TITLE CRYSTAL STRUCTURE OF PSEUDOMONAS AERUGINOSA LECTIN (PA-IIL) COMPLEXED TITLE 2 WITH METHYL-B-D-ARABINOPYRANOSIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PSEUDOMONAS AERUGINOSA LECTIN II; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: PA-IIL; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: PAO1; SOURCE 5 ATCC: 15692; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET25; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET25PAIIL KEYWDS LECTIN, ARABINOSE, CALCIUM, LEWIS A, CYSTIC FIBROSIS EXPDTA X-RAY DIFFRACTION AUTHOR C.D.SABIN,E.P.MITCHELL,M.WIMMEROVA,A.IMBERTY REVDAT 4 13-DEC-23 2BOJ 1 HETSYN REVDAT 3 29-JUL-20 2BOJ 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 24-FEB-09 2BOJ 1 VERSN REVDAT 1 22-FEB-06 2BOJ 0 JRNL AUTH C.D.SABIN,E.P.MITCHELL,M.POKARNA,C.GAUTIER,J.-P.UTILLE, JRNL AUTH 2 M.WIMMEROVA,A.IMBERTY JRNL TITL BINDING OF DIFFERENT MONOSACCHARIDES BY LECTIN PA-IIL FROM JRNL TITL 2 PSEUDOMAN AERUGINOSA: THERMODYNAMICS DATA CORRELATED WITH JRNL TITL 3 X-RAY STRUCTURES. JRNL REF FEBS LETT. V. 580 982 2006 JRNL REFN ISSN 0014-5793 JRNL PMID 16438968 JRNL DOI 10.1016/J.FEBSLET.2006.01.030 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.MITCHELL,C.D.SABIN,L.SNAJDROVA,M.POKORNA,S.PERRET, REMARK 1 AUTH 2 C.GAUTIER,C.HOFR,N.GILBOA-GARBER,J.KOCA,M.WIMMEROVA, REMARK 1 AUTH 3 A.IMBERTY REMARK 1 TITL HIGH AFFINITY FUCOSE BINDING OF PSEUDOMONAS AERUGINOSA REMARK 1 TITL 2 LECTIN PA-IIL: 1.0 A RESOLUTION CRYSTAL STRUCTURE OF THE REMARK 1 TITL 3 COMPLEX COMBINED WITH THERMODYNAMICS AND COMPUTATIONAL REMARK 1 TITL 4 CHEMISTRY APPROACHES REMARK 1 REF PROTEINS: STRUCT.,FUNCT., V. 58 735 2005 REMARK 1 REF 2 GENET. REMARK 1 REFN ISSN 0887-3585 REMARK 1 PMID 15573375 REMARK 1 DOI 10.1002/PROT.20330 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 34653 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.137 REMARK 3 R VALUE (WORKING SET) : 0.136 REMARK 3 FREE R VALUE : 0.172 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1116 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2134 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1770 REMARK 3 BIN FREE R VALUE SET COUNT : 62 REMARK 3 BIN FREE R VALUE : 0.2520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3308 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 57 REMARK 3 SOLVENT ATOMS : 612 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.05000 REMARK 3 B22 (A**2) : -0.03000 REMARK 3 B33 (A**2) : 0.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.118 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.108 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.068 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.129 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3538 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4881 ; 1.320 ; 1.935 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 486 ; 6.521 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 156 ;43.637 ;27.179 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 495 ;11.568 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;19.172 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 614 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2740 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1787 ; 0.222 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2553 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 541 ; 0.154 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 75 ; 0.193 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 64 ; 0.183 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2387 ; 0.621 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3832 ; 1.051 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1248 ; 1.751 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1049 ; 2.832 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. DISORDERED SIDE CHAINS ATOMS WERE MODELED WITH REMARK 3 OCCUPANCIES LESS THAN 1.0 REMARK 4 REMARK 4 2BOJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-APR-05. REMARK 100 THE DEPOSITION ID IS D_1290023507. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-02 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL DIAMOND REMARK 200 OPTICS : TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35769 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 29.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 3.730 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.45 REMARK 200 R MERGE FOR SHELL (I) : 0.19000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.640 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1UZV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 29.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS HCL 0.1M, PH8.5, 1.75 M AMMONIUM REMARK 280 SULFATE, PH 8.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.08400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 2113 O HOH C 2124 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 86 -40.65 -136.53 REMARK 500 GLU B 86 -43.80 -143.34 REMARK 500 THR C 84 37.37 39.95 REMARK 500 GLU C 86 -36.29 -140.91 REMARK 500 GLU C 86 -43.93 -142.93 REMARK 500 GLU D 86 -46.48 -135.22 REMARK 500 GLU D 86 -33.20 -143.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2025 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH C2023 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH D2042 DISTANCE = 6.50 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1116 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 21 O REMARK 620 2 ASP A 101 OD2 153.0 REMARK 620 3 ASP A 101 OD1 144.9 45.3 REMARK 620 4 ASN A 103 OD1 86.5 74.4 72.0 REMARK 620 5 ASP A 104 OD1 82.8 114.8 69.5 88.1 REMARK 620 6 ARW A1115 O4 77.1 115.5 129.0 158.5 103.3 REMARK 620 7 ARW A1115 O3 132.8 73.0 63.3 135.2 78.8 65.7 REMARK 620 8 GLY C 114 O 79.7 80.4 124.8 86.8 162.0 76.8 116.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1117 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 95 OE1 REMARK 620 2 GLU A 95 OE2 52.8 REMARK 620 3 ASP A 99 OD1 88.4 81.2 REMARK 620 4 ASP A 101 OD1 78.0 129.6 87.8 REMARK 620 5 ASP A 104 OD1 115.3 129.3 148.5 78.0 REMARK 620 6 ASP A 104 OD2 83.4 79.6 160.4 107.6 49.8 REMARK 620 7 ARW A1115 O3 149.2 146.5 76.7 74.6 72.4 118.3 REMARK 620 8 ARW A1115 O2 139.6 87.8 94.5 142.3 80.9 80.7 69.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C1117 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 114 O REMARK 620 2 ASN C 21 O 77.1 REMARK 620 3 ASP C 101 OD1 124.1 146.1 REMARK 620 4 ASP C 101 OD2 80.4 152.1 45.3 REMARK 620 5 ASN C 103 OD1 85.4 87.0 70.6 74.9 REMARK 620 6 ASP C 104 OD1 161.4 84.8 70.3 115.5 89.5 REMARK 620 7 ARW C1115 O3 119.8 134.0 62.7 72.2 133.4 76.1 REMARK 620 8 ARW C1115 O4 78.4 75.8 130.4 115.5 158.5 101.4 67.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1116 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 21 O REMARK 620 2 ASP B 101 OD1 144.9 REMARK 620 3 ASP B 101 OD2 154.3 45.1 REMARK 620 4 ASN B 103 OD1 87.3 71.2 75.0 REMARK 620 5 ASP B 104 OD1 81.5 71.4 116.4 90.0 REMARK 620 6 ARW B1115 O3 129.7 64.5 75.0 135.7 75.2 REMARK 620 7 ARW B1115 O4 76.6 128.6 115.7 160.0 99.1 64.2 REMARK 620 8 GLY D 114 O 79.8 124.9 80.9 87.5 161.2 118.7 78.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1117 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 95 OE2 REMARK 620 2 GLU B 95 OE1 53.5 REMARK 620 3 ASP B 99 OD1 84.3 85.3 REMARK 620 4 ASP B 101 OD1 132.6 79.7 84.4 REMARK 620 5 ASP B 104 OD1 127.2 119.8 147.0 80.0 REMARK 620 6 ASP B 104 OD2 78.3 85.0 162.6 107.9 49.8 REMARK 620 7 ARW B1115 O2 85.8 139.0 96.5 141.2 78.6 81.7 REMARK 620 8 ARW B1115 O3 145.4 150.4 77.4 74.8 70.5 117.1 67.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D1117 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 114 O REMARK 620 2 ASN D 21 O 79.8 REMARK 620 3 ASP D 101 OD1 124.5 143.4 REMARK 620 4 ASP D 101 OD2 81.3 155.4 45.2 REMARK 620 5 ASN D 103 OD1 86.8 88.0 68.9 75.4 REMARK 620 6 ASP D 104 OD1 161.5 82.2 69.7 114.7 88.3 REMARK 620 7 ARW D1115 O3 117.6 130.6 66.5 72.6 135.3 77.8 REMARK 620 8 ARW D1115 O4 78.8 75.7 131.1 115.6 159.9 100.9 64.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C1116 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 95 OE2 REMARK 620 2 GLU C 95 OE1 53.3 REMARK 620 3 ASP C 99 OD1 82.8 87.1 REMARK 620 4 ASP C 101 OD1 131.3 79.1 85.2 REMARK 620 5 ASP C 104 OD2 78.8 83.8 161.4 108.9 REMARK 620 6 ASP C 104 OD1 129.6 117.1 146.7 78.1 51.2 REMARK 620 7 ARW C1115 O2 87.1 139.5 97.4 141.3 79.5 79.2 REMARK 620 8 ARW C1115 O3 143.8 150.2 75.4 75.6 119.2 72.7 67.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D1116 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 95 OE1 REMARK 620 2 GLU D 95 OE2 53.4 REMARK 620 3 ASP D 99 OD1 88.0 84.9 REMARK 620 4 ASP D 101 OD1 78.6 131.2 85.1 REMARK 620 5 ASP D 104 OD2 81.6 78.2 163.1 105.7 REMARK 620 6 ASP D 104 OD1 116.0 128.1 146.3 77.5 50.5 REMARK 620 7 ARW D1115 O2 138.3 85.9 97.7 142.8 81.6 80.2 REMARK 620 8 ARW D1115 O3 151.8 145.1 76.4 76.8 118.2 71.6 68.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GZT RELATED DB: PDB REMARK 900 PSEUDOMONAS AERUGINOSA LECTIN II (PA-IIL) TOGETHER WITH FUCOSE REMARK 900 RELATED ID: 1OUR RELATED DB: PDB REMARK 900 LECB (PA-LII) IN COMPLEX WITH MANNOSE REMARK 900 RELATED ID: 1OUS RELATED DB: PDB REMARK 900 LECB (PA-LII) CALCIUM-FREE REMARK 900 RELATED ID: 1OUX RELATED DB: PDB REMARK 900 LECB (PA-LII) SUGAR-FREE REMARK 900 RELATED ID: 1OVP RELATED DB: PDB REMARK 900 LECB (PA-LII) IN COMPLEX WITH FRUCTOSE REMARK 900 RELATED ID: 1OVS RELATED DB: PDB REMARK 900 LECB (PA-LII) IN COMPLEX WITH CORE TRIMANNOSIDE REMARK 900 RELATED ID: 1OXC RELATED DB: PDB REMARK 900 LECB (PA-LII) IN COMPLEX WITH FUCOSE REMARK 900 RELATED ID: 1UZV RELATED DB: PDB REMARK 900 HIGH AFFINITY FUCOSE BINDING OF PSEUDOMONAS AERUGINOSA LECTIN II: REMARK 900 1.0 E CRYSTAL STRUCTURE OF THE COMPLEX REMARK 900 RELATED ID: 1W43 RELATED DB: PDB REMARK 900 STRUCTURE OF PSEUDOMONAS AERUGINOSA LECTIN II (PA-IIL)COMPLEXED REMARK 900 WITH LEWISA TRISACCHARIDE REMARK 900 RELATED ID: 1W8F RELATED DB: PDB REMARK 900 PSEUDOMONAS AERUGINOSA LECTIN II (PA-IIL) COMPLEXED WITH LACTO-N- REMARK 900 NEO-FUCOPENTAOSE V( LNPFV) REMARK 900 RELATED ID: 1W8H RELATED DB: PDB REMARK 900 STRUCTURE OF PSEUDOMONAS AERUGINOSA LECTIN II (PA-IIL)COMPLEXED REMARK 900 WITH LEWISA TRISACCHARIDE REMARK 900 RELATED ID: 2BP6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PSEUDOMONAS AERUGINOSA LECTIN (PA-IIL) REMARK 900 COMPLEXED WITH A-L- GALACTOPYRANOSIDE DBREF 2BOJ A 1 114 UNP Q9HYN5 Q9HYN5_PSEAE 2 115 DBREF 2BOJ B 1 114 UNP Q9HYN5 Q9HYN5_PSEAE 2 115 DBREF 2BOJ C 1 114 UNP Q9HYN5 Q9HYN5_PSEAE 2 115 DBREF 2BOJ D 1 114 UNP Q9HYN5 Q9HYN5_PSEAE 2 115 SEQRES 1 A 114 ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR ARG SEQRES 2 A 114 PHE GLY VAL THR ALA PHE ALA ASN SER SER GLY THR GLN SEQRES 3 A 114 THR VAL ASN VAL LEU VAL ASN ASN GLU THR ALA ALA THR SEQRES 4 A 114 PHE SER GLY GLN SER THR ASN ASN ALA VAL ILE GLY THR SEQRES 5 A 114 GLN VAL LEU ASN SER GLY SER SER GLY LYS VAL GLN VAL SEQRES 6 A 114 GLN VAL SER VAL ASN GLY ARG PRO SER ASP LEU VAL SER SEQRES 7 A 114 ALA GLN VAL ILE LEU THR ASN GLU LEU ASN PHE ALA LEU SEQRES 8 A 114 VAL GLY SER GLU ASP GLY THR ASP ASN ASP TYR ASN ASP SEQRES 9 A 114 ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY SEQRES 1 B 114 ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR ARG SEQRES 2 B 114 PHE GLY VAL THR ALA PHE ALA ASN SER SER GLY THR GLN SEQRES 3 B 114 THR VAL ASN VAL LEU VAL ASN ASN GLU THR ALA ALA THR SEQRES 4 B 114 PHE SER GLY GLN SER THR ASN ASN ALA VAL ILE GLY THR SEQRES 5 B 114 GLN VAL LEU ASN SER GLY SER SER GLY LYS VAL GLN VAL SEQRES 6 B 114 GLN VAL SER VAL ASN GLY ARG PRO SER ASP LEU VAL SER SEQRES 7 B 114 ALA GLN VAL ILE LEU THR ASN GLU LEU ASN PHE ALA LEU SEQRES 8 B 114 VAL GLY SER GLU ASP GLY THR ASP ASN ASP TYR ASN ASP SEQRES 9 B 114 ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY SEQRES 1 C 114 ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR ARG SEQRES 2 C 114 PHE GLY VAL THR ALA PHE ALA ASN SER SER GLY THR GLN SEQRES 3 C 114 THR VAL ASN VAL LEU VAL ASN ASN GLU THR ALA ALA THR SEQRES 4 C 114 PHE SER GLY GLN SER THR ASN ASN ALA VAL ILE GLY THR SEQRES 5 C 114 GLN VAL LEU ASN SER GLY SER SER GLY LYS VAL GLN VAL SEQRES 6 C 114 GLN VAL SER VAL ASN GLY ARG PRO SER ASP LEU VAL SER SEQRES 7 C 114 ALA GLN VAL ILE LEU THR ASN GLU LEU ASN PHE ALA LEU SEQRES 8 C 114 VAL GLY SER GLU ASP GLY THR ASP ASN ASP TYR ASN ASP SEQRES 9 C 114 ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY SEQRES 1 D 114 ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR ARG SEQRES 2 D 114 PHE GLY VAL THR ALA PHE ALA ASN SER SER GLY THR GLN SEQRES 3 D 114 THR VAL ASN VAL LEU VAL ASN ASN GLU THR ALA ALA THR SEQRES 4 D 114 PHE SER GLY GLN SER THR ASN ASN ALA VAL ILE GLY THR SEQRES 5 D 114 GLN VAL LEU ASN SER GLY SER SER GLY LYS VAL GLN VAL SEQRES 6 D 114 GLN VAL SER VAL ASN GLY ARG PRO SER ASP LEU VAL SER SEQRES 7 D 114 ALA GLN VAL ILE LEU THR ASN GLU LEU ASN PHE ALA LEU SEQRES 8 D 114 VAL GLY SER GLU ASP GLY THR ASP ASN ASP TYR ASN ASP SEQRES 9 D 114 ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY HET ARW A1115 11 HET CA A1116 1 HET CA A1117 1 HET ARW B1115 11 HET CA B1116 1 HET CA B1117 1 HET ARW C1115 11 HET CA C1116 1 HET CA C1117 1 HET SO4 C1118 5 HET ARW D1115 11 HET CA D1116 1 HET CA D1117 1 HETNAM ARW METHYL BETA-D-ARABINOPYRANOSIDE HETNAM CA CALCIUM ION HETNAM SO4 SULFATE ION HETSYN ARW METHYL BETA-D-ARABINOSIDE; METHYL D-ARABINOSIDE; METHYL HETSYN 2 ARW ARABINOSIDE FORMUL 5 ARW 4(C6 H12 O5) FORMUL 6 CA 8(CA 2+) FORMUL 14 SO4 O4 S 2- FORMUL 18 HOH *612(H2 O) SHEET 1 AA 4 VAL A 5 THR A 7 0 SHEET 2 AA 4 LYS A 62 VAL A 69 -1 O VAL A 63 N PHE A 6 SHEET 3 AA 4 GLN A 26 VAL A 32 -1 O THR A 27 N SER A 68 SHEET 4 AA 4 GLU A 35 GLY A 42 -1 O ALA A 38 N VAL A 30 SHEET 1 AB 5 ASN A 46 LEU A 55 0 SHEET 2 AB 5 PHE A 14 ASN A 21 -1 O VAL A 16 N GLN A 53 SHEET 3 AB 5 ASP A 104 TRP A 111 -1 O VAL A 108 N THR A 17 SHEET 4 AB 5 LEU A 87 SER A 94 -1 O VAL A 92 N VAL A 107 SHEET 5 AB 5 ASP A 75 LEU A 83 -1 O ALA A 79 N LEU A 91 SHEET 1 BA 4 VAL B 5 THR B 7 0 SHEET 2 BA 4 LYS B 62 VAL B 69 -1 O VAL B 63 N PHE B 6 SHEET 3 BA 4 GLN B 26 VAL B 32 -1 O THR B 27 N SER B 68 SHEET 4 BA 4 GLU B 35 GLY B 42 -1 O ALA B 38 N VAL B 30 SHEET 1 BB 5 ASN B 46 LEU B 55 0 SHEET 2 BB 5 PHE B 14 ASN B 21 -1 O VAL B 16 N GLN B 53 SHEET 3 BB 5 ASP B 104 TRP B 111 -1 O VAL B 108 N THR B 17 SHEET 4 BB 5 LEU B 87 SER B 94 -1 O VAL B 92 N VAL B 107 SHEET 5 BB 5 ASP B 75 LEU B 83 -1 O ALA B 79 N LEU B 91 SHEET 1 CA 4 VAL C 5 THR C 7 0 SHEET 2 CA 4 LYS C 62 VAL C 69 -1 O VAL C 63 N PHE C 6 SHEET 3 CA 4 GLN C 26 VAL C 32 -1 O THR C 27 N SER C 68 SHEET 4 CA 4 GLU C 35 GLY C 42 -1 O ALA C 38 N VAL C 30 SHEET 1 CB 5 ASN C 46 LEU C 55 0 SHEET 2 CB 5 PHE C 14 ASN C 21 -1 O VAL C 16 N GLN C 53 SHEET 3 CB 5 ASP C 104 TRP C 111 -1 O VAL C 108 N THR C 17 SHEET 4 CB 5 LEU C 87 SER C 94 -1 O VAL C 92 N VAL C 107 SHEET 5 CB 5 ASP C 75 LEU C 83 -1 O ALA C 79 N LEU C 91 SHEET 1 DA 4 VAL D 5 THR D 7 0 SHEET 2 DA 4 LYS D 62 VAL D 69 -1 O VAL D 63 N PHE D 6 SHEET 3 DA 4 GLN D 26 VAL D 32 -1 O THR D 27 N SER D 68 SHEET 4 DA 4 GLU D 35 GLY D 42 -1 O ALA D 38 N VAL D 30 SHEET 1 DB 5 ASN D 46 LEU D 55 0 SHEET 2 DB 5 PHE D 14 ASN D 21 -1 O VAL D 16 N GLN D 53 SHEET 3 DB 5 ASP D 104 TRP D 111 -1 O VAL D 108 N THR D 17 SHEET 4 DB 5 LEU D 87 SER D 94 -1 O VAL D 92 N VAL D 107 SHEET 5 DB 5 ASP D 75 LEU D 83 -1 O ALA D 79 N LEU D 91 LINK O ASN A 21 CA CA A1116 1555 1555 2.33 LINK OE1 GLU A 95 CA CA A1117 1555 1555 2.45 LINK OE2 GLU A 95 CA CA A1117 1555 1555 2.52 LINK OD1 ASP A 99 CA CA A1117 1555 1555 2.28 LINK OD2 ASP A 101 CA CA A1116 1555 1555 2.43 LINK OD1 ASP A 101 CA CA A1116 1555 1555 3.07 LINK OD1 ASP A 101 CA CA A1117 1555 1555 2.33 LINK OD1 ASN A 103 CA CA A1116 1555 1555 2.31 LINK OD1 ASP A 104 CA CA A1116 1555 1555 2.40 LINK OD1 ASP A 104 CA CA A1117 1555 1555 2.68 LINK OD2 ASP A 104 CA CA A1117 1555 1555 2.49 LINK O GLY A 114 CA CA C1117 1555 1555 2.51 LINK O4 ARW A1115 CA CA A1116 1555 1555 2.50 LINK O3 ARW A1115 CA CA A1116 1555 1555 2.43 LINK O3 ARW A1115 CA CA A1117 1555 1555 2.51 LINK O2 ARW A1115 CA CA A1117 1555 1555 2.50 LINK CA CA A1116 O GLY C 114 1555 1555 2.46 LINK O ASN B 21 CA CA B1116 1555 1555 2.32 LINK OE2 GLU B 95 CA CA B1117 1555 1555 2.48 LINK OE1 GLU B 95 CA CA B1117 1555 1555 2.43 LINK OD1 ASP B 99 CA CA B1117 1555 1555 2.37 LINK OD1 ASP B 101 CA CA B1116 1555 1555 3.07 LINK OD2 ASP B 101 CA CA B1116 1555 1555 2.45 LINK OD1 ASP B 101 CA CA B1117 1555 1555 2.40 LINK OD1 ASN B 103 CA CA B1116 1555 1555 2.29 LINK OD1 ASP B 104 CA CA B1116 1555 1555 2.43 LINK OD1 ASP B 104 CA CA B1117 1555 1555 2.64 LINK OD2 ASP B 104 CA CA B1117 1555 1555 2.48 LINK O GLY B 114 CA CA D1117 1555 1555 2.41 LINK O3 ARW B1115 CA CA B1116 1555 1555 2.46 LINK O4 ARW B1115 CA CA B1116 1555 1555 2.54 LINK O2 ARW B1115 CA CA B1117 1555 1555 2.54 LINK O3 ARW B1115 CA CA B1117 1555 1555 2.52 LINK CA CA B1116 O GLY D 114 1555 1555 2.47 LINK O ASN C 21 CA CA C1117 1555 1555 2.35 LINK OE2 GLU C 95 CA CA C1116 1555 1555 2.41 LINK OE1 GLU C 95 CA CA C1116 1555 1555 2.47 LINK OD1 ASP C 99 CA CA C1116 1555 1555 2.29 LINK OD1 ASP C 101 CA CA C1116 1555 1555 2.33 LINK OD1 ASP C 101 CA CA C1117 1555 1555 3.02 LINK OD2 ASP C 101 CA CA C1117 1555 1555 2.42 LINK OD1 ASN C 103 CA CA C1117 1555 1555 2.30 LINK OD2 ASP C 104 CA CA C1116 1555 1555 2.42 LINK OD1 ASP C 104 CA CA C1116 1555 1555 2.64 LINK OD1 ASP C 104 CA CA C1117 1555 1555 2.35 LINK O2 ARW C1115 CA CA C1116 1555 1555 2.57 LINK O3 ARW C1115 CA CA C1116 1555 1555 2.42 LINK O3 ARW C1115 CA CA C1117 1555 1555 2.51 LINK O4 ARW C1115 CA CA C1117 1555 1555 2.51 LINK O ASN D 21 CA CA D1117 1555 1555 2.36 LINK OE1 GLU D 95 CA CA D1116 1555 1555 2.44 LINK OE2 GLU D 95 CA CA D1116 1555 1555 2.46 LINK OD1 ASP D 99 CA CA D1116 1555 1555 2.36 LINK OD1 ASP D 101 CA CA D1116 1555 1555 2.37 LINK OD1 ASP D 101 CA CA D1117 1555 1555 3.05 LINK OD2 ASP D 101 CA CA D1117 1555 1555 2.43 LINK OD1 ASN D 103 CA CA D1117 1555 1555 2.32 LINK OD2 ASP D 104 CA CA D1116 1555 1555 2.48 LINK OD1 ASP D 104 CA CA D1116 1555 1555 2.65 LINK OD1 ASP D 104 CA CA D1117 1555 1555 2.38 LINK O2 ARW D1115 CA CA D1116 1555 1555 2.52 LINK O3 ARW D1115 CA CA D1116 1555 1555 2.54 LINK O3 ARW D1115 CA CA D1117 1555 1555 2.45 LINK O4 ARW D1115 CA CA D1117 1555 1555 2.53 CISPEP 1 TRP A 111 PRO A 112 0 -2.48 CISPEP 2 TRP B 111 PRO B 112 0 -0.19 CISPEP 3 TRP C 111 PRO C 112 0 -2.10 CISPEP 4 TRP D 111 PRO D 112 0 -3.08 CRYST1 50.636 80.168 52.517 90.00 109.92 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019749 0.000000 0.007157 0.00000 SCALE2 0.000000 0.012474 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020253 0.00000