HEADER TRANSFERASE 14-APR-05 2BOV TITLE MOLECULAR RECOGNITION OF AN ADP-RIBOSYLATING CLOSTRIDIUM BOTULINUM C3 TITLE 2 EXOENZYME BY RALA GTPASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS-RELATED PROTEIN RAL-A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RALA; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: MONO-ADP-RIBOSYLTRANSFERASE C3; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: C3BOT1 EXOENZYME, EXOENZYME C3; COMPND 10 EC: 2.4.2.-; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-2T; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: CLOSTRIDIUM BOTULINUM; SOURCE 12 ORGANISM_TAXID: 1491; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 16 EXPRESSION_SYSTEM_VECTOR: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_PLASMID: PMAL KEYWDS C3BOT, EXOENZYME, RALA, GTPASE, ADP, RIBOSYLATING TOXIN, GTP-BINDING, KEYWDS 2 LIPOPROTEIN, PRENYLATION, GLYCOSYLTRANSFERASE, NAD, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.P.HOLBOURN,J.M.SUTTON,H.R.EVANS,C.C.SHONE,K.R.ACHARYA REVDAT 3 13-DEC-23 2BOV 1 LINK REVDAT 2 24-FEB-09 2BOV 1 VERSN REVDAT 1 15-APR-05 2BOV 0 SPRSDE 15-APR-05 2BOV 1WCA JRNL AUTH K.P.HOLBOURN,J.M.SUTTON,H.R.EVANS,C.C.SHONE,K.R.ACHARYA JRNL TITL MOLECULAR RECOGNITION OF AN ADP-RIBOSYLATING CLOSTRIDIUM JRNL TITL 2 BOTULINUM C3 EXOENZYME BY RALA GTPASE JRNL REF PROC.NATL.ACAD.SCI.USA V. 102 5357 2005 JRNL REFN ISSN 0027-8424 JRNL PMID 15809419 JRNL DOI 10.1073/PNAS.0501525102 REMARK 2 REMARK 2 RESOLUTION. 2.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 15430 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.900 REMARK 3 FREE R VALUE TEST SET COUNT : 915 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.009 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.66 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.83 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2385 REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE : 0.3120 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 151 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.025 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3024 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 261 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.98000 REMARK 3 B22 (A**2) : -1.44000 REMARK 3 B33 (A**2) : 2.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM SIGMAA (A) : 0.20 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.40 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.31 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.690 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.38 REMARK 3 BSOL : 40.33 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2BOV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-APR-05. REMARK 100 THE DEPOSITION ID IS D_1290023641. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.30 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15556 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.660 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 15.60 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.26000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1G24 AND 1UAD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH 7.3 12-15% ETHYLENE REMARK 280 GLYCOL 14-18% PEG 8000, PH 7.30 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.31450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.20000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.41800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.20000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.31450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.41800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 FUNCTION: ADP-RIBOSYLATION IN EUKARYOTIC RHO AND RAC REMARK 400 PROTEINS ON AN ASPARAGINE RESIDUE REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 ASN A 4 REMARK 465 LYS A 5 REMARK 465 PRO A 6 REMARK 465 LYS A 7 REMARK 465 GLY A 8 REMARK 465 GLN A 9 REMARK 465 ASN A 10 REMARK 465 GLU A 185 REMARK 465 LYS A 186 REMARK 465 ASN A 187 REMARK 465 GLY A 188 REMARK 465 LYS A 189 REMARK 465 LYS A 190 REMARK 465 LYS A 191 REMARK 465 ARG A 192 REMARK 465 LYS A 193 REMARK 465 SER A 194 REMARK 465 LEU A 195 REMARK 465 ALA A 196 REMARK 465 LYS A 197 REMARK 465 ARG A 198 REMARK 465 ILE A 199 REMARK 465 ARG A 200 REMARK 465 GLU A 201 REMARK 465 ARG A 202 REMARK 465 CYS A 203 REMARK 465 CYS A 204 REMARK 465 ILE A 205 REMARK 465 LEU A 206 REMARK 465 MET B 1001 REMARK 465 LYS B 1002 REMARK 465 GLY B 1003 REMARK 465 LEU B 1004 REMARK 465 ARG B 1005 REMARK 465 LYS B 1006 REMARK 465 SER B 1007 REMARK 465 ILE B 1008 REMARK 465 LEU B 1009 REMARK 465 CYS B 1010 REMARK 465 LEU B 1011 REMARK 465 VAL B 1012 REMARK 465 LEU B 1013 REMARK 465 SER B 1014 REMARK 465 ALA B 1015 REMARK 465 GLY B 1016 REMARK 465 VAL B 1017 REMARK 465 ILE B 1018 REMARK 465 ALA B 1019 REMARK 465 PRO B 1020 REMARK 465 VAL B 1021 REMARK 465 THR B 1022 REMARK 465 SER B 1023 REMARK 465 GLY B 1024 REMARK 465 MET B 1025 REMARK 465 ILE B 1026 REMARK 465 GLN B 1027 REMARK 465 SER B 1028 REMARK 465 PRO B 1029 REMARK 465 GLN B 1030 REMARK 465 LYS B 1031 REMARK 465 CYS B 1032 REMARK 465 TYR B 1033 REMARK 465 ALA B 1034 REMARK 465 TYR B 1035 REMARK 465 SER B 1036 REMARK 465 ILE B 1037 REMARK 465 ASN B 1038 REMARK 465 GLN B 1039 REMARK 465 LYS B 1040 REMARK 465 ALA B 1041 REMARK 465 TYR B 1042 REMARK 465 SER B 1043 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 184 CA C O CB CG CD CE REMARK 470 LYS A 184 NZ REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 ALA B 1210 REMARK 475 GLY B 1211 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 SER A 11 CB OG REMARK 480 GLU A 118 CB CG CD OE1 OE2 REMARK 480 ASN A 119 CB CG OD1 ND2 REMARK 480 GLN B 1054 CB CG CD OE1 NE2 REMARK 480 LYS B 1106 CB CG CD CE NZ REMARK 480 LYS B 1152 CB CG CD CE NZ REMARK 480 SER B 1181 CB OG REMARK 480 GLN B 1182 CB CG CD OE1 NE2 REMARK 480 ALA B 1184 CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 79 O PHE B 1100 3645 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 44 110.27 -33.69 REMARK 500 GLU A 116 63.25 34.88 REMARK 500 ASN A 119 51.56 -141.92 REMARK 500 LYS A 128 38.52 72.96 REMARK 500 LEU A 131 43.54 -103.63 REMARK 500 ASP A 182 -75.35 -56.73 REMARK 500 SER A 183 -61.30 -101.84 REMARK 500 SER B1082 51.67 -150.01 REMARK 500 LYS B1094 26.98 48.44 REMARK 500 ASN B1098 5.78 -69.27 REMARK 500 PHE B1183 -120.90 -115.48 REMARK 500 ALA B1184 -52.95 60.45 REMARK 500 PHE B1209 62.81 10.48 REMARK 500 GLN B1212 146.87 152.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2007 DISTANCE = 6.08 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1185 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 28 OG REMARK 620 2 GDP A1184 O2B 89.0 REMARK 620 3 HOH A2029 O 84.8 91.6 REMARK 620 4 HOH A2038 O 90.9 169.6 78.0 REMARK 620 5 HOH A2056 O 82.0 98.4 163.3 91.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1185 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A1184 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1G24 RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF EXOENZYME C3 FROM CLOSTRIDIUMBOTULINUM REMARK 900 RELATED ID: 1GZE RELATED DB: PDB REMARK 900 STRUCTURE OF THE CLOSTRIDIUM BOTULINUM C3 EXOENZYME (L177C MUTANT) REMARK 900 RELATED ID: 1GZF RELATED DB: PDB REMARK 900 STRUCTURE OF THE CLOSTRIDIUM BOTULINUM C3 EXOENZYME (WILD-TYPE) IN REMARK 900 COMPLEX WITH NAD REMARK 900 RELATED ID: 1UAD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE RALA-GPPNHP-SEC5 RAL-BINDINGDOMAIN COMPLEX REMARK 900 RELATED ID: 1UZI RELATED DB: PDB REMARK 900 C3 EXOENZYME FROM CLOSTRIDIUM BOTULINUM, TETRAGONAL FORM DBREF 2BOV A 1 206 UNP P11233 RALA_HUMAN 1 206 DBREF 2BOV B 1001 1251 UNP P15879 ARC3_CBDP 1 251 SEQRES 1 A 206 MET ALA ALA ASN LYS PRO LYS GLY GLN ASN SER LEU ALA SEQRES 2 A 206 LEU HIS LYS VAL ILE MET VAL GLY SER GLY GLY VAL GLY SEQRES 3 A 206 LYS SER ALA LEU THR LEU GLN PHE MET TYR ASP GLU PHE SEQRES 4 A 206 VAL GLU ASP TYR GLU PRO THR LYS ALA ASP SER TYR ARG SEQRES 5 A 206 LYS LYS VAL VAL LEU ASP GLY GLU GLU VAL GLN ILE ASP SEQRES 6 A 206 ILE LEU ASP THR ALA GLY GLN GLU ASP TYR ALA ALA ILE SEQRES 7 A 206 ARG ASP ASN TYR PHE ARG SER GLY GLU GLY PHE LEU CYS SEQRES 8 A 206 VAL PHE SER ILE THR GLU MET GLU SER PHE ALA ALA THR SEQRES 9 A 206 ALA ASP PHE ARG GLU GLN ILE LEU ARG VAL LYS GLU ASP SEQRES 10 A 206 GLU ASN VAL PRO PHE LEU LEU VAL GLY ASN LYS SER ASP SEQRES 11 A 206 LEU GLU ASP LYS ARG GLN VAL SER VAL GLU GLU ALA LYS SEQRES 12 A 206 ASN ARG ALA GLU GLN TRP ASN VAL ASN TYR VAL GLU THR SEQRES 13 A 206 SER ALA LYS THR ARG ALA ASN VAL ASP LYS VAL PHE PHE SEQRES 14 A 206 ASP LEU MET ARG GLU ILE ARG ALA ARG LYS MET GLU ASP SEQRES 15 A 206 SER LYS GLU LYS ASN GLY LYS LYS LYS ARG LYS SER LEU SEQRES 16 A 206 ALA LYS ARG ILE ARG GLU ARG CYS CYS ILE LEU SEQRES 1 B 251 MET LYS GLY LEU ARG LYS SER ILE LEU CYS LEU VAL LEU SEQRES 2 B 251 SER ALA GLY VAL ILE ALA PRO VAL THR SER GLY MET ILE SEQRES 3 B 251 GLN SER PRO GLN LYS CYS TYR ALA TYR SER ILE ASN GLN SEQRES 4 B 251 LYS ALA TYR SER ASN THR TYR GLN GLU PHE THR ASN ILE SEQRES 5 B 251 ASP GLN ALA LYS ALA TRP GLY ASN ALA GLN TYR LYS LYS SEQRES 6 B 251 TYR GLY LEU SER LYS SER GLU LYS GLU ALA ILE VAL SER SEQRES 7 B 251 TYR THR LYS SER ALA SER GLU ILE ASN GLY LYS LEU ARG SEQRES 8 B 251 GLN ASN LYS GLY VAL ILE ASN GLY PHE PRO SER ASN LEU SEQRES 9 B 251 ILE LYS GLN VAL GLU LEU LEU ASP LYS SER PHE ASN LYS SEQRES 10 B 251 MET LYS THR PRO GLU ASN ILE MET LEU PHE ARG GLY ASP SEQRES 11 B 251 ASP PRO ALA TYR LEU GLY THR GLU PHE GLN ASN THR LEU SEQRES 12 B 251 LEU ASN SER ASN GLY THR ILE ASN LYS THR ALA PHE GLU SEQRES 13 B 251 LYS ALA LYS ALA LYS PHE LEU ASN LYS ASP ARG LEU GLU SEQRES 14 B 251 TYR GLY TYR ILE SER THR SER LEU MET ASN VAL SER GLN SEQRES 15 B 251 PHE ALA GLY ARG PRO ILE ILE THR LYS PHE LYS VAL ALA SEQRES 16 B 251 LYS GLY SER LYS ALA GLY TYR ILE ASP PRO ILE SER ALA SEQRES 17 B 251 PHE ALA GLY GLN LEU GLU MET LEU LEU PRO ARG HIS SER SEQRES 18 B 251 THR TYR HIS ILE ASP ASP MET ARG LEU SER SER ASP GLY SEQRES 19 B 251 LYS GLN ILE ILE ILE THR ALA THR MET MET GLY THR ALA SEQRES 20 B 251 ILE ASN PRO LYS HET GDP A1184 28 HET MG A1185 1 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 GDP C10 H15 N5 O11 P2 FORMUL 4 MG MG 2+ FORMUL 5 HOH *261(H2 O) HELIX 1 1 GLY A 26 ASP A 37 1 12 HELIX 2 2 TYR A 75 GLY A 86 1 12 HELIX 3 3 GLU A 97 LYS A 115 1 19 HELIX 4 4 LEU A 131 ARG A 135 5 5 HELIX 5 5 SER A 138 ASN A 150 1 13 HELIX 6 6 ASN A 163 SER A 183 1 21 HELIX 7 7 ASN B 1051 GLY B 1067 1 17 HELIX 8 8 SER B 1069 SER B 1082 1 14 HELIX 9 9 SER B 1082 ASN B 1093 1 12 HELIX 10 10 PRO B 1101 PHE B 1115 1 15 HELIX 11 11 ASP B 1131 GLY B 1136 5 6 HELIX 12 12 GLY B 1136 GLN B 1140 5 5 HELIX 13 13 ASN B 1151 LEU B 1163 1 13 HELIX 14 14 ASP B 1204 SER B 1207 5 4 SHEET 1 AA 6 ASP A 49 LEU A 57 0 SHEET 2 AA 6 GLU A 60 ASP A 68 -1 O GLU A 60 N LEU A 57 SHEET 3 AA 6 LEU A 14 VAL A 20 1 O HIS A 15 N ASP A 65 SHEET 4 AA 6 GLY A 88 SER A 94 1 O GLY A 88 N ILE A 18 SHEET 5 AA 6 PHE A 122 ASN A 127 1 O LEU A 123 N CYS A 91 SHEET 6 AA 6 TYR A 153 THR A 156 1 O VAL A 154 N GLY A 126 SHEET 1 BA 5 ILE B1124 ASP B1130 0 SHEET 2 BA 5 ILE B1188 VAL B1194 -1 O ILE B1188 N ASP B1130 SHEET 3 BA 5 ILE B1237 THR B1246 1 O ILE B1237 N ILE B1189 SHEET 4 BA 5 SER B1221 LEU B1230 -1 O THR B1222 N MET B1244 SHEET 5 BA 5 ASP B1166 GLU B1169 -1 O ARG B1167 N TYR B1223 SHEET 1 BB 3 ILE B1173 SER B1176 0 SHEET 2 BB 3 GLU B1214 LEU B1217 -1 O MET B1215 N THR B1175 SHEET 3 BB 3 GLY B1201 TYR B1202 -1 O GLY B1201 N LEU B1216 LINK OG SER A 28 MG MG A1185 1555 1555 2.01 LINK O2B GDP A1184 MG MG A1185 1555 1555 2.06 LINK MG MG A1185 O HOH A2029 1555 1555 2.29 LINK MG MG A1185 O HOH A2038 1555 1555 2.00 LINK MG MG A1185 O HOH A2056 1555 1555 2.11 SITE 1 AC1 5 SER A 28 GDP A1184 HOH A2029 HOH A2038 SITE 2 AC1 5 HOH A2056 SITE 1 AC2 22 GLY A 24 VAL A 25 GLY A 26 LYS A 27 SITE 2 AC2 22 SER A 28 ALA A 29 PHE A 39 GLU A 41 SITE 3 AC2 22 ASP A 42 ASN A 127 LYS A 128 ASP A 130 SITE 4 AC2 22 LEU A 131 SER A 157 ALA A 158 LYS A 159 SITE 5 AC2 22 MG A1185 HOH A2029 HOH A2128 HOH A2129 SITE 6 AC2 22 HOH A2130 HOH A2131 CRYST1 56.629 90.836 100.400 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017659 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011009 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009960 0.00000