HEADER RECEPTOR 19-APR-05 2BPE TITLE STRUCTURE OF MURINE DECTIN-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DECTIN-1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: EXTRACELLULAR BETA-GLUCAN RECOGNITION DOMAIN RESIDUES 113- COMPND 5 244; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 CELL_LINE: RAW264.7; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS RECEPTOR, DECTIN-1, BETA-GLUCAN, FUNGAL RECOGNITION, C-TYPE LECTIN- KEYWDS 2 LIKE DOMAIN, CTLD EXPDTA X-RAY DIFFRACTION AUTHOR J.BROWN,C.A.O'CALLAGHAN,A.S.J.MARSHALL,R.J.C.GILBERT,C.SIEBOLD, AUTHOR 2 S.GORDON,G.D.BROWN,E.Y.JONES REVDAT 9 13-DEC-23 2BPE 1 LINK REVDAT 8 03-APR-19 2BPE 1 SOURCE REVDAT 7 12-JUL-17 2BPE 1 REVDAT 6 13-JUL-11 2BPE 1 VERSN REVDAT 5 24-FEB-09 2BPE 1 VERSN REVDAT 4 20-MAY-08 2BPE 1 VERSN REVDAT 3 05-JUN-07 2BPE 1 JRNL REVDAT 2 15-MAY-07 2BPE 1 JRNL REMARK REVDAT 1 31-AUG-06 2BPE 0 JRNL AUTH J.BROWN,C.A.O'CALLAGHAN,A.S.J.MARSHALL,R.J.C.GILBERT, JRNL AUTH 2 C.SIEBOLD,S.GORDON,G.D.BROWN,E.Y.JONES JRNL TITL STRUCTURE OF THE FUNGAL BETA-GLUCAN-BINDING IMMUNE RECEPTOR JRNL TITL 2 DECTIN-1: IMPLICATIONS FOR FUNCTION. JRNL REF PROTEIN SCI. V. 16 1042 2007 JRNL REFN ISSN 0961-8368 JRNL PMID 17473009 JRNL DOI 10.1110/PS.072791207 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 73.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 21569 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1165 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1211 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2630 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.3460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2086 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 200 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.12000 REMARK 3 B22 (A**2) : -0.12000 REMARK 3 B33 (A**2) : 0.17000 REMARK 3 B12 (A**2) : -0.06000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.191 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.177 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.119 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.791 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2206 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2984 ; 1.521 ; 1.901 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 254 ; 7.746 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 118 ;40.770 ;24.237 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 344 ;16.353 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;18.141 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 290 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1724 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1044 ; 0.215 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1458 ; 0.307 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 172 ; 0.188 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 110 ; 0.272 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 24 ; 0.243 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1305 ; 0.860 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2054 ; 1.523 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1061 ; 1.970 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 930 ; 3.024 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 117 A 244 4 REMARK 3 1 B 117 B 244 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1054 ; 0.36 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 B (A): 1054 ; 0.36 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1054 ; 0.44 ; 2.00 REMARK 3 MEDIUM THERMAL 1 B (A**2): 1054 ; 0.44 ; 2.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1248 A 1248 4 REMARK 3 1 B 1248 B 1248 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 2 A (A): 12 ; 0.07 ; 0.50 REMARK 3 MEDIUM POSITIONAL 2 B (A): 12 ; 0.07 ; 0.50 REMARK 3 MEDIUM THERMAL 2 A (A**2): 12 ; 0.39 ; 2.00 REMARK 3 MEDIUM THERMAL 2 B (A**2): 12 ; 0.39 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 117 A 245 REMARK 3 ORIGIN FOR THE GROUP (A): 15.1230 25.1120 37.5160 REMARK 3 T TENSOR REMARK 3 T11: 0.0421 T22: 0.2601 REMARK 3 T33: 0.1513 T12: -0.0347 REMARK 3 T13: 0.0653 T23: 0.1871 REMARK 3 L TENSOR REMARK 3 L11: 3.3625 L22: 1.5014 REMARK 3 L33: 3.0015 L12: -0.3838 REMARK 3 L13: -0.7527 L23: -0.8695 REMARK 3 S TENSOR REMARK 3 S11: -0.1408 S12: -0.1482 S13: -0.5633 REMARK 3 S21: 0.1445 S22: 0.4042 S23: 0.6218 REMARK 3 S31: 0.2878 S32: -0.8934 S33: -0.2635 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 117 B 244 REMARK 3 ORIGIN FOR THE GROUP (A): 9.3720 40.2850 31.2890 REMARK 3 T TENSOR REMARK 3 T11: -0.0269 T22: -0.0591 REMARK 3 T33: -0.1413 T12: 0.0366 REMARK 3 T13: 0.0086 T23: -0.0101 REMARK 3 L TENSOR REMARK 3 L11: 3.4510 L22: 1.4211 REMARK 3 L33: 3.3650 L12: -0.0999 REMARK 3 L13: 0.6420 L23: 1.0442 REMARK 3 S TENSOR REMARK 3 S11: 0.0142 S12: -0.0357 S13: -0.0619 REMARK 3 S21: 0.0819 S22: 0.0674 S23: -0.1090 REMARK 3 S31: 0.0103 S32: 0.0492 S33: -0.0816 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2BPE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-APR-05. REMARK 100 THE DEPOSITION ID IS D_1290023701. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-OCT-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.60 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : DIAMOND (111), GE(220) REMARK 200 OPTICS : SAGITALLY FOCUSING GE(220) AND A REMARK 200 MULTILAYER REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22768 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 11.10 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.86000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CASPR, AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2BPD REMARK 200 REMARK 200 REMARK: IN ADDITION TO THIS MODEL, CASPR GENERATED HOMOLOGY MODELS REMARK 200 AND TRUNCATED MODELS TO USE IN MOLECULAR REPLACEMENT SEARCH REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M SODIUM CHLORIDE, 0.1M SODIUM REMARK 280 ACETATE PH4.6, PH 4.60 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.45733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.22867 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 39.22867 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 78.45733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 1710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 112 REMARK 465 GLY A 113 REMARK 465 GLY A 114 REMARK 465 PHE A 115 REMARK 465 SER A 116 REMARK 465 HIS A 246 REMARK 465 HIS A 247 REMARK 465 HIS A 248 REMARK 465 HIS A 249 REMARK 465 HIS A 250 REMARK 465 HIS A 251 REMARK 465 MET B 112 REMARK 465 GLY B 113 REMARK 465 GLY B 114 REMARK 465 PHE B 115 REMARK 465 SER B 116 REMARK 465 HIS B 246 REMARK 465 HIS B 247 REMARK 465 HIS B 248 REMARK 465 HIS B 249 REMARK 465 HIS B 250 REMARK 465 HIS B 251 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 245 CA C O CB CG CD CE REMARK 470 LYS A 245 NZ REMARK 470 LYS B 245 CA C O CB CG CD CE REMARK 470 LYS B 245 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2092 O HOH A 2093 1.88 REMARK 500 OD1 ASN B 138 O HOH B 2022 2.04 REMARK 500 O HOH A 2059 O HOH A 2065 2.09 REMARK 500 O HOH A 2049 O HOH A 2104 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2065 O HOH B 2011 5665 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 122 -2.43 79.56 REMARK 500 PHE A 135 53.94 -90.34 REMARK 500 SER A 139 170.11 -55.31 REMARK 500 ASN A 208 55.46 100.55 REMARK 500 PRO A 211 -73.94 -28.75 REMARK 500 ASN B 122 -4.61 77.07 REMARK 500 PHE B 135 49.48 -88.58 REMARK 500 GLU B 188 55.31 -96.52 REMARK 500 ASN B 208 53.04 98.05 REMARK 500 PRO B 211 -67.60 -28.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 187 GLU A 188 145.24 REMARK 500 ASN A 208 ALA A 209 -146.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PG4 A 1248 REMARK 610 PG4 B 1248 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1245 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 156 O REMARK 620 2 ASP A 158 OD2 87.9 REMARK 620 3 GLU A 162 OE2 79.4 81.9 REMARK 620 4 GLU A 162 OE1 84.1 132.6 50.7 REMARK 620 5 GLU A 241 OE1 120.4 140.6 127.0 80.9 REMARK 620 6 GLU A 241 OE2 74.6 134.8 132.6 87.4 47.5 REMARK 620 7 HOH A2042 O 109.4 71.0 150.8 154.6 73.6 76.2 REMARK 620 8 HOH A2043 O 153.2 81.1 74.9 85.6 82.1 129.6 90.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1245 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS B 156 O REMARK 620 2 ASP B 158 OD2 84.6 REMARK 620 3 GLU B 162 OE2 79.1 82.4 REMARK 620 4 GLU B 162 OE1 82.7 132.6 50.4 REMARK 620 5 GLU B 241 OE1 121.1 140.2 129.0 83.8 REMARK 620 6 GLU B 241 OE2 73.2 132.8 130.8 85.8 48.7 REMARK 620 7 HOH B2035 O 105.1 67.1 148.3 160.1 76.4 79.1 REMARK 620 8 HOH B2044 O 152.7 84.6 74.7 86.5 82.3 130.9 93.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1245 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1246 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1247 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B1245 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B1246 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B1247 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A1248 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 B1248 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BPD RELATED DB: PDB REMARK 900 STRUCTURE OF MURINE DECTIN-1 REMARK 900 RELATED ID: 2BPH RELATED DB: PDB REMARK 900 STRUCTURE OF MURINE DECTIN-1 DBREF 2BPE A 112 112 PDB 2BPE 2BPE 112 112 DBREF 2BPE A 113 244 UNP Q6QLQ4 Q6QLQ4_MOUSE 113 244 DBREF 2BPE A 245 251 PDB 2BPE 2BPE 245 251 DBREF 2BPE B 112 112 PDB 2BPE 2BPE 112 112 DBREF 2BPE B 113 244 UNP Q6QLQ4 Q6QLQ4_MOUSE 113 244 DBREF 2BPE B 245 251 PDB 2BPE 2BPE 245 251 SEQRES 1 A 140 MET GLY GLY PHE SER GLN SER CYS LEU PRO ASN TRP ILE SEQRES 2 A 140 MET HIS GLY LYS SER CYS TYR LEU PHE SER PHE SER GLY SEQRES 3 A 140 ASN SER TRP TYR GLY SER LYS ARG HIS CYS SER GLN LEU SEQRES 4 A 140 GLY ALA HIS LEU LEU LYS ILE ASP ASN SER LYS GLU PHE SEQRES 5 A 140 GLU PHE ILE GLU SER GLN THR SER SER HIS ARG ILE ASN SEQRES 6 A 140 ALA PHE TRP ILE GLY LEU SER ARG ASN GLN SER GLU GLY SEQRES 7 A 140 PRO TRP PHE TRP GLU ASP GLY SER ALA PHE PHE PRO ASN SEQRES 8 A 140 SER PHE GLN VAL ARG ASN ALA VAL PRO GLN GLU SER LEU SEQRES 9 A 140 LEU HIS ASN CYS VAL TRP ILE HIS GLY SER GLU VAL TYR SEQRES 10 A 140 ASN GLN ILE CYS ASN THR SER SER TYR SER ILE CYS GLU SEQRES 11 A 140 LYS GLU LEU LYS HIS HIS HIS HIS HIS HIS SEQRES 1 B 140 MET GLY GLY PHE SER GLN SER CYS LEU PRO ASN TRP ILE SEQRES 2 B 140 MET HIS GLY LYS SER CYS TYR LEU PHE SER PHE SER GLY SEQRES 3 B 140 ASN SER TRP TYR GLY SER LYS ARG HIS CYS SER GLN LEU SEQRES 4 B 140 GLY ALA HIS LEU LEU LYS ILE ASP ASN SER LYS GLU PHE SEQRES 5 B 140 GLU PHE ILE GLU SER GLN THR SER SER HIS ARG ILE ASN SEQRES 6 B 140 ALA PHE TRP ILE GLY LEU SER ARG ASN GLN SER GLU GLY SEQRES 7 B 140 PRO TRP PHE TRP GLU ASP GLY SER ALA PHE PHE PRO ASN SEQRES 8 B 140 SER PHE GLN VAL ARG ASN ALA VAL PRO GLN GLU SER LEU SEQRES 9 B 140 LEU HIS ASN CYS VAL TRP ILE HIS GLY SER GLU VAL TYR SEQRES 10 B 140 ASN GLN ILE CYS ASN THR SER SER TYR SER ILE CYS GLU SEQRES 11 B 140 LYS GLU LEU LYS HIS HIS HIS HIS HIS HIS HET CA A1245 1 HET CL A1246 1 HET CL A1247 1 HET PG4 A1248 12 HET CA B1245 1 HET CL B1246 1 HET CL B1247 1 HET PG4 B1248 12 HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM PG4 TETRAETHYLENE GLYCOL FORMUL 3 CA 2(CA 2+) FORMUL 4 CL 4(CL 1-) FORMUL 6 PG4 2(C8 H18 O5) FORMUL 11 HOH *200(H2 O) HELIX 1 1 SER A 139 LEU A 150 1 12 HELIX 2 2 ASN A 159 SER A 171 1 13 HELIX 3 3 PRO A 211 LEU A 215 5 5 HELIX 4 4 SER B 139 LEU B 150 1 12 HELIX 5 5 ASN B 159 SER B 171 1 13 HELIX 6 6 VAL B 210 LEU B 215 5 6 SHEET 1 AA 4 ILE A 124 HIS A 126 0 SHEET 2 AA 4 LYS A 128 ASN A 138 -1 O SER A 129 N HIS A 126 SHEET 3 AA 4 SER A 236 LEU A 244 -1 O SER A 236 N ASN A 138 SHEET 4 AA 4 HIS A 153 LEU A 155 -1 O HIS A 153 N GLU A 241 SHEET 1 AB 6 ILE A 124 HIS A 126 0 SHEET 2 AB 6 LYS A 128 ASN A 138 -1 O SER A 129 N HIS A 126 SHEET 3 AB 6 SER A 236 LEU A 244 -1 O SER A 236 N ASN A 138 SHEET 4 AB 6 ALA A 177 ARG A 184 1 O ALA A 177 N TYR A 237 SHEET 5 AB 6 ASN A 218 HIS A 223 -1 O ASN A 218 N ARG A 184 SHEET 6 AB 6 GLU A 226 GLN A 230 -1 O GLU A 226 N HIS A 223 SHEET 1 BA 4 ILE B 124 HIS B 126 0 SHEET 2 BA 4 LYS B 128 ASN B 138 -1 O SER B 129 N HIS B 126 SHEET 3 BA 4 SER B 236 LEU B 244 -1 O SER B 236 N ASN B 138 SHEET 4 BA 4 HIS B 153 LEU B 155 -1 O HIS B 153 N GLU B 241 SHEET 1 BB 6 ILE B 124 HIS B 126 0 SHEET 2 BB 6 LYS B 128 ASN B 138 -1 O SER B 129 N HIS B 126 SHEET 3 BB 6 SER B 236 LEU B 244 -1 O SER B 236 N ASN B 138 SHEET 4 BB 6 ALA B 177 ARG B 184 1 O ALA B 177 N TYR B 237 SHEET 5 BB 6 ASN B 218 HIS B 223 -1 O ASN B 218 N ARG B 184 SHEET 6 BB 6 GLU B 226 GLN B 230 -1 O GLU B 226 N HIS B 223 SSBOND 1 CYS A 119 CYS A 130 1555 1555 2.06 SSBOND 2 CYS A 147 CYS A 240 1555 1555 2.08 SSBOND 3 CYS A 219 CYS A 232 1555 1555 2.05 SSBOND 4 CYS B 119 CYS B 130 1555 1555 2.06 SSBOND 5 CYS B 147 CYS B 240 1555 1555 2.07 SSBOND 6 CYS B 219 CYS B 232 1555 1555 2.04 LINK O LYS A 156 CA CA A1245 1555 1555 2.32 LINK OD2 ASP A 158 CA CA A1245 1555 1555 2.23 LINK OE2 GLU A 162 CA CA A1245 1555 1555 2.70 LINK OE1 GLU A 162 CA CA A1245 1555 1555 2.41 LINK OE1 GLU A 241 CA CA A1245 1555 1555 2.32 LINK OE2 GLU A 241 CA CA A1245 1555 1555 2.95 LINK CA CA A1245 O HOH A2042 1555 1555 2.52 LINK CA CA A1245 O HOH A2043 1555 1555 2.44 LINK O LYS B 156 CA CA B1245 1555 1555 2.38 LINK OD2 ASP B 158 CA CA B1245 1555 1555 2.25 LINK OE2 GLU B 162 CA CA B1245 1555 1555 2.69 LINK OE1 GLU B 162 CA CA B1245 1555 1555 2.41 LINK OE1 GLU B 241 CA CA B1245 1555 1555 2.46 LINK OE2 GLU B 241 CA CA B1245 1555 1555 2.78 LINK CA CA B1245 O HOH B2035 1555 1555 2.52 LINK CA CA B1245 O HOH B2044 1555 1555 2.63 SITE 1 AC1 6 LYS A 156 ASP A 158 GLU A 162 GLU A 241 SITE 2 AC1 6 HOH A2042 HOH A2043 SITE 1 AC2 5 LYS A 144 LEU A 154 GLU A 194 HOH A2029 SITE 2 AC2 5 HOH A2075 SITE 1 AC3 4 ASN A 159 ASN A 202 SER A 203 HOH A2041 SITE 1 AC4 6 LYS B 156 ASP B 158 GLU B 162 GLU B 241 SITE 2 AC4 6 HOH B2035 HOH B2044 SITE 1 AC5 6 PHE A 204 GLN A 205 ARG A 207 PHE B 204 SITE 2 AC5 6 GLN B 205 ARG B 207 SITE 1 AC6 4 LYS B 144 LEU B 154 GLU B 194 HOH B2028 SITE 1 AC7 14 GLN A 117 SER A 118 CYS A 119 PRO A 121 SITE 2 AC7 14 HOH A2108 PHE B 135 SER B 171 SER B 172 SITE 3 AC7 14 HIS B 173 ARG B 174 ILE B 175 ASN B 176 SITE 4 AC7 14 PHE B 178 TYR B 237 SITE 1 AC8 15 PHE A 135 SER A 171 SER A 172 HIS A 173 SITE 2 AC8 15 ARG A 174 ILE A 175 ASN A 176 PHE A 178 SITE 3 AC8 15 TYR A 237 GLN B 117 SER B 118 CYS B 119 SITE 4 AC8 15 PRO B 121 HOH B2091 HOH B2092 CRYST1 84.685 84.685 117.686 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011808 0.006818 0.000000 0.00000 SCALE2 0.000000 0.013635 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008497 0.00000 MTRIX1 1 -1.000000 0.000630 0.001000 42.29076 1 MTRIX2 1 -0.000630 -1.000000 0.000920 73.35347 1 MTRIX3 1 0.001000 0.000920 1.000000 -0.05533 1