HEADER LECTIN 18-APR-05 2BP6 TITLE CRYSTAL STRUCTURE OF PSEUDOMONAS AERUGINOSA LECTIN (PA-IIL) COMPLEXED TITLE 2 WITH A-L-GALACTOPYRANOSIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PSEUDOMONAS AERUGINOSA LECTIN II; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: PA-IIL; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: PAO1; SOURCE 5 ATCC: 15692; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET25; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET25PAIIL KEYWDS LECTIN, GALACTOSE, CALCIUM, PSEUDOMONAS AERUGINOSA EXPDTA X-RAY DIFFRACTION AUTHOR C.D.SABIN,E.P.MITCHELL,M.WIMMEROVA,A.IMBERTY REVDAT 4 13-DEC-23 2BP6 1 HETSYN REVDAT 3 29-JUL-20 2BP6 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 24-FEB-09 2BP6 1 VERSN REVDAT 1 22-FEB-06 2BP6 0 JRNL AUTH C.D.SABIN,E.P.MITCHELL,M.POKARNA,C.GAUTIER,J.-P.UTILLE, JRNL AUTH 2 M.WIMMEROVA,A.IMBERTY JRNL TITL BINDING OF DIFFERENT MONOSACCHARIDES BY LECTIN PA-IIL FROM JRNL TITL 2 PSEUDOMAN AERUGINOSA: THERMODYNAMICS DATA CORRELATED WITH JRNL TITL 3 X-RAY STRUCTURES. JRNL REF FEBS LETT. V. 580 982 2006 JRNL REFN ISSN 0014-5793 JRNL PMID 16438968 JRNL DOI 10.1016/J.FEBSLET.2006.01.030 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.MITCHELL,C.D.SABIN,L.SNAJDROVA,M.POKORNA,S.PERRET, REMARK 1 AUTH 2 C.GAUTIER,C.HOFR,N.GILBOA-GARBER,J.KOCA,M.WIMMEROVA, REMARK 1 AUTH 3 A.IMBERTY REMARK 1 TITL HIGH AFFINITY FUCOSE BINDING OF PSEUDOMONAS AERUGINOSA REMARK 1 TITL 2 LECTIN PA-IIL: 1.0 A RESOLUTION CRYSTAL STRUCTURE OF THE REMARK 1 TITL 3 COMPLEX COMBINED WITH THERMODYNAMICS AND COMPUTATIONAL REMARK 1 TITL 4 CHEMISTRY APPROACHES REMARK 1 REF PROTEINS: STRUCT.,FUNCT., V. 58 735 2005 REMARK 1 REF 2 GENET. REMARK 1 REFN ISSN 0887-3585 REMARK 1 PMID 15573375 REMARK 1 DOI 10.1002/PROT.20330 REMARK 1 REFERENCE 2 REMARK 1 AUTH E.MITCHELL,C.HOULES,D.SUDAKEVITZ,M.WIMMEROVA,C.GAUTIER, REMARK 1 AUTH 2 S.PEREZ,A.M.WU,N.GILBOA-GARBER,A.IMBERTY REMARK 1 TITL STRUCTURAL BASIS FOR OLIGOSACCHARIDE-MEDIATED ADHESION OF REMARK 1 TITL 2 PSEUDOMONAS AERUGINOSA IN THE LUNGS OF CYSTIC FIBROSIS REMARK 1 TITL 3 PATIENTS REMARK 1 REF NAT.STRUCT.BIOL. V. 9 918 2002 REMARK 1 REFN ISSN 1072-8368 REMARK 1 PMID 12415289 REMARK 1 DOI 10.1038/NSB865 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 61594 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.143 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.166 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1934 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4426 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1860 REMARK 3 BIN FREE R VALUE SET COUNT : 154 REMARK 3 BIN FREE R VALUE : 0.2500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3308 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 430 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.28 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.064 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.064 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.038 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.992 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3532 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4874 ; 1.398 ; 1.938 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 483 ; 6.648 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 155 ;42.415 ;27.161 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 490 ;10.630 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;21.319 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 617 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2724 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1719 ; 0.221 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2582 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 341 ; 0.131 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 60 ; 0.194 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 32 ; 0.242 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2368 ; 0.776 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3817 ; 1.283 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1250 ; 2.022 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1057 ; 3.141 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2BP6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-APR-05. REMARK 100 THE DEPOSITION ID IS D_1290023671. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAR-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.932 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL DIAMOND REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63528 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 19.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 3.820 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.23000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.080 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1UZV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS HCL 0.1M, PH8.5, 1.75 M AMMONIUM REMARK 280 SULFATE, PH 8.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.39500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN D 46 O HOH D 2054 2.03 REMARK 500 O HOH A 2113 O HOH D 2053 2.12 REMARK 500 OG SER A 23 O HOH A 2022 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2052 O HOH B 2067 2557 2.02 REMARK 500 O HOH A 2105 O HOH D 2067 2647 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 86 -46.75 -138.32 REMARK 500 ASN B 46 36.14 -141.31 REMARK 500 GLU B 86 -40.37 -156.82 REMARK 500 GLU C 86 -41.38 -147.48 REMARK 500 ASN D 46 39.42 -141.51 REMARK 500 GLU D 86 -43.64 -147.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 802 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 21 O REMARK 620 2 ASP A 101 OD1 144.7 REMARK 620 3 ASP A 101 OD2 153.9 47.0 REMARK 620 4 ASN A 103 OD1 87.0 71.4 76.5 REMARK 620 5 ASP A 104 OD1 82.1 69.5 116.4 86.9 REMARK 620 6 GXL A 501 O3 131.8 63.2 72.7 134.6 78.1 REMARK 620 7 GXL A 501 O4 77.0 129.2 112.7 158.7 104.4 66.3 REMARK 620 8 GLY D 114 O 79.4 125.1 79.6 86.8 160.8 118.6 76.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 801 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 95 OE2 REMARK 620 2 GLU A 95 OE1 53.0 REMARK 620 3 ASP A 99 OD1 83.2 86.3 REMARK 620 4 ASP A 101 OD1 131.4 79.5 84.5 REMARK 620 5 ASP A 104 OD2 79.1 82.5 162.2 106.9 REMARK 620 6 ASP A 104 OD1 129.8 116.6 146.6 76.9 51.1 REMARK 620 7 GXL A 501 O2 89.1 141.1 98.7 139.3 81.8 78.9 REMARK 620 8 GXL A 501 O3 145.3 148.8 75.5 73.8 120.3 72.8 67.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 807 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 114 O REMARK 620 2 ASN D 21 O 79.4 REMARK 620 3 ASP D 101 OD2 79.6 152.8 REMARK 620 4 ASP D 101 OD1 124.6 142.7 47.0 REMARK 620 5 ASN D 103 OD1 86.4 87.1 74.5 68.7 REMARK 620 6 ASP D 104 OD1 160.7 82.0 116.4 69.6 87.8 REMARK 620 7 GXL D 504 O3 119.9 133.0 73.2 64.0 132.7 76.9 REMARK 620 8 GXL D 504 O4 77.6 78.6 113.3 130.3 160.2 103.5 66.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 804 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 21 O REMARK 620 2 ASP B 101 OD1 144.5 REMARK 620 3 ASP B 101 OD2 152.3 45.4 REMARK 620 4 ASN B 103 OD1 86.4 70.0 74.9 REMARK 620 5 ASP B 104 OD1 83.0 69.7 115.1 86.0 REMARK 620 6 GXL B 502 O3 133.2 63.7 73.3 133.6 78.1 REMARK 620 7 GXL B 502 O4 77.9 129.6 114.6 160.0 104.1 66.1 REMARK 620 8 GLY C 114 O 78.9 124.1 80.1 87.3 161.0 118.8 77.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 803 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 95 OE1 REMARK 620 2 GLU B 95 OE2 53.4 REMARK 620 3 ASP B 99 OD1 87.7 81.3 REMARK 620 4 ASP B 101 OD1 78.4 130.5 86.3 REMARK 620 5 ASP B 104 OD1 116.4 130.0 147.6 78.5 REMARK 620 6 ASP B 104 OD2 82.0 80.0 161.2 106.8 50.6 REMARK 620 7 GXL B 502 O3 148.2 144.6 74.9 74.1 73.4 121.0 REMARK 620 8 GXL B 502 O2 140.7 88.2 95.3 140.8 79.7 83.1 68.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 805 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 114 O REMARK 620 2 ASN C 21 O 79.1 REMARK 620 3 ASP C 101 OD1 125.1 144.7 REMARK 620 4 ASP C 101 OD2 80.3 153.7 46.2 REMARK 620 5 ASN C 103 OD1 87.9 87.4 70.2 75.6 REMARK 620 6 ASP C 104 OD1 160.2 81.7 70.3 116.4 86.4 REMARK 620 7 GXL C 503 O4 77.3 76.3 129.8 114.7 159.7 102.8 REMARK 620 8 GXL C 503 O3 118.6 131.8 63.6 73.1 133.8 78.2 66.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 806 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 95 OE2 REMARK 620 2 GLU C 95 OE1 53.4 REMARK 620 3 ASP C 99 OD1 83.2 85.9 REMARK 620 4 ASP C 101 OD1 132.0 79.8 83.7 REMARK 620 5 ASP C 104 OD1 129.0 116.4 147.3 77.8 REMARK 620 6 ASP C 104 OD2 79.2 81.7 162.2 106.5 50.4 REMARK 620 7 GXL C 503 O2 87.4 139.4 100.6 140.4 78.2 81.0 REMARK 620 8 GXL C 503 O3 143.8 150.3 75.9 75.0 73.4 120.4 68.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 808 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 95 OE2 REMARK 620 2 GLU D 95 OE1 54.2 REMARK 620 3 ASP D 99 OD1 85.0 81.9 REMARK 620 4 ASP D 101 OD1 79.7 133.2 87.3 REMARK 620 5 ASP D 104 OD1 117.8 129.1 148.1 76.3 REMARK 620 6 ASP D 104 OD2 84.4 78.7 160.6 106.7 50.8 REMARK 620 7 GXL D 504 O3 148.9 145.3 77.8 73.8 71.4 118.5 REMARK 620 8 GXL D 504 O2 140.8 87.3 97.2 139.4 79.2 81.1 67.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GZT RELATED DB: PDB REMARK 900 PSEUDOMONAS AERUGINOSA LECTIN II (PA-IIL) TOGETHER WITH FUCOSE REMARK 900 RELATED ID: 1OUR RELATED DB: PDB REMARK 900 LECB (PA-LII) IN COMPLEX WITH MANNOSE REMARK 900 RELATED ID: 1OUS RELATED DB: PDB REMARK 900 LECB (PA-LII) CALCIUM-FREE REMARK 900 RELATED ID: 1OUX RELATED DB: PDB REMARK 900 LECB (PA-LII) SUGAR-FREE REMARK 900 RELATED ID: 1OVP RELATED DB: PDB REMARK 900 LECB (PA-LII) IN COMPLEX WITH FRUCTOSE REMARK 900 RELATED ID: 1OVS RELATED DB: PDB REMARK 900 LECB (PA-LII) IN COMPLEX WITH CORE TRIMANNOSIDE REMARK 900 RELATED ID: 1OXC RELATED DB: PDB REMARK 900 LECB (PA-LII) IN COMPLEX WITH FUCOSE REMARK 900 RELATED ID: 1UZV RELATED DB: PDB REMARK 900 HIGH AFFINITY FUCOSE BINDING OF PSEUDOMONAS AERUGINOSA LECTIN II: REMARK 900 1.0 E CRYSTAL STRUCTURE OF THE COMPLEX REMARK 900 RELATED ID: 1W38 RELATED DB: PDB REMARK 900 PSEUDOMONAS AERUGINOSA LECTIN II (PA-IIL) COMPLEXED WITH LACTO-N- REMARK 900 NEO-FUCOPENTAOSE V ( LNPF V) REMARK 900 RELATED ID: 1W43 RELATED DB: PDB REMARK 900 STRUCTURE OF PSEUDOMONAS AERUGINOSA LECTIN II (PA-IIL)COMPLEXED REMARK 900 WITH LEWISA TRISACCHARIDE REMARK 900 RELATED ID: 1W8F RELATED DB: PDB REMARK 900 PSEUDOMONAS AERUGINOSA LECTIN II (PA-IIL) COMPLEXED WITH LACTO-N- REMARK 900 NEO-FUCOPENTAOSE V( LNPFV) REMARK 900 RELATED ID: 1W8H RELATED DB: PDB REMARK 900 STRUCTURE OF PSEUDOMONAS AERUGINOSA LECTIN II (PA-IIL)COMPLEXED REMARK 900 WITH LEWISA TRISACCHARIDE REMARK 900 RELATED ID: 2BOJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PSEUDOMONAS AERUGINOSA LECTIN (PA-IIL) REMARK 900 COMPLEXED WITH METHYL-B-D -ARABINOPYRANOSIDE DBREF 2BP6 A 1 114 UNP Q9HYN5 Q9HYN5_PSEAE 2 115 DBREF 2BP6 B 1 114 UNP Q9HYN5 Q9HYN5_PSEAE 2 115 DBREF 2BP6 C 1 114 UNP Q9HYN5 Q9HYN5_PSEAE 2 115 DBREF 2BP6 D 1 114 UNP Q9HYN5 Q9HYN5_PSEAE 2 115 SEQRES 1 A 114 ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR ARG SEQRES 2 A 114 PHE GLY VAL THR ALA PHE ALA ASN SER SER GLY THR GLN SEQRES 3 A 114 THR VAL ASN VAL LEU VAL ASN ASN GLU THR ALA ALA THR SEQRES 4 A 114 PHE SER GLY GLN SER THR ASN ASN ALA VAL ILE GLY THR SEQRES 5 A 114 GLN VAL LEU ASN SER GLY SER SER GLY LYS VAL GLN VAL SEQRES 6 A 114 GLN VAL SER VAL ASN GLY ARG PRO SER ASP LEU VAL SER SEQRES 7 A 114 ALA GLN VAL ILE LEU THR ASN GLU LEU ASN PHE ALA LEU SEQRES 8 A 114 VAL GLY SER GLU ASP GLY THR ASP ASN ASP TYR ASN ASP SEQRES 9 A 114 ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY SEQRES 1 B 114 ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR ARG SEQRES 2 B 114 PHE GLY VAL THR ALA PHE ALA ASN SER SER GLY THR GLN SEQRES 3 B 114 THR VAL ASN VAL LEU VAL ASN ASN GLU THR ALA ALA THR SEQRES 4 B 114 PHE SER GLY GLN SER THR ASN ASN ALA VAL ILE GLY THR SEQRES 5 B 114 GLN VAL LEU ASN SER GLY SER SER GLY LYS VAL GLN VAL SEQRES 6 B 114 GLN VAL SER VAL ASN GLY ARG PRO SER ASP LEU VAL SER SEQRES 7 B 114 ALA GLN VAL ILE LEU THR ASN GLU LEU ASN PHE ALA LEU SEQRES 8 B 114 VAL GLY SER GLU ASP GLY THR ASP ASN ASP TYR ASN ASP SEQRES 9 B 114 ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY SEQRES 1 C 114 ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR ARG SEQRES 2 C 114 PHE GLY VAL THR ALA PHE ALA ASN SER SER GLY THR GLN SEQRES 3 C 114 THR VAL ASN VAL LEU VAL ASN ASN GLU THR ALA ALA THR SEQRES 4 C 114 PHE SER GLY GLN SER THR ASN ASN ALA VAL ILE GLY THR SEQRES 5 C 114 GLN VAL LEU ASN SER GLY SER SER GLY LYS VAL GLN VAL SEQRES 6 C 114 GLN VAL SER VAL ASN GLY ARG PRO SER ASP LEU VAL SER SEQRES 7 C 114 ALA GLN VAL ILE LEU THR ASN GLU LEU ASN PHE ALA LEU SEQRES 8 C 114 VAL GLY SER GLU ASP GLY THR ASP ASN ASP TYR ASN ASP SEQRES 9 C 114 ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY SEQRES 1 D 114 ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR ARG SEQRES 2 D 114 PHE GLY VAL THR ALA PHE ALA ASN SER SER GLY THR GLN SEQRES 3 D 114 THR VAL ASN VAL LEU VAL ASN ASN GLU THR ALA ALA THR SEQRES 4 D 114 PHE SER GLY GLN SER THR ASN ASN ALA VAL ILE GLY THR SEQRES 5 D 114 GLN VAL LEU ASN SER GLY SER SER GLY LYS VAL GLN VAL SEQRES 6 D 114 GLN VAL SER VAL ASN GLY ARG PRO SER ASP LEU VAL SER SEQRES 7 D 114 ALA GLN VAL ILE LEU THR ASN GLU LEU ASN PHE ALA LEU SEQRES 8 D 114 VAL GLY SER GLU ASP GLY THR ASP ASN ASP TYR ASN ASP SEQRES 9 D 114 ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY HET GXL A 501 12 HET CA A 801 1 HET CA A 802 1 HET SO4 A 991 5 HET GXL B 502 12 HET CA B 803 1 HET CA B 804 1 HET SO4 B 990 5 HET GXL C 503 12 HET CA C 805 1 HET CA C 806 1 HET GXL D 504 12 HET CA D 807 1 HET CA D 808 1 HETNAM GXL ALPHA-L-GALACTOPYRANOSE HETNAM CA CALCIUM ION HETNAM SO4 SULFATE ION HETSYN GXL ALPHA-L-GALACTOSE; L-GALACTOSE; GALACTOSE FORMUL 5 GXL 4(C6 H12 O6) FORMUL 6 CA 8(CA 2+) FORMUL 8 SO4 2(O4 S 2-) FORMUL 19 HOH *430(H2 O) SHEET 1 AA 3 VAL A 5 THR A 7 0 SHEET 2 AA 3 LYS A 62 VAL A 69 -1 O VAL A 63 N PHE A 6 SHEET 3 AA 3 ARG A 13 VAL A 32 -1 O THR A 27 N SER A 68 SHEET 1 AB 3 VAL A 5 THR A 7 0 SHEET 2 AB 3 LYS A 62 VAL A 69 -1 O VAL A 63 N PHE A 6 SHEET 3 AB 3 ARG A 72 PRO A 73 -1 O ARG A 72 N VAL A 69 SHEET 1 BA 4 VAL B 5 THR B 7 0 SHEET 2 BA 4 LYS B 62 VAL B 69 -1 O VAL B 63 N PHE B 6 SHEET 3 BA 4 GLN B 26 VAL B 32 -1 O THR B 27 N SER B 68 SHEET 4 BA 4 GLU B 35 GLY B 42 -1 O GLU B 35 N VAL B 32 SHEET 1 BB 3 VAL B 5 THR B 7 0 SHEET 2 BB 3 LYS B 62 VAL B 69 -1 O VAL B 63 N PHE B 6 SHEET 3 BB 3 ARG B 72 PRO B 73 -1 O ARG B 72 N VAL B 69 SHEET 1 BC10 ALA B 48 ASN B 56 0 SHEET 2 BC10 ARG B 13 ALA B 20 -1 O PHE B 14 N LEU B 55 SHEET 3 BC10 ALA B 105 TRP B 111 -1 O VAL B 106 N PHE B 19 SHEET 4 BC10 LEU B 87 GLU B 95 -1 O ASN B 88 N TRP B 111 SHEET 5 BC10 ASP B 75 LEU B 83 -1 O ASP B 75 N GLU B 95 SHEET 6 BC10 ASP D 75 LEU D 83 -1 O GLN D 80 N ILE B 82 SHEET 7 BC10 LEU D 87 GLU D 95 -1 O LEU D 87 N LEU D 83 SHEET 8 BC10 ALA D 105 TRP D 111 -1 N ALA D 105 O SER D 94 SHEET 9 BC10 ARG D 13 ALA D 20 -1 O GLY D 15 N ASN D 110 SHEET 10 BC10 ALA D 48 ASN D 56 -1 O ALA D 48 N ALA D 20 SHEET 1 DA 4 VAL D 5 THR D 7 0 SHEET 2 DA 4 LYS D 62 VAL D 69 -1 O VAL D 63 N PHE D 6 SHEET 3 DA 4 GLN D 26 VAL D 32 -1 O THR D 27 N SER D 68 SHEET 4 DA 4 GLU D 35 GLY D 42 -1 O GLU D 35 N VAL D 32 SHEET 1 DB 3 VAL D 5 THR D 7 0 SHEET 2 DB 3 LYS D 62 VAL D 69 -1 O VAL D 63 N PHE D 6 SHEET 3 DB 3 ARG D 72 PRO D 73 -1 O ARG D 72 N VAL D 69 LINK O ASN A 21 CA CA A 802 1555 1555 2.36 LINK OE2 GLU A 95 CA CA A 801 1555 1555 2.39 LINK OE1 GLU A 95 CA CA A 801 1555 1555 2.48 LINK OD1 ASP A 99 CA CA A 801 1555 1555 2.36 LINK OD1 ASP A 101 CA CA A 801 1555 1555 2.36 LINK OD1 ASP A 101 CA CA A 802 1555 1555 3.03 LINK OD2 ASP A 101 CA CA A 802 1555 1555 2.43 LINK OD1 ASN A 103 CA CA A 802 1555 1555 2.34 LINK OD2 ASP A 104 CA CA A 801 1555 1555 2.40 LINK OD1 ASP A 104 CA CA A 801 1555 1555 2.65 LINK OD1 ASP A 104 CA CA A 802 1555 1555 2.37 LINK O GLY A 114 CA CA D 807 1555 1555 2.49 LINK O2 GXL A 501 CA CA A 801 1555 1555 2.50 LINK O3 GXL A 501 CA CA A 801 1555 1555 2.49 LINK O3 GXL A 501 CA CA A 802 1555 1555 2.47 LINK O4 GXL A 501 CA CA A 802 1555 1555 2.51 LINK CA CA A 802 O GLY D 114 1555 1555 2.47 LINK O ASN B 21 CA CA B 804 1555 1555 2.33 LINK OE1 GLU B 95 CA CA B 803 1555 1555 2.48 LINK OE2 GLU B 95 CA CA B 803 1555 1555 2.38 LINK OD1 ASP B 99 CA CA B 803 1555 1555 2.37 LINK OD1 ASP B 101 CA CA B 803 1555 1555 2.39 LINK OD1 ASP B 101 CA CA B 804 1555 1555 3.07 LINK OD2 ASP B 101 CA CA B 804 1555 1555 2.45 LINK OD1 ASN B 103 CA CA B 804 1555 1555 2.34 LINK OD1 ASP B 104 CA CA B 803 1555 1555 2.65 LINK OD2 ASP B 104 CA CA B 803 1555 1555 2.42 LINK OD1 ASP B 104 CA CA B 804 1555 1555 2.45 LINK O GLY B 114 CA CA C 805 1555 1555 2.43 LINK O3 GXL B 502 CA CA B 803 1555 1555 2.52 LINK O2 GXL B 502 CA CA B 803 1555 1555 2.50 LINK O3 GXL B 502 CA CA B 804 1555 1555 2.45 LINK O4 GXL B 502 CA CA B 804 1555 1555 2.47 LINK CA CA B 804 O GLY C 114 1555 1555 2.44 LINK O ASN C 21 CA CA C 805 1555 1555 2.37 LINK OE2 GLU C 95 CA CA C 806 1555 1555 2.40 LINK OE1 GLU C 95 CA CA C 806 1555 1555 2.47 LINK OD1 ASP C 99 CA CA C 806 1555 1555 2.38 LINK OD1 ASP C 101 CA CA C 805 1555 1555 3.03 LINK OD2 ASP C 101 CA CA C 805 1555 1555 2.45 LINK OD1 ASP C 101 CA CA C 806 1555 1555 2.35 LINK OD1 ASN C 103 CA CA C 805 1555 1555 2.37 LINK OD1 ASP C 104 CA CA C 805 1555 1555 2.39 LINK OD1 ASP C 104 CA CA C 806 1555 1555 2.66 LINK OD2 ASP C 104 CA CA C 806 1555 1555 2.45 LINK O4 GXL C 503 CA CA C 805 1555 1555 2.50 LINK O3 GXL C 503 CA CA C 805 1555 1555 2.49 LINK O2 GXL C 503 CA CA C 806 1555 1555 2.51 LINK O3 GXL C 503 CA CA C 806 1555 1555 2.47 LINK O ASN D 21 CA CA D 807 1555 1555 2.36 LINK OE2 GLU D 95 CA CA D 808 1555 1555 2.50 LINK OE1 GLU D 95 CA CA D 808 1555 1555 2.38 LINK OD1 ASP D 99 CA CA D 808 1555 1555 2.38 LINK OD2 ASP D 101 CA CA D 807 1555 1555 2.45 LINK OD1 ASP D 101 CA CA D 807 1555 1555 3.00 LINK OD1 ASP D 101 CA CA D 808 1555 1555 2.38 LINK OD1 ASN D 103 CA CA D 807 1555 1555 2.36 LINK OD1 ASP D 104 CA CA D 807 1555 1555 2.38 LINK OD1 ASP D 104 CA CA D 808 1555 1555 2.64 LINK OD2 ASP D 104 CA CA D 808 1555 1555 2.41 LINK O3 GXL D 504 CA CA D 807 1555 1555 2.44 LINK O4 GXL D 504 CA CA D 807 1555 1555 2.50 LINK O3 GXL D 504 CA CA D 808 1555 1555 2.49 LINK O2 GXL D 504 CA CA D 808 1555 1555 2.51 CISPEP 1 TRP A 111 PRO A 112 0 -4.68 CISPEP 2 TRP B 111 PRO B 112 0 -3.71 CISPEP 3 TRP C 111 PRO C 112 0 -3.55 CISPEP 4 TRP D 111 PRO D 112 0 -4.27 CRYST1 52.629 72.790 54.530 90.00 94.38 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019001 0.000000 0.001455 0.00000 SCALE2 0.000000 0.013738 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018392 0.00000