data_2BPF # _entry.id 2BPF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2BPF pdb_00002bpf 10.2210/pdb2bpf/pdb RCSB PDE011 ? ? WWPDB D_1000177850 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1994-12-14 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.value' 16 4 'Structure model' '_struct_conn.pdbx_dist_value' 17 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 18 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 19 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 20 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 21 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 22 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 23 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 24 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 25 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 26 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 27 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 28 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 29 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 30 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 31 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2BPF _pdbx_database_status.recvd_initial_deposition_date 1994-05-19 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2BPG _pdbx_database_related.details ;2BPF STRUCTURE IS VERY SIMILAR TO THE STRUCTURE IN PDB ENTRY 2BPG WITH THE FOLLOWING DIFFERENCES: (1) THE STRUCTURE IN THIS ENTRY CRYSTALLIZED IN SPACE GROUP P 61, WHEREAS THE STRUCTURE IN ENTRY 2BPG CRYSTALLIZED IN SPACE GROUP P 21. (2) THE STRUCTURE IN THIS ENTRY WAS DETERMINED AT 2.9 ANGSTROMS RESOLUTION, WHEREAS THE STRUCTURE IN ENTRY 2BPG WAS DETERMINED AT 3.6 ANGSTROMS RESOLUTION. (3) THE STRUCTURE IN THIS ENTRY HAS ONE MOLECULE IN THE ASYMMETRIC UNIT, WHEREAS THE STRUCTURE IN ENTRY 2BPG HAS TWO MOLECULES IN THE ASYMMETRIC UNIT. (4) THE POSITION OF THE 8 KD DOMAIN DIFFERS IN THE TWO ENTRIES. (5) THE STRUCTURE IN THIS ENTRY INCLUDES TWO CATALYTICALLY IMPORTANT MG++ IONS, WHEREAS THE STRUCTURE IN ENTRY 2BPG WAS NOT DETERMINED AT A HIGH ENOUGH RESOLUTION TO SEE EVIDENCE OF THE MG++ IONS IN THE ELECTRON DENSITY MAPS OF THE ACTIVE SITE, SO THEY ARE NOT INCLUDED IN THAT ENTRY. ; _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pelletier, H.' 1 'Sawaya, M.R.' 2 'Kumar, A.' 3 'Wilson, S.H.' 4 'Kraut, J.' 5 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Structures of ternary complexes of rat DNA polymerase beta, a DNA template-primer, and ddCTP.' Science 264 1891 1903 1994 SCIEAS US 0036-8075 0038 ? 7516580 ? 1 'Crystal Structure of Rat DNA Polymerase Beta: Evidence for a Common Polymerase Mechanism' Science 264 1930 ? 1994 SCIEAS US 0036-8075 0038 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pelletier, H.' 1 ? primary 'Sawaya, M.R.' 2 ? primary 'Kumar, A.' 3 ? primary 'Wilson, S.H.' 4 ? primary 'Kraut, J.' 5 ? 1 'Sawaya, M.R.' 6 ? 1 'Pelletier, H.' 7 ? 1 'Kumar, A.' 8 ? 1 'Wilson, S.H.' 9 ? 1 'Kraut, J.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*GP*GP*CP*GP*CP*CP*G)-3') ; 2468.617 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*CP*GP*GP*CP*GP*CP*C)-3') ; 2099.387 1 ? ? ? ? 3 polymer man 'PROTEIN (DNA POLYMERASE BETA (E.C.2.7.7.7))' 38388.762 1 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 5 non-polymer syn ;2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE ; 451.158 1 ? ? ? ? 6 water nat water 18.015 31 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DG)(DG)(DG)(DC)(DG)(DC)(DC)(DG)' GGGCGCCG T ? 2 polydeoxyribonucleotide no no '(DC)(DG)(DG)(DC)(DG)(DC)(DC)' CGGCGCC P ? 3 'polypeptide(L)' no no ;MSKRKAPQETLNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATG KLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNEDKLNHHQRIGLKYFEDFEKRIPREEMLQMQD IVLNEVKKLDPEYIATVCGSFRRGAESSGDMDVLLTHPNFTSESSKQPKLLHRVVEQLQKVRFITDTLSKGETKFMGVCQ LPSENDENEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEQDIF DYIQWRYREPKDRSE ; ;MSKRKAPQETLNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATG KLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNEDKLNHHQRIGLKYFEDFEKRIPREEMLQMQD IVLNEVKKLDPEYIATVCGSFRRGAESSGDMDVLLTHPNFTSESSKQPKLLHRVVEQLQKVRFITDTLSKGETKFMGVCQ LPSENDENEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEQDIF DYIQWRYREPKDRSE ; A ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'MAGNESIUM ION' MG 5 ;2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE ; DCT 6 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DG n 1 3 DG n 1 4 DC n 1 5 DG n 1 6 DC n 1 7 DC n 1 8 DG n 2 1 DC n 2 2 DG n 2 3 DG n 2 4 DC n 2 5 DG n 2 6 DC n 2 7 DC n 3 1 MET n 3 2 SER n 3 3 LYS n 3 4 ARG n 3 5 LYS n 3 6 ALA n 3 7 PRO n 3 8 GLN n 3 9 GLU n 3 10 THR n 3 11 LEU n 3 12 ASN n 3 13 GLY n 3 14 GLY n 3 15 ILE n 3 16 THR n 3 17 ASP n 3 18 MET n 3 19 LEU n 3 20 VAL n 3 21 GLU n 3 22 LEU n 3 23 ALA n 3 24 ASN n 3 25 PHE n 3 26 GLU n 3 27 LYS n 3 28 ASN n 3 29 VAL n 3 30 SER n 3 31 GLN n 3 32 ALA n 3 33 ILE n 3 34 HIS n 3 35 LYS n 3 36 TYR n 3 37 ASN n 3 38 ALA n 3 39 TYR n 3 40 ARG n 3 41 LYS n 3 42 ALA n 3 43 ALA n 3 44 SER n 3 45 VAL n 3 46 ILE n 3 47 ALA n 3 48 LYS n 3 49 TYR n 3 50 PRO n 3 51 HIS n 3 52 LYS n 3 53 ILE n 3 54 LYS n 3 55 SER n 3 56 GLY n 3 57 ALA n 3 58 GLU n 3 59 ALA n 3 60 LYS n 3 61 LYS n 3 62 LEU n 3 63 PRO n 3 64 GLY n 3 65 VAL n 3 66 GLY n 3 67 THR n 3 68 LYS n 3 69 ILE n 3 70 ALA n 3 71 GLU n 3 72 LYS n 3 73 ILE n 3 74 ASP n 3 75 GLU n 3 76 PHE n 3 77 LEU n 3 78 ALA n 3 79 THR n 3 80 GLY n 3 81 LYS n 3 82 LEU n 3 83 ARG n 3 84 LYS n 3 85 LEU n 3 86 GLU n 3 87 LYS n 3 88 ILE n 3 89 ARG n 3 90 GLN n 3 91 ASP n 3 92 ASP n 3 93 THR n 3 94 SER n 3 95 SER n 3 96 SER n 3 97 ILE n 3 98 ASN n 3 99 PHE n 3 100 LEU n 3 101 THR n 3 102 ARG n 3 103 VAL n 3 104 THR n 3 105 GLY n 3 106 ILE n 3 107 GLY n 3 108 PRO n 3 109 SER n 3 110 ALA n 3 111 ALA n 3 112 ARG n 3 113 LYS n 3 114 LEU n 3 115 VAL n 3 116 ASP n 3 117 GLU n 3 118 GLY n 3 119 ILE n 3 120 LYS n 3 121 THR n 3 122 LEU n 3 123 GLU n 3 124 ASP n 3 125 LEU n 3 126 ARG n 3 127 LYS n 3 128 ASN n 3 129 GLU n 3 130 ASP n 3 131 LYS n 3 132 LEU n 3 133 ASN n 3 134 HIS n 3 135 HIS n 3 136 GLN n 3 137 ARG n 3 138 ILE n 3 139 GLY n 3 140 LEU n 3 141 LYS n 3 142 TYR n 3 143 PHE n 3 144 GLU n 3 145 ASP n 3 146 PHE n 3 147 GLU n 3 148 LYS n 3 149 ARG n 3 150 ILE n 3 151 PRO n 3 152 ARG n 3 153 GLU n 3 154 GLU n 3 155 MET n 3 156 LEU n 3 157 GLN n 3 158 MET n 3 159 GLN n 3 160 ASP n 3 161 ILE n 3 162 VAL n 3 163 LEU n 3 164 ASN n 3 165 GLU n 3 166 VAL n 3 167 LYS n 3 168 LYS n 3 169 LEU n 3 170 ASP n 3 171 PRO n 3 172 GLU n 3 173 TYR n 3 174 ILE n 3 175 ALA n 3 176 THR n 3 177 VAL n 3 178 CYS n 3 179 GLY n 3 180 SER n 3 181 PHE n 3 182 ARG n 3 183 ARG n 3 184 GLY n 3 185 ALA n 3 186 GLU n 3 187 SER n 3 188 SER n 3 189 GLY n 3 190 ASP n 3 191 MET n 3 192 ASP n 3 193 VAL n 3 194 LEU n 3 195 LEU n 3 196 THR n 3 197 HIS n 3 198 PRO n 3 199 ASN n 3 200 PHE n 3 201 THR n 3 202 SER n 3 203 GLU n 3 204 SER n 3 205 SER n 3 206 LYS n 3 207 GLN n 3 208 PRO n 3 209 LYS n 3 210 LEU n 3 211 LEU n 3 212 HIS n 3 213 ARG n 3 214 VAL n 3 215 VAL n 3 216 GLU n 3 217 GLN n 3 218 LEU n 3 219 GLN n 3 220 LYS n 3 221 VAL n 3 222 ARG n 3 223 PHE n 3 224 ILE n 3 225 THR n 3 226 ASP n 3 227 THR n 3 228 LEU n 3 229 SER n 3 230 LYS n 3 231 GLY n 3 232 GLU n 3 233 THR n 3 234 LYS n 3 235 PHE n 3 236 MET n 3 237 GLY n 3 238 VAL n 3 239 CYS n 3 240 GLN n 3 241 LEU n 3 242 PRO n 3 243 SER n 3 244 GLU n 3 245 ASN n 3 246 ASP n 3 247 GLU n 3 248 ASN n 3 249 GLU n 3 250 TYR n 3 251 PRO n 3 252 HIS n 3 253 ARG n 3 254 ARG n 3 255 ILE n 3 256 ASP n 3 257 ILE n 3 258 ARG n 3 259 LEU n 3 260 ILE n 3 261 PRO n 3 262 LYS n 3 263 ASP n 3 264 GLN n 3 265 TYR n 3 266 TYR n 3 267 CYS n 3 268 GLY n 3 269 VAL n 3 270 LEU n 3 271 TYR n 3 272 PHE n 3 273 THR n 3 274 GLY n 3 275 SER n 3 276 ASP n 3 277 ILE n 3 278 PHE n 3 279 ASN n 3 280 LYS n 3 281 ASN n 3 282 MET n 3 283 ARG n 3 284 ALA n 3 285 HIS n 3 286 ALA n 3 287 LEU n 3 288 GLU n 3 289 LYS n 3 290 GLY n 3 291 PHE n 3 292 THR n 3 293 ILE n 3 294 ASN n 3 295 GLU n 3 296 TYR n 3 297 THR n 3 298 ILE n 3 299 ARG n 3 300 PRO n 3 301 LEU n 3 302 GLY n 3 303 VAL n 3 304 THR n 3 305 GLY n 3 306 VAL n 3 307 ALA n 3 308 GLY n 3 309 GLU n 3 310 PRO n 3 311 LEU n 3 312 PRO n 3 313 VAL n 3 314 ASP n 3 315 SER n 3 316 GLU n 3 317 GLN n 3 318 ASP n 3 319 ILE n 3 320 PHE n 3 321 ASP n 3 322 TYR n 3 323 ILE n 3 324 GLN n 3 325 TRP n 3 326 ARG n 3 327 TYR n 3 328 ARG n 3 329 GLU n 3 330 PRO n 3 331 LYS n 3 332 ASP n 3 333 ARG n 3 334 SER n 3 335 GLU n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Norway rat' _entity_src_gen.gene_src_genus Rattus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Rattus norvegicus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10116 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DCT 'DNA linking' n ;2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE ; ? 'C9 H16 N3 O12 P3' 451.158 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 4 4 DG G T . n A 1 2 DG 2 5 5 DG G T . n A 1 3 DG 3 6 6 DG G T . n A 1 4 DC 4 7 7 DC C T . n A 1 5 DG 5 8 8 DG G T . n A 1 6 DC 6 9 9 DC C T . n A 1 7 DC 7 10 10 DC C T . n A 1 8 DG 8 11 11 DG G T . n B 2 1 DC 1 1 1 DC C P . n B 2 2 DG 2 2 2 DG G P . n B 2 3 DG 3 3 3 DG G P . n B 2 4 DC 4 4 4 DC C P . n B 2 5 DG 5 5 5 DG G P . n B 2 6 DC 6 6 6 DC C P . n B 2 7 DC 7 7 7 DC C P . n C 3 1 MET 1 1 ? ? ? A . n C 3 2 SER 2 2 ? ? ? A . n C 3 3 LYS 3 3 ? ? ? A . n C 3 4 ARG 4 4 ? ? ? A . n C 3 5 LYS 5 5 ? ? ? A . n C 3 6 ALA 6 6 ? ? ? A . n C 3 7 PRO 7 7 ? ? ? A . n C 3 8 GLN 8 8 ? ? ? A . n C 3 9 GLU 9 9 9 GLU GLU A . n C 3 10 THR 10 10 10 THR THR A . n C 3 11 LEU 11 11 11 LEU LEU A . n C 3 12 ASN 12 12 12 ASN ASN A . n C 3 13 GLY 13 13 13 GLY GLY A . n C 3 14 GLY 14 14 14 GLY GLY A . n C 3 15 ILE 15 15 15 ILE ILE A . n C 3 16 THR 16 16 16 THR THR A . n C 3 17 ASP 17 17 17 ASP ASP A . n C 3 18 MET 18 18 18 MET MET A . n C 3 19 LEU 19 19 19 LEU LEU A . n C 3 20 VAL 20 20 20 VAL VAL A . n C 3 21 GLU 21 21 21 GLU GLU A . n C 3 22 LEU 22 22 22 LEU LEU A . n C 3 23 ALA 23 23 23 ALA ALA A . n C 3 24 ASN 24 24 24 ASN ASN A . n C 3 25 PHE 25 25 25 PHE PHE A . n C 3 26 GLU 26 26 26 GLU GLU A . n C 3 27 LYS 27 27 27 LYS LYS A . n C 3 28 ASN 28 28 28 ASN ASN A . n C 3 29 VAL 29 29 29 VAL VAL A . n C 3 30 SER 30 30 30 SER SER A . n C 3 31 GLN 31 31 31 GLN GLN A . n C 3 32 ALA 32 32 32 ALA ALA A . n C 3 33 ILE 33 33 33 ILE ILE A . n C 3 34 HIS 34 34 34 HIS HIS A . n C 3 35 LYS 35 35 35 LYS LYS A . n C 3 36 TYR 36 36 36 TYR TYR A . n C 3 37 ASN 37 37 37 ASN ASN A . n C 3 38 ALA 38 38 38 ALA ALA A . n C 3 39 TYR 39 39 39 TYR TYR A . n C 3 40 ARG 40 40 40 ARG ARG A . n C 3 41 LYS 41 41 41 LYS LYS A . n C 3 42 ALA 42 42 42 ALA ALA A . n C 3 43 ALA 43 43 43 ALA ALA A . n C 3 44 SER 44 44 44 SER SER A . n C 3 45 VAL 45 45 45 VAL VAL A . n C 3 46 ILE 46 46 46 ILE ILE A . n C 3 47 ALA 47 47 47 ALA ALA A . n C 3 48 LYS 48 48 48 LYS LYS A . n C 3 49 TYR 49 49 49 TYR TYR A . n C 3 50 PRO 50 50 50 PRO PRO A . n C 3 51 HIS 51 51 51 HIS HIS A . n C 3 52 LYS 52 52 52 LYS LYS A . n C 3 53 ILE 53 53 53 ILE ILE A . n C 3 54 LYS 54 54 54 LYS LYS A . n C 3 55 SER 55 55 55 SER SER A . n C 3 56 GLY 56 56 56 GLY GLY A . n C 3 57 ALA 57 57 57 ALA ALA A . n C 3 58 GLU 58 58 58 GLU GLU A . n C 3 59 ALA 59 59 59 ALA ALA A . n C 3 60 LYS 60 60 60 LYS LYS A . n C 3 61 LYS 61 61 61 LYS LYS A . n C 3 62 LEU 62 62 62 LEU LEU A . n C 3 63 PRO 63 63 63 PRO PRO A . n C 3 64 GLY 64 64 64 GLY GLY A . n C 3 65 VAL 65 65 65 VAL VAL A . n C 3 66 GLY 66 66 66 GLY GLY A . n C 3 67 THR 67 67 67 THR THR A . n C 3 68 LYS 68 68 68 LYS LYS A . n C 3 69 ILE 69 69 69 ILE ILE A . n C 3 70 ALA 70 70 70 ALA ALA A . n C 3 71 GLU 71 71 71 GLU GLU A . n C 3 72 LYS 72 72 72 LYS LYS A . n C 3 73 ILE 73 73 73 ILE ILE A . n C 3 74 ASP 74 74 74 ASP ASP A . n C 3 75 GLU 75 75 75 GLU GLU A . n C 3 76 PHE 76 76 76 PHE PHE A . n C 3 77 LEU 77 77 77 LEU LEU A . n C 3 78 ALA 78 78 78 ALA ALA A . n C 3 79 THR 79 79 79 THR THR A . n C 3 80 GLY 80 80 80 GLY GLY A . n C 3 81 LYS 81 81 81 LYS LYS A . n C 3 82 LEU 82 82 82 LEU LEU A . n C 3 83 ARG 83 83 83 ARG ARG A . n C 3 84 LYS 84 84 84 LYS LYS A . n C 3 85 LEU 85 85 85 LEU LEU A . n C 3 86 GLU 86 86 86 GLU GLU A . n C 3 87 LYS 87 87 87 LYS LYS A . n C 3 88 ILE 88 88 88 ILE ILE A . n C 3 89 ARG 89 89 89 ARG ARG A . n C 3 90 GLN 90 90 90 GLN GLN A . n C 3 91 ASP 91 91 91 ASP ASP A . n C 3 92 ASP 92 92 92 ASP ASP A . n C 3 93 THR 93 93 93 THR THR A . n C 3 94 SER 94 94 94 SER SER A . n C 3 95 SER 95 95 95 SER SER A . n C 3 96 SER 96 96 96 SER SER A . n C 3 97 ILE 97 97 97 ILE ILE A . n C 3 98 ASN 98 98 98 ASN ASN A . n C 3 99 PHE 99 99 99 PHE PHE A . n C 3 100 LEU 100 100 100 LEU LEU A . n C 3 101 THR 101 101 101 THR THR A . n C 3 102 ARG 102 102 102 ARG ARG A . n C 3 103 VAL 103 103 103 VAL VAL A . n C 3 104 THR 104 104 104 THR THR A . n C 3 105 GLY 105 105 105 GLY GLY A . n C 3 106 ILE 106 106 106 ILE ILE A . n C 3 107 GLY 107 107 107 GLY GLY A . n C 3 108 PRO 108 108 108 PRO PRO A . n C 3 109 SER 109 109 109 SER SER A . n C 3 110 ALA 110 110 110 ALA ALA A . n C 3 111 ALA 111 111 111 ALA ALA A . n C 3 112 ARG 112 112 112 ARG ARG A . n C 3 113 LYS 113 113 113 LYS LYS A . n C 3 114 LEU 114 114 114 LEU LEU A . n C 3 115 VAL 115 115 115 VAL VAL A . n C 3 116 ASP 116 116 116 ASP ASP A . n C 3 117 GLU 117 117 117 GLU GLU A . n C 3 118 GLY 118 118 118 GLY GLY A . n C 3 119 ILE 119 119 119 ILE ILE A . n C 3 120 LYS 120 120 120 LYS LYS A . n C 3 121 THR 121 121 121 THR THR A . n C 3 122 LEU 122 122 122 LEU LEU A . n C 3 123 GLU 123 123 123 GLU GLU A . n C 3 124 ASP 124 124 124 ASP ASP A . n C 3 125 LEU 125 125 125 LEU LEU A . n C 3 126 ARG 126 126 126 ARG ARG A . n C 3 127 LYS 127 127 127 LYS LYS A . n C 3 128 ASN 128 128 128 ASN ASN A . n C 3 129 GLU 129 129 129 GLU GLU A . n C 3 130 ASP 130 130 130 ASP ASP A . n C 3 131 LYS 131 131 131 LYS LYS A . n C 3 132 LEU 132 132 132 LEU LEU A . n C 3 133 ASN 133 133 133 ASN ASN A . n C 3 134 HIS 134 134 134 HIS HIS A . n C 3 135 HIS 135 135 135 HIS HIS A . n C 3 136 GLN 136 136 136 GLN GLN A . n C 3 137 ARG 137 137 137 ARG ARG A . n C 3 138 ILE 138 138 138 ILE ILE A . n C 3 139 GLY 139 139 139 GLY GLY A . n C 3 140 LEU 140 140 140 LEU LEU A . n C 3 141 LYS 141 141 141 LYS LYS A . n C 3 142 TYR 142 142 142 TYR TYR A . n C 3 143 PHE 143 143 143 PHE PHE A . n C 3 144 GLU 144 144 144 GLU GLU A . n C 3 145 ASP 145 145 145 ASP ASP A . n C 3 146 PHE 146 146 146 PHE PHE A . n C 3 147 GLU 147 147 147 GLU GLU A . n C 3 148 LYS 148 148 148 LYS LYS A . n C 3 149 ARG 149 149 149 ARG ARG A . n C 3 150 ILE 150 150 150 ILE ILE A . n C 3 151 PRO 151 151 151 PRO PRO A . n C 3 152 ARG 152 152 152 ARG ARG A . n C 3 153 GLU 153 153 153 GLU GLU A . n C 3 154 GLU 154 154 154 GLU GLU A . n C 3 155 MET 155 155 155 MET MET A . n C 3 156 LEU 156 156 156 LEU LEU A . n C 3 157 GLN 157 157 157 GLN GLN A . n C 3 158 MET 158 158 158 MET MET A . n C 3 159 GLN 159 159 159 GLN GLN A . n C 3 160 ASP 160 160 160 ASP ASP A . n C 3 161 ILE 161 161 161 ILE ILE A . n C 3 162 VAL 162 162 162 VAL VAL A . n C 3 163 LEU 163 163 163 LEU LEU A . n C 3 164 ASN 164 164 164 ASN ASN A . n C 3 165 GLU 165 165 165 GLU GLU A . n C 3 166 VAL 166 166 166 VAL VAL A . n C 3 167 LYS 167 167 167 LYS LYS A . n C 3 168 LYS 168 168 168 LYS LYS A . n C 3 169 LEU 169 169 169 LEU LEU A . n C 3 170 ASP 170 170 170 ASP ASP A . n C 3 171 PRO 171 171 171 PRO PRO A . n C 3 172 GLU 172 172 172 GLU GLU A . n C 3 173 TYR 173 173 173 TYR TYR A . n C 3 174 ILE 174 174 174 ILE ILE A . n C 3 175 ALA 175 175 175 ALA ALA A . n C 3 176 THR 176 176 176 THR THR A . n C 3 177 VAL 177 177 177 VAL VAL A . n C 3 178 CYS 178 178 178 CYS CYS A . n C 3 179 GLY 179 179 179 GLY GLY A . n C 3 180 SER 180 180 180 SER SER A . n C 3 181 PHE 181 181 181 PHE PHE A . n C 3 182 ARG 182 182 182 ARG ARG A . n C 3 183 ARG 183 183 183 ARG ARG A . n C 3 184 GLY 184 184 184 GLY GLY A . n C 3 185 ALA 185 185 185 ALA ALA A . n C 3 186 GLU 186 186 186 GLU GLU A . n C 3 187 SER 187 187 187 SER SER A . n C 3 188 SER 188 188 188 SER SER A . n C 3 189 GLY 189 189 189 GLY GLY A . n C 3 190 ASP 190 190 190 ASP ASP A . n C 3 191 MET 191 191 191 MET MET A . n C 3 192 ASP 192 192 192 ASP ASP A . n C 3 193 VAL 193 193 193 VAL VAL A . n C 3 194 LEU 194 194 194 LEU LEU A . n C 3 195 LEU 195 195 195 LEU LEU A . n C 3 196 THR 196 196 196 THR THR A . n C 3 197 HIS 197 197 197 HIS HIS A . n C 3 198 PRO 198 198 198 PRO PRO A . n C 3 199 ASN 199 199 199 ASN ASN A . n C 3 200 PHE 200 200 200 PHE PHE A . n C 3 201 THR 201 201 201 THR THR A . n C 3 202 SER 202 202 202 SER SER A . n C 3 203 GLU 203 203 203 GLU GLU A . n C 3 204 SER 204 204 204 SER SER A . n C 3 205 SER 205 205 205 SER SER A . n C 3 206 LYS 206 206 206 LYS LYS A . n C 3 207 GLN 207 207 207 GLN GLN A . n C 3 208 PRO 208 208 208 PRO PRO A . n C 3 209 LYS 209 209 209 LYS LYS A . n C 3 210 LEU 210 210 210 LEU LEU A . n C 3 211 LEU 211 211 211 LEU LEU A . n C 3 212 HIS 212 212 212 HIS HIS A . n C 3 213 ARG 213 213 213 ARG ARG A . n C 3 214 VAL 214 214 214 VAL VAL A . n C 3 215 VAL 215 215 215 VAL VAL A . n C 3 216 GLU 216 216 216 GLU GLU A . n C 3 217 GLN 217 217 217 GLN GLN A . n C 3 218 LEU 218 218 218 LEU LEU A . n C 3 219 GLN 219 219 219 GLN GLN A . n C 3 220 LYS 220 220 220 LYS LYS A . n C 3 221 VAL 221 221 221 VAL VAL A . n C 3 222 ARG 222 222 222 ARG ARG A . n C 3 223 PHE 223 223 223 PHE PHE A . n C 3 224 ILE 224 224 224 ILE ILE A . n C 3 225 THR 225 225 225 THR THR A . n C 3 226 ASP 226 226 226 ASP ASP A . n C 3 227 THR 227 227 227 THR THR A . n C 3 228 LEU 228 228 228 LEU LEU A . n C 3 229 SER 229 229 229 SER SER A . n C 3 230 LYS 230 230 230 LYS LYS A . n C 3 231 GLY 231 231 231 GLY GLY A . n C 3 232 GLU 232 232 232 GLU GLU A . n C 3 233 THR 233 233 233 THR THR A . n C 3 234 LYS 234 234 234 LYS LYS A . n C 3 235 PHE 235 235 235 PHE PHE A . n C 3 236 MET 236 236 236 MET MET A . n C 3 237 GLY 237 237 237 GLY GLY A . n C 3 238 VAL 238 238 238 VAL VAL A . n C 3 239 CYS 239 239 239 CYS CYS A . n C 3 240 GLN 240 240 240 GLN GLN A . n C 3 241 LEU 241 241 241 LEU LEU A . n C 3 242 PRO 242 242 242 PRO PRO A . n C 3 243 SER 243 243 243 SER SER A . n C 3 244 GLU 244 244 244 GLU GLU A . n C 3 245 ASN 245 245 245 ASN ASN A . n C 3 246 ASP 246 246 ? ? ? A . n C 3 247 GLU 247 247 ? ? ? A . n C 3 248 ASN 248 248 ? ? ? A . n C 3 249 GLU 249 249 249 GLU GLU A . n C 3 250 TYR 250 250 250 TYR TYR A . n C 3 251 PRO 251 251 251 PRO PRO A . n C 3 252 HIS 252 252 252 HIS HIS A . n C 3 253 ARG 253 253 253 ARG ARG A . n C 3 254 ARG 254 254 254 ARG ARG A . n C 3 255 ILE 255 255 255 ILE ILE A . n C 3 256 ASP 256 256 256 ASP ASP A . n C 3 257 ILE 257 257 257 ILE ILE A . n C 3 258 ARG 258 258 258 ARG ARG A . n C 3 259 LEU 259 259 259 LEU LEU A . n C 3 260 ILE 260 260 260 ILE ILE A . n C 3 261 PRO 261 261 261 PRO PRO A . n C 3 262 LYS 262 262 262 LYS LYS A . n C 3 263 ASP 263 263 263 ASP ASP A . n C 3 264 GLN 264 264 264 GLN GLN A . n C 3 265 TYR 265 265 265 TYR TYR A . n C 3 266 TYR 266 266 266 TYR TYR A . n C 3 267 CYS 267 267 267 CYS CYS A . n C 3 268 GLY 268 268 268 GLY GLY A . n C 3 269 VAL 269 269 269 VAL VAL A . n C 3 270 LEU 270 270 270 LEU LEU A . n C 3 271 TYR 271 271 271 TYR TYR A . n C 3 272 PHE 272 272 272 PHE PHE A . n C 3 273 THR 273 273 273 THR THR A . n C 3 274 GLY 274 274 274 GLY GLY A . n C 3 275 SER 275 275 275 SER SER A . n C 3 276 ASP 276 276 276 ASP ASP A . n C 3 277 ILE 277 277 277 ILE ILE A . n C 3 278 PHE 278 278 278 PHE PHE A . n C 3 279 ASN 279 279 279 ASN ASN A . n C 3 280 LYS 280 280 280 LYS LYS A . n C 3 281 ASN 281 281 281 ASN ASN A . n C 3 282 MET 282 282 282 MET MET A . n C 3 283 ARG 283 283 283 ARG ARG A . n C 3 284 ALA 284 284 284 ALA ALA A . n C 3 285 HIS 285 285 285 HIS HIS A . n C 3 286 ALA 286 286 286 ALA ALA A . n C 3 287 LEU 287 287 287 LEU LEU A . n C 3 288 GLU 288 288 288 GLU GLU A . n C 3 289 LYS 289 289 289 LYS LYS A . n C 3 290 GLY 290 290 290 GLY GLY A . n C 3 291 PHE 291 291 291 PHE PHE A . n C 3 292 THR 292 292 292 THR THR A . n C 3 293 ILE 293 293 293 ILE ILE A . n C 3 294 ASN 294 294 294 ASN ASN A . n C 3 295 GLU 295 295 295 GLU GLU A . n C 3 296 TYR 296 296 296 TYR TYR A . n C 3 297 THR 297 297 297 THR THR A . n C 3 298 ILE 298 298 298 ILE ILE A . n C 3 299 ARG 299 299 299 ARG ARG A . n C 3 300 PRO 300 300 300 PRO PRO A . n C 3 301 LEU 301 301 301 LEU LEU A . n C 3 302 GLY 302 302 302 GLY GLY A . n C 3 303 VAL 303 303 303 VAL VAL A . n C 3 304 THR 304 304 304 THR THR A . n C 3 305 GLY 305 305 305 GLY GLY A . n C 3 306 VAL 306 306 306 VAL VAL A . n C 3 307 ALA 307 307 307 ALA ALA A . n C 3 308 GLY 308 308 308 GLY GLY A . n C 3 309 GLU 309 309 309 GLU GLU A . n C 3 310 PRO 310 310 310 PRO PRO A . n C 3 311 LEU 311 311 311 LEU LEU A . n C 3 312 PRO 312 312 312 PRO PRO A . n C 3 313 VAL 313 313 313 VAL VAL A . n C 3 314 ASP 314 314 314 ASP ASP A . n C 3 315 SER 315 315 315 SER SER A . n C 3 316 GLU 316 316 316 GLU GLU A . n C 3 317 GLN 317 317 317 GLN GLN A . n C 3 318 ASP 318 318 318 ASP ASP A . n C 3 319 ILE 319 319 319 ILE ILE A . n C 3 320 PHE 320 320 320 PHE PHE A . n C 3 321 ASP 321 321 321 ASP ASP A . n C 3 322 TYR 322 322 322 TYR TYR A . n C 3 323 ILE 323 323 323 ILE ILE A . n C 3 324 GLN 324 324 324 GLN GLN A . n C 3 325 TRP 325 325 325 TRP TRP A . n C 3 326 ARG 326 326 326 ARG ARG A . n C 3 327 TYR 327 327 327 TYR TYR A . n C 3 328 ARG 328 328 328 ARG ARG A . n C 3 329 GLU 329 329 329 GLU GLU A . n C 3 330 PRO 330 330 330 PRO PRO A . n C 3 331 LYS 331 331 331 LYS LYS A . n C 3 332 ASP 332 332 332 ASP ASP A . n C 3 333 ARG 333 333 333 ARG ARG A . n C 3 334 SER 334 334 334 SER SER A . n C 3 335 GLU 335 335 335 GLU GLU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG 1 339 339 MG MG A . E 4 MG 1 340 340 MG MG A . F 5 DCT 1 338 338 DCT DCT A . G 6 HOH 1 410 410 HOH HOH T . G 6 HOH 2 417 417 HOH HOH T . H 6 HOH 1 401 401 HOH HOH P . H 6 HOH 2 411 411 HOH HOH P . I 6 HOH 1 400 400 HOH HOH A . I 6 HOH 2 402 402 HOH HOH A . I 6 HOH 3 403 403 HOH HOH A . I 6 HOH 4 404 404 HOH HOH A . I 6 HOH 5 405 405 HOH HOH A . I 6 HOH 6 406 406 HOH HOH A . I 6 HOH 7 407 407 HOH HOH A . I 6 HOH 8 408 408 HOH HOH A . I 6 HOH 9 409 409 HOH HOH A . I 6 HOH 10 412 412 HOH HOH A . I 6 HOH 11 413 413 HOH HOH A . I 6 HOH 12 414 414 HOH HOH A . I 6 HOH 13 415 415 HOH HOH A . I 6 HOH 14 416 416 HOH HOH A . I 6 HOH 15 418 418 HOH HOH A . I 6 HOH 16 419 419 HOH HOH A . I 6 HOH 17 420 420 HOH HOH A . I 6 HOH 18 421 421 HOH HOH A . I 6 HOH 19 422 422 HOH HOH A . I 6 HOH 20 423 423 HOH HOH A . I 6 HOH 21 424 424 HOH HOH A . I 6 HOH 22 425 425 HOH HOH A . I 6 HOH 23 426 426 HOH HOH A . I 6 HOH 24 427 427 HOH HOH A . I 6 HOH 25 428 428 HOH HOH A . I 6 HOH 26 429 429 HOH HOH A . I 6 HOH 27 430 430 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 P DC 7 ? "O3'" ? B DC 7 "O3'" 2 1 Y 1 A PHE 25 ? CG ? C PHE 25 CG 3 1 Y 1 A PHE 25 ? CD1 ? C PHE 25 CD1 4 1 Y 1 A PHE 25 ? CD2 ? C PHE 25 CD2 5 1 Y 1 A PHE 25 ? CE1 ? C PHE 25 CE1 6 1 Y 1 A PHE 25 ? CE2 ? C PHE 25 CE2 7 1 Y 1 A PHE 25 ? CZ ? C PHE 25 CZ 8 1 Y 1 A ASN 28 ? CG ? C ASN 28 CG 9 1 Y 1 A ASN 28 ? OD1 ? C ASN 28 OD1 10 1 Y 1 A ASN 28 ? ND2 ? C ASN 28 ND2 11 1 Y 1 A LYS 52 ? CG ? C LYS 52 CG 12 1 Y 1 A LYS 52 ? CD ? C LYS 52 CD 13 1 Y 1 A LYS 52 ? CE ? C LYS 52 CE 14 1 Y 1 A LYS 52 ? NZ ? C LYS 52 NZ 15 1 Y 1 A SER 55 ? OG ? C SER 55 OG 16 1 Y 1 A LYS 60 ? CG ? C LYS 60 CG 17 1 Y 1 A LYS 60 ? CD ? C LYS 60 CD 18 1 Y 1 A LYS 60 ? CE ? C LYS 60 CE 19 1 Y 1 A LYS 60 ? NZ ? C LYS 60 NZ 20 1 Y 1 A LYS 68 ? CG ? C LYS 68 CG 21 1 Y 1 A LYS 68 ? CD ? C LYS 68 CD 22 1 Y 1 A LYS 68 ? CE ? C LYS 68 CE 23 1 Y 1 A LYS 68 ? NZ ? C LYS 68 NZ 24 1 Y 1 A GLU 71 ? CG ? C GLU 71 CG 25 1 Y 1 A GLU 71 ? CD ? C GLU 71 CD 26 1 Y 1 A GLU 71 ? OE1 ? C GLU 71 OE1 27 1 Y 1 A GLU 71 ? OE2 ? C GLU 71 OE2 28 1 Y 1 A LYS 72 ? CG ? C LYS 72 CG 29 1 Y 1 A LYS 72 ? CD ? C LYS 72 CD 30 1 Y 1 A LYS 72 ? CE ? C LYS 72 CE 31 1 Y 1 A LYS 72 ? NZ ? C LYS 72 NZ 32 1 Y 1 A LYS 81 ? CG ? C LYS 81 CG 33 1 Y 1 A LYS 81 ? CD ? C LYS 81 CD 34 1 Y 1 A LYS 81 ? CE ? C LYS 81 CE 35 1 Y 1 A LYS 81 ? NZ ? C LYS 81 NZ 36 1 Y 1 A LEU 82 ? CG ? C LEU 82 CG 37 1 Y 1 A LEU 82 ? CD1 ? C LEU 82 CD1 38 1 Y 1 A LEU 82 ? CD2 ? C LEU 82 CD2 39 1 Y 1 A GLN 90 ? CG ? C GLN 90 CG 40 1 Y 1 A GLN 90 ? CD ? C GLN 90 CD 41 1 Y 1 A GLN 90 ? OE1 ? C GLN 90 OE1 42 1 Y 1 A GLN 90 ? NE2 ? C GLN 90 NE2 43 1 Y 1 A SER 109 ? OG ? C SER 109 OG 44 1 Y 1 A ILE 119 ? CG1 ? C ILE 119 CG1 45 1 Y 1 A ILE 119 ? CG2 ? C ILE 119 CG2 46 1 Y 1 A ILE 119 ? CD1 ? C ILE 119 CD1 47 1 Y 1 A GLU 123 ? CG ? C GLU 123 CG 48 1 Y 1 A GLU 123 ? CD ? C GLU 123 CD 49 1 Y 1 A GLU 123 ? OE1 ? C GLU 123 OE1 50 1 Y 1 A GLU 123 ? OE2 ? C GLU 123 OE2 51 1 Y 1 A LYS 220 ? CG ? C LYS 220 CG 52 1 Y 1 A LYS 220 ? CD ? C LYS 220 CD 53 1 Y 1 A LYS 220 ? CE ? C LYS 220 CE 54 1 Y 1 A LYS 220 ? NZ ? C LYS 220 NZ 55 1 Y 1 A SER 243 ? OG ? C SER 243 OG 56 1 Y 1 A GLU 244 ? CG ? C GLU 244 CG 57 1 Y 1 A GLU 244 ? CD ? C GLU 244 CD 58 1 Y 1 A GLU 244 ? OE1 ? C GLU 244 OE1 59 1 Y 1 A GLU 244 ? OE2 ? C GLU 244 OE2 60 1 Y 1 A ASN 245 ? CG ? C ASN 245 CG 61 1 Y 1 A ASN 245 ? OD1 ? C ASN 245 OD1 62 1 Y 1 A ASN 245 ? ND2 ? C ASN 245 ND2 63 1 Y 1 A LYS 280 ? CG ? C LYS 280 CG 64 1 Y 1 A LYS 280 ? CD ? C LYS 280 CD 65 1 Y 1 A LYS 280 ? CE ? C LYS 280 CE 66 1 Y 1 A LYS 280 ? NZ ? C LYS 280 NZ # _software.name TNT _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 2BPF _cell.length_a 94.900 _cell.length_b 94.900 _cell.length_c 117.600 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BPF _symmetry.space_group_name_H-M 'P 61' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 # _exptl.entry_id 2BPF _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.54 _exptl_crystal.density_percent_sol 65.23 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.50 _exptl_crystal_grow.pdbx_details 'pH 6.50' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MES ? ? ? 1 3 1 MGCL2 ? ? ? 1 4 1 'LI SULFATE' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 2BPF _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high 2.900 _reflns.number_obs 13281 _reflns.number_all 53583 _reflns.percent_possible_obs 99.000 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 2BPF _refine.ls_number_reflns_obs 13281 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.000 _refine.ls_d_res_high 2.900 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.1930000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2543 _refine_hist.pdbx_number_atoms_nucleic_acid 305 _refine_hist.pdbx_number_atoms_ligand 29 _refine_hist.number_atoms_solvent 31 _refine_hist.number_atoms_total 2908 _refine_hist.d_res_high 2.900 _refine_hist.d_res_low 20.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function t_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ? t_angle_deg ? ? ? ? 'X-RAY DIFFRACTION' ? t_dihedral_angle_d 23.56 ? ? ? 'X-RAY DIFFRACTION' ? t_incorr_chiral_ct ? ? ? ? 'X-RAY DIFFRACTION' ? t_pseud_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_trig_c_planes 0.014 ? ? ? 'X-RAY DIFFRACTION' ? t_gen_planes 0.005 ? ? ? 'X-RAY DIFFRACTION' ? t_it ? ? ? ? 'X-RAY DIFFRACTION' ? t_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 2BPF _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2BPF _struct.title 'STRUCTURES OF TERNARY COMPLEXES OF RAT DNA POLYMERASE BETA, A DNA TEMPLATE-PRIMER, AND DDCTP' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2BPF _struct_keywords.pdbx_keywords TRANSFERASE/DNA _struct_keywords.text 'PROTEIN-DNA COMPLEX, TRANSFERASE-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? G N N 6 ? H N N 6 ? I N N 6 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code 1 UNP DPOB_RAT P06766 3 1 ? ? 2 PDB 2BPF 2BPF 1 ? ? ? 3 PDB 2BPF 2BPF 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2BPF A 2 ? 335 ? P06766 1 ? 334 ? 2 335 2 2 2BPF T 1 ? 8 ? 2BPF 4 ? 11 ? 4 11 3 3 2BPF P 1 ? 7 ? 2BPF 1 ? 7 ? 1 7 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN C 12 ? VAL C 29 ? ASN A 12 VAL A 29 1 ? 18 HELX_P HELX_P2 2 ALA C 32 ? TYR C 49 ? ALA A 32 TYR A 49 1 ? 18 HELX_P HELX_P3 3 SER C 55 ? LEU C 62 ? SER A 55 LEU A 62 1 ? 8 HELX_P HELX_P4 4 GLY C 66 ? THR C 79 ? GLY A 66 THR A 79 1 ? 14 HELX_P HELX_P5 5 LEU C 82 ? ILE C 88 ? LEU A 82 ILE A 88 1 ? 7 HELX_P HELX_P6 6 ARG C 89 ? ASP C 91 ? ARG A 89 ASP A 91 5 ? 3 HELX_P HELX_P7 7 ASP C 92 ? ARG C 102 ? ASP A 92 ARG A 102 1 ? 11 HELX_P HELX_P8 8 GLY C 107 ? GLU C 117 ? GLY A 107 GLU A 117 1 ? 11 HELX_P HELX_P9 9 THR C 121 ? ASN C 128 ? THR A 121 ASN A 128 1 ? 8 HELX_P HELX_P10 10 GLU C 129 ? LEU C 132 ? GLU A 129 LEU A 132 5 ? 4 HELX_P HELX_P11 11 ASN C 133 ? TYR C 142 ? ASN A 133 TYR A 142 1 ? 10 HELX_P HELX_P12 12 TYR C 142 ? GLU C 147 ? TYR A 142 GLU A 147 1 ? 6 HELX_P HELX_P13 13 ARG C 152 ? ASP C 170 ? ARG A 152 ASP A 170 1 ? 19 HELX_P HELX_P14 14 CYS C 178 ? ARG C 183 ? CYS A 178 ARG A 183 1 ? 6 HELX_P HELX_P15 15 PRO C 208 ? LYS C 220 ? PRO A 208 LYS A 220 1 ? 13 HELX_P HELX_P16 16 PRO C 261 ? ASP C 263 ? PRO A 261 ASP A 263 5 ? 3 HELX_P HELX_P17 17 GLN C 264 ? GLY C 274 ? GLN A 264 GLY A 274 1 ? 11 HELX_P HELX_P18 18 SER C 275 ? LYS C 289 ? SER A 275 LYS A 289 1 ? 15 HELX_P HELX_P19 19 SER C 315 ? ILE C 323 ? SER A 315 ILE A 323 1 ? 9 HELX_P HELX_P20 20 GLU C 329 ? ARG C 333 ? GLU A 329 ARG A 333 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? C ASP 190 O ? ? ? 1_555 D MG . MG ? ? A ASP 190 A MG 339 1_555 ? ? ? ? ? ? ? 3.085 ? ? metalc2 metalc ? ? C ASP 190 OD1 ? ? ? 1_555 D MG . MG ? ? A ASP 190 A MG 339 1_555 ? ? ? ? ? ? ? 2.075 ? ? metalc3 metalc ? ? C ASP 190 OD2 ? ? ? 1_555 E MG . MG ? ? A ASP 190 A MG 340 1_555 ? ? ? ? ? ? ? 2.033 ? ? metalc4 metalc ? ? C ASP 192 OD2 ? ? ? 1_555 D MG . MG ? ? A ASP 192 A MG 339 1_555 ? ? ? ? ? ? ? 2.538 ? ? metalc5 metalc ? ? C ASP 192 OD1 ? ? ? 1_555 E MG . MG ? ? A ASP 192 A MG 340 1_555 ? ? ? ? ? ? ? 2.460 ? ? metalc6 metalc ? ? F DCT . O2B ? ? ? 1_555 D MG . MG ? ? A DCT 338 A MG 339 1_555 ? ? ? ? ? ? ? 1.715 ? ? metalc7 metalc ? ? F DCT . O1A ? ? ? 1_555 D MG . MG ? ? A DCT 338 A MG 339 1_555 ? ? ? ? ? ? ? 2.950 ? ? metalc8 metalc ? ? F DCT . O1G ? ? ? 1_555 D MG . MG ? ? A DCT 338 A MG 339 1_555 ? ? ? ? ? ? ? 2.272 ? ? metalc9 metalc ? ? F DCT . O1A ? ? ? 1_555 E MG . MG ? ? A DCT 338 A MG 340 1_555 ? ? ? ? ? ? ? 2.630 ? ? metalc10 metalc ? ? D MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 339 A HOH 419 1_555 ? ? ? ? ? ? ? 2.542 ? ? hydrog1 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 7 N3 ? ? T DG 5 P DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 7 O2 ? ? T DG 5 P DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 7 N4 ? ? T DG 5 P DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 6 N3 ? ? T DG 6 P DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 6 O2 ? ? T DG 6 P DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 6 N4 ? ? T DG 6 P DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 5 N1 ? ? T DC 7 P DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 5 O6 ? ? T DC 7 P DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 5 N2 ? ? T DC 7 P DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 4 N3 ? ? T DG 8 P DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 4 O2 ? ? T DG 8 P DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 4 N4 ? ? T DG 8 P DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 3 N1 ? ? T DC 9 P DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 3 O6 ? ? T DC 9 P DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 3 N2 ? ? T DC 9 P DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 2 N1 ? ? T DC 10 P DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 2 O6 ? ? T DC 10 P DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 2 N2 ? ? T DC 10 P DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 1 N3 ? ? T DG 11 P DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 1 O2 ? ? T DG 11 P DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 1 N4 ? ? T DG 11 P DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? C ASP 190 ? A ASP 190 ? 1_555 MG ? D MG . ? A MG 339 ? 1_555 OD1 ? C ASP 190 ? A ASP 190 ? 1_555 64.4 ? 2 O ? C ASP 190 ? A ASP 190 ? 1_555 MG ? D MG . ? A MG 339 ? 1_555 OD2 ? C ASP 192 ? A ASP 192 ? 1_555 114.5 ? 3 OD1 ? C ASP 190 ? A ASP 190 ? 1_555 MG ? D MG . ? A MG 339 ? 1_555 OD2 ? C ASP 192 ? A ASP 192 ? 1_555 67.1 ? 4 O ? C ASP 190 ? A ASP 190 ? 1_555 MG ? D MG . ? A MG 339 ? 1_555 O2B ? F DCT . ? A DCT 338 ? 1_555 171.3 ? 5 OD1 ? C ASP 190 ? A ASP 190 ? 1_555 MG ? D MG . ? A MG 339 ? 1_555 O2B ? F DCT . ? A DCT 338 ? 1_555 114.1 ? 6 OD2 ? C ASP 192 ? A ASP 192 ? 1_555 MG ? D MG . ? A MG 339 ? 1_555 O2B ? F DCT . ? A DCT 338 ? 1_555 71.1 ? 7 O ? C ASP 190 ? A ASP 190 ? 1_555 MG ? D MG . ? A MG 339 ? 1_555 O1A ? F DCT . ? A DCT 338 ? 1_555 125.8 ? 8 OD1 ? C ASP 190 ? A ASP 190 ? 1_555 MG ? D MG . ? A MG 339 ? 1_555 O1A ? F DCT . ? A DCT 338 ? 1_555 63.2 ? 9 OD2 ? C ASP 192 ? A ASP 192 ? 1_555 MG ? D MG . ? A MG 339 ? 1_555 O1A ? F DCT . ? A DCT 338 ? 1_555 54.2 ? 10 O2B ? F DCT . ? A DCT 338 ? 1_555 MG ? D MG . ? A MG 339 ? 1_555 O1A ? F DCT . ? A DCT 338 ? 1_555 51.1 ? 11 O ? C ASP 190 ? A ASP 190 ? 1_555 MG ? D MG . ? A MG 339 ? 1_555 O1G ? F DCT . ? A DCT 338 ? 1_555 96.2 ? 12 OD1 ? C ASP 190 ? A ASP 190 ? 1_555 MG ? D MG . ? A MG 339 ? 1_555 O1G ? F DCT . ? A DCT 338 ? 1_555 79.1 ? 13 OD2 ? C ASP 192 ? A ASP 192 ? 1_555 MG ? D MG . ? A MG 339 ? 1_555 O1G ? F DCT . ? A DCT 338 ? 1_555 114.9 ? 14 O2B ? F DCT . ? A DCT 338 ? 1_555 MG ? D MG . ? A MG 339 ? 1_555 O1G ? F DCT . ? A DCT 338 ? 1_555 75.2 ? 15 O1A ? F DCT . ? A DCT 338 ? 1_555 MG ? D MG . ? A MG 339 ? 1_555 O1G ? F DCT . ? A DCT 338 ? 1_555 61.1 ? 16 O ? C ASP 190 ? A ASP 190 ? 1_555 MG ? D MG . ? A MG 339 ? 1_555 O ? I HOH . ? A HOH 419 ? 1_555 65.7 ? 17 OD1 ? C ASP 190 ? A ASP 190 ? 1_555 MG ? D MG . ? A MG 339 ? 1_555 O ? I HOH . ? A HOH 419 ? 1_555 93.4 ? 18 OD2 ? C ASP 192 ? A ASP 192 ? 1_555 MG ? D MG . ? A MG 339 ? 1_555 O ? I HOH . ? A HOH 419 ? 1_555 76.3 ? 19 O2B ? F DCT . ? A DCT 338 ? 1_555 MG ? D MG . ? A MG 339 ? 1_555 O ? I HOH . ? A HOH 419 ? 1_555 122.9 ? 20 O1A ? F DCT . ? A DCT 338 ? 1_555 MG ? D MG . ? A MG 339 ? 1_555 O ? I HOH . ? A HOH 419 ? 1_555 130.0 ? 21 O1G ? F DCT . ? A DCT 338 ? 1_555 MG ? D MG . ? A MG 339 ? 1_555 O ? I HOH . ? A HOH 419 ? 1_555 161.8 ? 22 OD2 ? C ASP 190 ? A ASP 190 ? 1_555 MG ? E MG . ? A MG 340 ? 1_555 OD1 ? C ASP 192 ? A ASP 192 ? 1_555 72.5 ? 23 OD2 ? C ASP 190 ? A ASP 190 ? 1_555 MG ? E MG . ? A MG 340 ? 1_555 O1A ? F DCT . ? A DCT 338 ? 1_555 81.7 ? 24 OD1 ? C ASP 192 ? A ASP 192 ? 1_555 MG ? E MG . ? A MG 340 ? 1_555 O1A ? F DCT . ? A DCT 338 ? 1_555 91.6 ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLY _struct_mon_prot_cis.label_seq_id 274 _struct_mon_prot_cis.label_asym_id C _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLY _struct_mon_prot_cis.auth_seq_id 274 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 SER _struct_mon_prot_cis.pdbx_label_seq_id_2 275 _struct_mon_prot_cis.pdbx_label_asym_id_2 C _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 SER _struct_mon_prot_cis.pdbx_auth_seq_id_2 275 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.37 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 5 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE C 150 ? PRO C 151 ? ILE A 150 PRO A 151 A 2 SER C 187 ? SER C 188 ? SER A 187 SER A 188 B 1 ILE C 174 ? VAL C 177 ? ILE A 174 VAL A 177 B 2 MET C 191 ? THR C 196 ? MET A 191 THR A 196 B 3 ARG C 253 ? LEU C 259 ? ARG A 253 LEU A 259 B 4 LYS C 234 ? CYS C 239 ? LYS A 234 CYS A 239 B 5 ILE C 224 ? LYS C 230 ? ILE A 224 LYS A 230 C 1 PHE C 291 ? ILE C 293 ? PHE A 291 ILE A 293 C 2 ILE C 298 ? PRO C 300 ? ILE A 298 PRO A 300 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE C 150 ? N ILE A 150 O SER C 188 ? O SER A 188 B 1 2 O THR C 176 ? O THR A 176 N LEU C 194 ? N LEU A 194 B 2 3 N MET C 191 ? N MET A 191 O ARG C 254 ? O ARG A 254 B 3 4 N ILE C 257 ? N ILE A 257 O PHE C 235 ? O PHE A 235 B 4 5 O VAL C 238 ? O VAL A 238 N THR C 225 ? N THR A 225 C 1 2 N THR C 292 ? N THR A 292 O ARG C 299 ? O ARG A 299 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 339 ? 6 'BINDING SITE FOR RESIDUE MG A 339' AC2 Software A MG 340 ? 4 'BINDING SITE FOR RESIDUE MG A 340' AC3 Software A DCT 338 ? 17 'BINDING SITE FOR RESIDUE DCT A 338' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 SER C 180 ? SER A 180 . ? 1_555 ? 2 AC1 6 SER C 188 ? SER A 188 . ? 1_555 ? 3 AC1 6 ASP C 190 ? ASP A 190 . ? 1_555 ? 4 AC1 6 ASP C 192 ? ASP A 192 . ? 1_555 ? 5 AC1 6 DCT F . ? DCT A 338 . ? 1_555 ? 6 AC1 6 HOH I . ? HOH A 419 . ? 1_555 ? 7 AC2 4 ASP C 190 ? ASP A 190 . ? 1_555 ? 8 AC2 4 ASP C 192 ? ASP A 192 . ? 1_555 ? 9 AC2 4 ASP C 256 ? ASP A 256 . ? 1_555 ? 10 AC2 4 DCT F . ? DCT A 338 . ? 1_555 ? 11 AC3 17 ARG C 149 ? ARG A 149 . ? 1_555 ? 12 AC3 17 GLY C 179 ? GLY A 179 . ? 1_555 ? 13 AC3 17 SER C 180 ? SER A 180 . ? 1_555 ? 14 AC3 17 ARG C 183 ? ARG A 183 . ? 1_555 ? 15 AC3 17 GLY C 189 ? GLY A 189 . ? 1_555 ? 16 AC3 17 ASP C 190 ? ASP A 190 . ? 1_555 ? 17 AC3 17 ASP C 192 ? ASP A 192 . ? 1_555 ? 18 AC3 17 TYR C 271 ? TYR A 271 . ? 1_555 ? 19 AC3 17 PHE C 272 ? PHE A 272 . ? 1_555 ? 20 AC3 17 GLY C 274 ? GLY A 274 . ? 1_555 ? 21 AC3 17 ASP C 276 ? ASP A 276 . ? 1_555 ? 22 AC3 17 ASN C 279 ? ASN A 279 . ? 1_555 ? 23 AC3 17 MG D . ? MG A 339 . ? 1_555 ? 24 AC3 17 MG E . ? MG A 340 . ? 1_555 ? 25 AC3 17 HOH I . ? HOH A 408 . ? 1_555 ? 26 AC3 17 DC B 7 ? DC P 7 . ? 1_555 ? 27 AC3 17 DG A 1 ? DG T 4 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" T DG 4 ? ? "C3'" T DG 4 ? ? 1.272 1.419 -0.147 0.006 N 2 1 "O3'" T DC 7 ? ? "C3'" T DC 7 ? ? 1.359 1.419 -0.060 0.006 N 3 1 N1 T DC 9 ? ? C6 T DC 9 ? ? 1.320 1.367 -0.047 0.006 N 4 1 "O3'" P DG 2 ? ? "C3'" P DG 2 ? ? 1.368 1.419 -0.051 0.006 N 5 1 "O3'" P DG 3 ? ? "C3'" P DG 3 ? ? 1.372 1.419 -0.047 0.006 N 6 1 "O3'" P DC 4 ? ? "C3'" P DC 4 ? ? 1.369 1.419 -0.050 0.006 N 7 1 N1 P DC 6 ? ? C6 P DC 6 ? ? 1.310 1.367 -0.057 0.006 N 8 1 N3 P DC 7 ? ? C4 P DC 7 ? ? 1.292 1.335 -0.043 0.007 N 9 1 CD A GLU 9 ? ? OE1 A GLU 9 ? ? 1.326 1.252 0.074 0.011 N 10 1 CD A GLU 21 ? ? OE1 A GLU 21 ? ? 1.320 1.252 0.068 0.011 N 11 1 CD A GLU 58 ? ? OE1 A GLU 58 ? ? 1.327 1.252 0.075 0.011 N 12 1 CD A GLU 75 ? ? OE1 A GLU 75 ? ? 1.321 1.252 0.069 0.011 N 13 1 CD A GLU 86 ? ? OE1 A GLU 86 ? ? 1.319 1.252 0.067 0.011 N 14 1 CD A GLU 144 ? ? OE2 A GLU 144 ? ? 1.323 1.252 0.071 0.011 N 15 1 CD A GLU 147 ? ? OE1 A GLU 147 ? ? 1.333 1.252 0.081 0.011 N 16 1 CD A GLU 153 ? ? OE2 A GLU 153 ? ? 1.338 1.252 0.086 0.011 N 17 1 CD A GLU 154 ? ? OE1 A GLU 154 ? ? 1.334 1.252 0.082 0.011 N 18 1 CD A GLU 165 ? ? OE1 A GLU 165 ? ? 1.328 1.252 0.076 0.011 N 19 1 CD A GLU 172 ? ? OE1 A GLU 172 ? ? 1.336 1.252 0.084 0.011 N 20 1 CD A GLU 186 ? ? OE1 A GLU 186 ? ? 1.321 1.252 0.069 0.011 N 21 1 CD A GLU 216 ? ? OE1 A GLU 216 ? ? 1.322 1.252 0.070 0.011 N 22 1 CD A GLU 232 ? ? OE2 A GLU 232 ? ? 1.333 1.252 0.081 0.011 N 23 1 CD A GLU 249 ? ? OE2 A GLU 249 ? ? 1.323 1.252 0.071 0.011 N 24 1 CD A GLU 295 ? ? OE2 A GLU 295 ? ? 1.326 1.252 0.074 0.011 N 25 1 N A LEU 301 ? ? CA A LEU 301 ? ? 1.327 1.459 -0.132 0.020 N 26 1 CD A GLU 309 ? ? OE1 A GLU 309 ? ? 1.329 1.252 0.077 0.011 N 27 1 CD A GLU 329 ? ? OE1 A GLU 329 ? ? 1.319 1.252 0.067 0.011 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C8 T DG 4 ? ? N9 T DG 4 ? ? "C1'" T DG 4 ? ? 138.31 127.00 11.31 1.30 N 2 1 C4 T DG 4 ? ? N9 T DG 4 ? ? "C1'" T DG 4 ? ? 115.00 126.50 -11.50 1.30 N 3 1 "O5'" T DG 5 ? ? "C5'" T DG 5 ? ? "C4'" T DG 5 ? ? 104.52 109.40 -4.88 0.80 N 4 1 "C1'" T DG 5 ? ? "O4'" T DG 5 ? ? "C4'" T DG 5 ? ? 103.14 110.10 -6.96 1.00 N 5 1 "O4'" T DG 6 ? ? "C1'" T DG 6 ? ? N9 T DG 6 ? ? 110.33 108.30 2.03 0.30 N 6 1 C8 T DG 6 ? ? N9 T DG 6 ? ? "C1'" T DG 6 ? ? 140.14 127.00 13.14 1.30 N 7 1 C4 T DG 6 ? ? N9 T DG 6 ? ? "C1'" T DG 6 ? ? 114.04 126.50 -12.46 1.30 N 8 1 C6 T DC 7 ? ? N1 T DC 7 ? ? "C1'" T DC 7 ? ? 131.13 120.80 10.33 1.20 N 9 1 C2 T DC 7 ? ? N1 T DC 7 ? ? "C1'" T DC 7 ? ? 106.56 118.80 -12.24 1.10 N 10 1 P T DG 8 ? ? "O5'" T DG 8 ? ? "C5'" T DG 8 ? ? 107.17 120.90 -13.73 1.60 N 11 1 C8 T DG 8 ? ? N9 T DG 8 ? ? "C1'" T DG 8 ? ? 155.69 127.00 28.69 1.30 N 12 1 C4 T DG 8 ? ? N9 T DG 8 ? ? "C1'" T DG 8 ? ? 98.99 126.50 -27.51 1.30 N 13 1 "O4'" T DC 9 ? ? "C4'" T DC 9 ? ? "C3'" T DC 9 ? ? 100.10 104.50 -4.40 0.40 N 14 1 C6 T DC 9 ? ? N1 T DC 9 ? ? "C1'" T DC 9 ? ? 134.48 120.80 13.68 1.20 N 15 1 C2 T DC 9 ? ? N1 T DC 9 ? ? "C1'" T DC 9 ? ? 101.94 118.80 -16.86 1.10 N 16 1 "O4'" T DC 10 ? ? "C4'" T DC 10 ? ? "C3'" T DC 10 ? ? 101.86 104.50 -2.64 0.40 N 17 1 "O4'" T DC 10 ? ? "C1'" T DC 10 ? ? N1 T DC 10 ? ? 102.97 108.00 -5.03 0.70 N 18 1 C6 T DC 10 ? ? N1 T DC 10 ? ? C2 T DC 10 ? ? 123.33 120.30 3.03 0.40 N 19 1 C6 T DC 10 ? ? N1 T DC 10 ? ? "C1'" T DC 10 ? ? 128.47 120.80 7.67 1.20 N 20 1 C2 T DC 10 ? ? N1 T DC 10 ? ? "C1'" T DC 10 ? ? 98.76 118.80 -20.04 1.10 N 21 1 "C3'" T DC 10 ? ? "O3'" T DC 10 ? ? P T DG 11 ? ? 111.96 119.70 -7.74 1.20 Y 22 1 "C3'" T DG 11 ? ? "C2'" T DG 11 ? ? "C1'" T DG 11 ? ? 96.97 102.40 -5.43 0.80 N 23 1 "O4'" P DC 1 ? ? "C1'" P DC 1 ? ? N1 P DC 1 ? ? 110.11 108.30 1.81 0.30 N 24 1 "O4'" P DG 2 ? ? "C1'" P DG 2 ? ? N9 P DG 2 ? ? 111.98 108.30 3.68 0.30 N 25 1 C8 P DG 2 ? ? N9 P DG 2 ? ? "C1'" P DG 2 ? ? 113.49 127.00 -13.51 1.30 N 26 1 P P DG 3 ? ? "O5'" P DG 3 ? ? "C5'" P DG 3 ? ? 107.63 120.90 -13.27 1.60 N 27 1 P P DG 5 ? ? "O5'" P DG 5 ? ? "C5'" P DG 5 ? ? 111.16 120.90 -9.74 1.60 N 28 1 "O4'" P DG 5 ? ? "C1'" P DG 5 ? ? "C2'" P DG 5 ? ? 98.44 105.90 -7.46 0.80 N 29 1 "O4'" P DG 5 ? ? "C1'" P DG 5 ? ? N9 P DG 5 ? ? 111.44 108.30 3.14 0.30 N 30 1 C8 P DG 5 ? ? N9 P DG 5 ? ? "C1'" P DG 5 ? ? 116.47 127.00 -10.53 1.30 N 31 1 C4 P DG 5 ? ? N9 P DG 5 ? ? "C1'" P DG 5 ? ? 137.50 126.50 11.00 1.30 N 32 1 "O4'" P DC 6 ? ? "C1'" P DC 6 ? ? N1 P DC 6 ? ? 110.39 108.30 2.09 0.30 N 33 1 C6 P DC 6 ? ? N1 P DC 6 ? ? "C1'" P DC 6 ? ? 130.29 120.80 9.49 1.20 N 34 1 C2 P DC 6 ? ? N1 P DC 6 ? ? "C1'" P DC 6 ? ? 108.17 118.80 -10.63 1.10 N 35 1 "O5'" P DC 7 ? ? "C5'" P DC 7 ? ? "C4'" P DC 7 ? ? 103.78 109.40 -5.62 0.80 N 36 1 "O4'" P DC 7 ? ? "C4'" P DC 7 ? ? "C3'" P DC 7 ? ? 101.12 104.50 -3.38 0.40 N 37 1 "C4'" P DC 7 ? ? "C3'" P DC 7 ? ? "C2'" P DC 7 ? ? 97.81 102.20 -4.39 0.70 N 38 1 "C3'" P DC 7 ? ? "C2'" P DC 7 ? ? "C1'" P DC 7 ? ? 96.57 102.40 -5.83 0.80 N 39 1 C6 P DC 7 ? ? N1 P DC 7 ? ? "C1'" P DC 7 ? ? 138.82 120.80 18.02 1.20 N 40 1 C2 P DC 7 ? ? N1 P DC 7 ? ? "C1'" P DC 7 ? ? 93.39 118.80 -25.41 1.10 N 41 1 CB A ASP 17 ? ? CG A ASP 17 ? ? OD1 A ASP 17 ? ? 111.44 118.30 -6.86 0.90 N 42 1 C A ALA 23 ? ? N A ASN 24 ? ? CA A ASN 24 ? ? 105.19 121.70 -16.51 2.50 Y 43 1 CB A TYR 39 ? ? CG A TYR 39 ? ? CD1 A TYR 39 ? ? 115.66 121.00 -5.34 0.60 N 44 1 CB A ASP 74 ? ? CG A ASP 74 ? ? OD1 A ASP 74 ? ? 109.63 118.30 -8.67 0.90 N 45 1 CB A ASP 74 ? ? CG A ASP 74 ? ? OD2 A ASP 74 ? ? 126.00 118.30 7.70 0.90 N 46 1 CB A ASP 92 ? ? CG A ASP 92 ? ? OD1 A ASP 92 ? ? 112.73 118.30 -5.57 0.90 N 47 1 CB A ASP 116 ? ? CG A ASP 116 ? ? OD1 A ASP 116 ? ? 112.71 118.30 -5.59 0.90 N 48 1 CB A ASP 130 ? ? CG A ASP 130 ? ? OD1 A ASP 130 ? ? 112.53 118.30 -5.77 0.90 N 49 1 NE A ARG 137 ? ? CZ A ARG 137 ? ? NH2 A ARG 137 ? ? 117.24 120.30 -3.06 0.50 N 50 1 CB A ASP 145 ? ? CG A ASP 145 ? ? OD1 A ASP 145 ? ? 112.01 118.30 -6.29 0.90 N 51 1 C A ILE 150 ? ? N A PRO 151 ? ? CD A PRO 151 ? ? 112.58 128.40 -15.82 2.10 Y 52 1 NE A ARG 152 ? ? CZ A ARG 152 ? ? NH1 A ARG 152 ? ? 123.93 120.30 3.63 0.50 N 53 1 NE A ARG 152 ? ? CZ A ARG 152 ? ? NH2 A ARG 152 ? ? 117.06 120.30 -3.24 0.50 N 54 1 CB A ASP 160 ? ? CG A ASP 160 ? ? OD1 A ASP 160 ? ? 111.69 118.30 -6.61 0.90 N 55 1 CB A ASP 170 ? ? CG A ASP 170 ? ? OD1 A ASP 170 ? ? 108.22 118.30 -10.08 0.90 N 56 1 CB A ASP 170 ? ? CG A ASP 170 ? ? OD2 A ASP 170 ? ? 124.24 118.30 5.94 0.90 N 57 1 CB A TYR 173 ? ? CA A TYR 173 ? ? C A TYR 173 ? ? 97.58 110.40 -12.82 2.00 N 58 1 CA A THR 176 ? ? CB A THR 176 ? ? CG2 A THR 176 ? ? 103.22 112.40 -9.18 1.40 N 59 1 CA A CYS 178 ? ? CB A CYS 178 ? ? SG A CYS 178 ? ? 102.60 114.00 -11.40 1.80 N 60 1 NE A ARG 182 ? ? CZ A ARG 182 ? ? NH1 A ARG 182 ? ? 123.35 120.30 3.05 0.50 N 61 1 CB A ASP 190 ? ? CG A ASP 190 ? ? OD1 A ASP 190 ? ? 128.77 118.30 10.47 0.90 N 62 1 CB A ASP 190 ? ? CG A ASP 190 ? ? OD2 A ASP 190 ? ? 108.81 118.30 -9.49 0.90 N 63 1 CA A THR 196 ? ? CB A THR 196 ? ? OG1 A THR 196 ? ? 95.36 109.00 -13.64 2.10 N 64 1 CA A THR 196 ? ? CB A THR 196 ? ? CG2 A THR 196 ? ? 126.36 112.40 13.96 1.40 N 65 1 N A LYS 234 ? ? CA A LYS 234 ? ? CB A LYS 234 ? ? 122.08 110.60 11.48 1.80 N 66 1 C A LEU 241 ? ? N A PRO 242 ? ? CD A PRO 242 ? ? 89.69 128.40 -38.71 2.10 Y 67 1 CB A ASP 256 ? ? CG A ASP 256 ? ? OD1 A ASP 256 ? ? 108.36 118.30 -9.94 0.90 N 68 1 CB A ASP 256 ? ? CG A ASP 256 ? ? OD2 A ASP 256 ? ? 127.55 118.30 9.25 0.90 N 69 1 CA A CYS 267 ? ? CB A CYS 267 ? ? SG A CYS 267 ? ? 100.41 114.00 -13.59 1.80 N 70 1 CB A TYR 271 ? ? CG A TYR 271 ? ? CD2 A TYR 271 ? ? 116.94 121.00 -4.06 0.60 N 71 1 CB A ASP 276 ? ? CG A ASP 276 ? ? OD2 A ASP 276 ? ? 112.89 118.30 -5.41 0.90 N 72 1 NE A ARG 283 ? ? CZ A ARG 283 ? ? NH2 A ARG 283 ? ? 117.15 120.30 -3.15 0.50 N 73 1 C A ARG 299 ? ? N A PRO 300 ? ? CD A PRO 300 ? ? 109.64 128.40 -18.76 2.10 Y 74 1 N A LEU 301 ? ? CA A LEU 301 ? ? CB A LEU 301 ? ? 129.34 110.40 18.94 2.00 N 75 1 C A LEU 311 ? ? N A PRO 312 ? ? CD A PRO 312 ? ? 110.78 128.40 -17.62 2.10 Y 76 1 CB A ASP 314 ? ? CG A ASP 314 ? ? OD1 A ASP 314 ? ? 124.61 118.30 6.31 0.90 N 77 1 CB A ASP 314 ? ? CG A ASP 314 ? ? OD2 A ASP 314 ? ? 112.51 118.30 -5.79 0.90 N 78 1 NE A ARG 328 ? ? CZ A ARG 328 ? ? NH1 A ARG 328 ? ? 125.09 120.30 4.79 0.50 N 79 1 NE A ARG 328 ? ? CZ A ARG 328 ? ? NH2 A ARG 328 ? ? 116.11 120.30 -4.19 0.50 N 80 1 CB A ASP 332 ? ? CG A ASP 332 ? ? OD1 A ASP 332 ? ? 110.01 118.30 -8.29 0.90 N 81 1 CD A ARG 333 ? ? NE A ARG 333 ? ? CZ A ARG 333 ? ? 114.81 123.60 -8.79 1.40 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 10 ? ? -9.48 108.69 2 1 LEU A 11 ? ? -44.33 -71.18 3 1 THR A 16 ? ? -38.75 -31.58 4 1 ASN A 28 ? ? -94.14 -63.17 5 1 SER A 30 ? ? -139.06 -154.91 6 1 ALA A 32 ? ? -4.87 44.06 7 1 LYS A 54 ? ? -102.30 -70.68 8 1 THR A 67 ? ? -17.43 -76.89 9 1 LYS A 81 ? ? -52.45 171.96 10 1 LEU A 82 ? ? 179.11 77.42 11 1 ILE A 88 ? ? -21.63 -57.18 12 1 ARG A 89 ? ? -38.46 4.92 13 1 ASP A 91 ? ? 5.04 171.08 14 1 ASP A 92 ? ? 73.31 -35.22 15 1 LYS A 120 ? ? -154.80 45.38 16 1 ASN A 164 ? ? -53.76 -79.30 17 1 ASP A 170 ? ? -174.46 136.73 18 1 CYS A 178 ? ? -95.94 -137.10 19 1 SER A 202 ? ? -51.90 -1.41 20 1 SER A 204 ? ? 153.80 -44.43 21 1 SER A 205 ? ? 35.99 29.85 22 1 LYS A 206 ? ? -110.60 -118.62 23 1 GLN A 207 ? ? 24.91 57.14 24 1 LYS A 220 ? ? -63.94 25.08 25 1 ARG A 222 ? ? 69.93 60.38 26 1 PHE A 223 ? ? -126.00 -62.72 27 1 THR A 233 ? ? -137.67 -55.30 28 1 SER A 243 ? ? -176.76 -171.33 29 1 LYS A 262 ? ? -35.65 -29.73 30 1 GLU A 295 ? ? -56.65 -9.92 31 1 SER A 315 ? ? 173.59 152.64 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG T 4 ? ? 0.081 'SIDE CHAIN' 2 1 DG T 6 ? ? 0.056 'SIDE CHAIN' 3 1 DC T 9 ? ? 0.077 'SIDE CHAIN' 4 1 DC T 10 ? ? 0.178 'SIDE CHAIN' 5 1 DC P 1 ? ? 0.148 'SIDE CHAIN' 6 1 DG P 2 ? ? 0.204 'SIDE CHAIN' 7 1 DG P 3 ? ? 0.121 'SIDE CHAIN' 8 1 DG P 5 ? ? 0.072 'SIDE CHAIN' 9 1 DC P 7 ? ? 0.139 'SIDE CHAIN' # _pdbx_entry_details.entry_id 2BPF _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;SEQUENCE ADVISORY NOTICE: DIFFERENCE BETWEEN SWISS-PROT AND PDB SEQUENCE. SWISS-PROT ENTRY NAME: DPOB_RAT SWISS-PROT RESIDUE PDB SEQRES NAME NUMBER NAME CHAIN SEQ/INSERT CODE ARG 227 LEU 228 THE N-TERMINAL METHIONINE IS INCLUDED IN THE GENE SEQUENCE EVEN THOUGH IT IS REMOVED AFTER TRANSLATION IN THE CELL; SEE MATSUKAGE ET AL., J. BIOL. CHEM. 262, 8960, (1987). FOR THE AMINO ACID SEQUENCE, SEE A. KUMAR ET AL., J. BIOL. CHEM. 265, 2124, (1990). ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? C MET 1 2 1 Y 1 A SER 2 ? C SER 2 3 1 Y 1 A LYS 3 ? C LYS 3 4 1 Y 1 A ARG 4 ? C ARG 4 5 1 Y 1 A LYS 5 ? C LYS 5 6 1 Y 1 A ALA 6 ? C ALA 6 7 1 Y 1 A PRO 7 ? C PRO 7 8 1 Y 1 A GLN 8 ? C GLN 8 9 1 Y 1 A ASP 246 ? C ASP 246 10 1 Y 1 A GLU 247 ? C GLU 247 11 1 Y 1 A ASN 248 ? C ASN 248 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DC OP3 O N N 88 DC P P N N 89 DC OP1 O N N 90 DC OP2 O N N 91 DC "O5'" O N N 92 DC "C5'" C N N 93 DC "C4'" C N R 94 DC "O4'" O N N 95 DC "C3'" C N S 96 DC "O3'" O N N 97 DC "C2'" C N N 98 DC "C1'" C N R 99 DC N1 N N N 100 DC C2 C N N 101 DC O2 O N N 102 DC N3 N N N 103 DC C4 C N N 104 DC N4 N N N 105 DC C5 C N N 106 DC C6 C N N 107 DC HOP3 H N N 108 DC HOP2 H N N 109 DC "H5'" H N N 110 DC "H5''" H N N 111 DC "H4'" H N N 112 DC "H3'" H N N 113 DC "HO3'" H N N 114 DC "H2'" H N N 115 DC "H2''" H N N 116 DC "H1'" H N N 117 DC H41 H N N 118 DC H42 H N N 119 DC H5 H N N 120 DC H6 H N N 121 DCT N1 N N N 122 DCT C2 C N N 123 DCT N3 N N N 124 DCT C4 C N N 125 DCT C5 C N N 126 DCT C6 C N N 127 DCT O2 O N N 128 DCT N4 N N N 129 DCT "C1'" C N R 130 DCT "C2'" C N N 131 DCT "C3'" C N N 132 DCT "C4'" C N S 133 DCT "O4'" O N N 134 DCT "C5'" C N N 135 DCT "O5'" O N N 136 DCT PA P N S 137 DCT O1A O N N 138 DCT O2A O N N 139 DCT O3A O N N 140 DCT PB P N R 141 DCT O1B O N N 142 DCT O2B O N N 143 DCT O3B O N N 144 DCT PG P N N 145 DCT O1G O N N 146 DCT O2G O N N 147 DCT O3G O N N 148 DCT H5 H N N 149 DCT H6 H N N 150 DCT HN41 H N N 151 DCT HN42 H N N 152 DCT "H1'" H N N 153 DCT "H2'" H N N 154 DCT "H2''" H N N 155 DCT "H3'1" H N N 156 DCT "H3'2" H N N 157 DCT "H4'" H N N 158 DCT "H5'" H N N 159 DCT "H5''" H N N 160 DCT HOA2 H N N 161 DCT HOB2 H N N 162 DCT HOG2 H N N 163 DCT HOG3 H N N 164 DG OP3 O N N 165 DG P P N N 166 DG OP1 O N N 167 DG OP2 O N N 168 DG "O5'" O N N 169 DG "C5'" C N N 170 DG "C4'" C N R 171 DG "O4'" O N N 172 DG "C3'" C N S 173 DG "O3'" O N N 174 DG "C2'" C N N 175 DG "C1'" C N R 176 DG N9 N Y N 177 DG C8 C Y N 178 DG N7 N Y N 179 DG C5 C Y N 180 DG C6 C N N 181 DG O6 O N N 182 DG N1 N N N 183 DG C2 C N N 184 DG N2 N N N 185 DG N3 N N N 186 DG C4 C Y N 187 DG HOP3 H N N 188 DG HOP2 H N N 189 DG "H5'" H N N 190 DG "H5''" H N N 191 DG "H4'" H N N 192 DG "H3'" H N N 193 DG "HO3'" H N N 194 DG "H2'" H N N 195 DG "H2''" H N N 196 DG "H1'" H N N 197 DG H8 H N N 198 DG H1 H N N 199 DG H21 H N N 200 DG H22 H N N 201 GLN N N N N 202 GLN CA C N S 203 GLN C C N N 204 GLN O O N N 205 GLN CB C N N 206 GLN CG C N N 207 GLN CD C N N 208 GLN OE1 O N N 209 GLN NE2 N N N 210 GLN OXT O N N 211 GLN H H N N 212 GLN H2 H N N 213 GLN HA H N N 214 GLN HB2 H N N 215 GLN HB3 H N N 216 GLN HG2 H N N 217 GLN HG3 H N N 218 GLN HE21 H N N 219 GLN HE22 H N N 220 GLN HXT H N N 221 GLU N N N N 222 GLU CA C N S 223 GLU C C N N 224 GLU O O N N 225 GLU CB C N N 226 GLU CG C N N 227 GLU CD C N N 228 GLU OE1 O N N 229 GLU OE2 O N N 230 GLU OXT O N N 231 GLU H H N N 232 GLU H2 H N N 233 GLU HA H N N 234 GLU HB2 H N N 235 GLU HB3 H N N 236 GLU HG2 H N N 237 GLU HG3 H N N 238 GLU HE2 H N N 239 GLU HXT H N N 240 GLY N N N N 241 GLY CA C N N 242 GLY C C N N 243 GLY O O N N 244 GLY OXT O N N 245 GLY H H N N 246 GLY H2 H N N 247 GLY HA2 H N N 248 GLY HA3 H N N 249 GLY HXT H N N 250 HIS N N N N 251 HIS CA C N S 252 HIS C C N N 253 HIS O O N N 254 HIS CB C N N 255 HIS CG C Y N 256 HIS ND1 N Y N 257 HIS CD2 C Y N 258 HIS CE1 C Y N 259 HIS NE2 N Y N 260 HIS OXT O N N 261 HIS H H N N 262 HIS H2 H N N 263 HIS HA H N N 264 HIS HB2 H N N 265 HIS HB3 H N N 266 HIS HD1 H N N 267 HIS HD2 H N N 268 HIS HE1 H N N 269 HIS HE2 H N N 270 HIS HXT H N N 271 HOH O O N N 272 HOH H1 H N N 273 HOH H2 H N N 274 ILE N N N N 275 ILE CA C N S 276 ILE C C N N 277 ILE O O N N 278 ILE CB C N S 279 ILE CG1 C N N 280 ILE CG2 C N N 281 ILE CD1 C N N 282 ILE OXT O N N 283 ILE H H N N 284 ILE H2 H N N 285 ILE HA H N N 286 ILE HB H N N 287 ILE HG12 H N N 288 ILE HG13 H N N 289 ILE HG21 H N N 290 ILE HG22 H N N 291 ILE HG23 H N N 292 ILE HD11 H N N 293 ILE HD12 H N N 294 ILE HD13 H N N 295 ILE HXT H N N 296 LEU N N N N 297 LEU CA C N S 298 LEU C C N N 299 LEU O O N N 300 LEU CB C N N 301 LEU CG C N N 302 LEU CD1 C N N 303 LEU CD2 C N N 304 LEU OXT O N N 305 LEU H H N N 306 LEU H2 H N N 307 LEU HA H N N 308 LEU HB2 H N N 309 LEU HB3 H N N 310 LEU HG H N N 311 LEU HD11 H N N 312 LEU HD12 H N N 313 LEU HD13 H N N 314 LEU HD21 H N N 315 LEU HD22 H N N 316 LEU HD23 H N N 317 LEU HXT H N N 318 LYS N N N N 319 LYS CA C N S 320 LYS C C N N 321 LYS O O N N 322 LYS CB C N N 323 LYS CG C N N 324 LYS CD C N N 325 LYS CE C N N 326 LYS NZ N N N 327 LYS OXT O N N 328 LYS H H N N 329 LYS H2 H N N 330 LYS HA H N N 331 LYS HB2 H N N 332 LYS HB3 H N N 333 LYS HG2 H N N 334 LYS HG3 H N N 335 LYS HD2 H N N 336 LYS HD3 H N N 337 LYS HE2 H N N 338 LYS HE3 H N N 339 LYS HZ1 H N N 340 LYS HZ2 H N N 341 LYS HZ3 H N N 342 LYS HXT H N N 343 MET N N N N 344 MET CA C N S 345 MET C C N N 346 MET O O N N 347 MET CB C N N 348 MET CG C N N 349 MET SD S N N 350 MET CE C N N 351 MET OXT O N N 352 MET H H N N 353 MET H2 H N N 354 MET HA H N N 355 MET HB2 H N N 356 MET HB3 H N N 357 MET HG2 H N N 358 MET HG3 H N N 359 MET HE1 H N N 360 MET HE2 H N N 361 MET HE3 H N N 362 MET HXT H N N 363 MG MG MG N N 364 PHE N N N N 365 PHE CA C N S 366 PHE C C N N 367 PHE O O N N 368 PHE CB C N N 369 PHE CG C Y N 370 PHE CD1 C Y N 371 PHE CD2 C Y N 372 PHE CE1 C Y N 373 PHE CE2 C Y N 374 PHE CZ C Y N 375 PHE OXT O N N 376 PHE H H N N 377 PHE H2 H N N 378 PHE HA H N N 379 PHE HB2 H N N 380 PHE HB3 H N N 381 PHE HD1 H N N 382 PHE HD2 H N N 383 PHE HE1 H N N 384 PHE HE2 H N N 385 PHE HZ H N N 386 PHE HXT H N N 387 PRO N N N N 388 PRO CA C N S 389 PRO C C N N 390 PRO O O N N 391 PRO CB C N N 392 PRO CG C N N 393 PRO CD C N N 394 PRO OXT O N N 395 PRO H H N N 396 PRO HA H N N 397 PRO HB2 H N N 398 PRO HB3 H N N 399 PRO HG2 H N N 400 PRO HG3 H N N 401 PRO HD2 H N N 402 PRO HD3 H N N 403 PRO HXT H N N 404 SER N N N N 405 SER CA C N S 406 SER C C N N 407 SER O O N N 408 SER CB C N N 409 SER OG O N N 410 SER OXT O N N 411 SER H H N N 412 SER H2 H N N 413 SER HA H N N 414 SER HB2 H N N 415 SER HB3 H N N 416 SER HG H N N 417 SER HXT H N N 418 THR N N N N 419 THR CA C N S 420 THR C C N N 421 THR O O N N 422 THR CB C N R 423 THR OG1 O N N 424 THR CG2 C N N 425 THR OXT O N N 426 THR H H N N 427 THR H2 H N N 428 THR HA H N N 429 THR HB H N N 430 THR HG1 H N N 431 THR HG21 H N N 432 THR HG22 H N N 433 THR HG23 H N N 434 THR HXT H N N 435 TRP N N N N 436 TRP CA C N S 437 TRP C C N N 438 TRP O O N N 439 TRP CB C N N 440 TRP CG C Y N 441 TRP CD1 C Y N 442 TRP CD2 C Y N 443 TRP NE1 N Y N 444 TRP CE2 C Y N 445 TRP CE3 C Y N 446 TRP CZ2 C Y N 447 TRP CZ3 C Y N 448 TRP CH2 C Y N 449 TRP OXT O N N 450 TRP H H N N 451 TRP H2 H N N 452 TRP HA H N N 453 TRP HB2 H N N 454 TRP HB3 H N N 455 TRP HD1 H N N 456 TRP HE1 H N N 457 TRP HE3 H N N 458 TRP HZ2 H N N 459 TRP HZ3 H N N 460 TRP HH2 H N N 461 TRP HXT H N N 462 TYR N N N N 463 TYR CA C N S 464 TYR C C N N 465 TYR O O N N 466 TYR CB C N N 467 TYR CG C Y N 468 TYR CD1 C Y N 469 TYR CD2 C Y N 470 TYR CE1 C Y N 471 TYR CE2 C Y N 472 TYR CZ C Y N 473 TYR OH O N N 474 TYR OXT O N N 475 TYR H H N N 476 TYR H2 H N N 477 TYR HA H N N 478 TYR HB2 H N N 479 TYR HB3 H N N 480 TYR HD1 H N N 481 TYR HD2 H N N 482 TYR HE1 H N N 483 TYR HE2 H N N 484 TYR HH H N N 485 TYR HXT H N N 486 VAL N N N N 487 VAL CA C N S 488 VAL C C N N 489 VAL O O N N 490 VAL CB C N N 491 VAL CG1 C N N 492 VAL CG2 C N N 493 VAL OXT O N N 494 VAL H H N N 495 VAL H2 H N N 496 VAL HA H N N 497 VAL HB H N N 498 VAL HG11 H N N 499 VAL HG12 H N N 500 VAL HG13 H N N 501 VAL HG21 H N N 502 VAL HG22 H N N 503 VAL HG23 H N N 504 VAL HXT H N N 505 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DC OP3 P sing N N 83 DC OP3 HOP3 sing N N 84 DC P OP1 doub N N 85 DC P OP2 sing N N 86 DC P "O5'" sing N N 87 DC OP2 HOP2 sing N N 88 DC "O5'" "C5'" sing N N 89 DC "C5'" "C4'" sing N N 90 DC "C5'" "H5'" sing N N 91 DC "C5'" "H5''" sing N N 92 DC "C4'" "O4'" sing N N 93 DC "C4'" "C3'" sing N N 94 DC "C4'" "H4'" sing N N 95 DC "O4'" "C1'" sing N N 96 DC "C3'" "O3'" sing N N 97 DC "C3'" "C2'" sing N N 98 DC "C3'" "H3'" sing N N 99 DC "O3'" "HO3'" sing N N 100 DC "C2'" "C1'" sing N N 101 DC "C2'" "H2'" sing N N 102 DC "C2'" "H2''" sing N N 103 DC "C1'" N1 sing N N 104 DC "C1'" "H1'" sing N N 105 DC N1 C2 sing N N 106 DC N1 C6 sing N N 107 DC C2 O2 doub N N 108 DC C2 N3 sing N N 109 DC N3 C4 doub N N 110 DC C4 N4 sing N N 111 DC C4 C5 sing N N 112 DC N4 H41 sing N N 113 DC N4 H42 sing N N 114 DC C5 C6 doub N N 115 DC C5 H5 sing N N 116 DC C6 H6 sing N N 117 DCT N1 C2 sing N N 118 DCT N1 C6 sing N N 119 DCT N1 "C1'" sing N N 120 DCT C2 N3 sing N N 121 DCT C2 O2 doub N N 122 DCT N3 C4 doub N N 123 DCT C4 C5 sing N N 124 DCT C4 N4 sing N N 125 DCT C5 C6 doub N N 126 DCT C5 H5 sing N N 127 DCT C6 H6 sing N N 128 DCT N4 HN41 sing N N 129 DCT N4 HN42 sing N N 130 DCT "C1'" "C2'" sing N N 131 DCT "C1'" "O4'" sing N N 132 DCT "C1'" "H1'" sing N N 133 DCT "C2'" "C3'" sing N N 134 DCT "C2'" "H2'" sing N N 135 DCT "C2'" "H2''" sing N N 136 DCT "C3'" "C4'" sing N N 137 DCT "C3'" "H3'1" sing N N 138 DCT "C3'" "H3'2" sing N N 139 DCT "C4'" "O4'" sing N N 140 DCT "C4'" "C5'" sing N N 141 DCT "C4'" "H4'" sing N N 142 DCT "C5'" "O5'" sing N N 143 DCT "C5'" "H5'" sing N N 144 DCT "C5'" "H5''" sing N N 145 DCT "O5'" PA sing N N 146 DCT PA O1A doub N N 147 DCT PA O2A sing N N 148 DCT PA O3A sing N N 149 DCT O2A HOA2 sing N N 150 DCT O3A PB sing N N 151 DCT PB O1B doub N N 152 DCT PB O2B sing N N 153 DCT PB O3B sing N N 154 DCT O2B HOB2 sing N N 155 DCT O3B PG sing N N 156 DCT PG O1G doub N N 157 DCT PG O2G sing N N 158 DCT PG O3G sing N N 159 DCT O2G HOG2 sing N N 160 DCT O3G HOG3 sing N N 161 DG OP3 P sing N N 162 DG OP3 HOP3 sing N N 163 DG P OP1 doub N N 164 DG P OP2 sing N N 165 DG P "O5'" sing N N 166 DG OP2 HOP2 sing N N 167 DG "O5'" "C5'" sing N N 168 DG "C5'" "C4'" sing N N 169 DG "C5'" "H5'" sing N N 170 DG "C5'" "H5''" sing N N 171 DG "C4'" "O4'" sing N N 172 DG "C4'" "C3'" sing N N 173 DG "C4'" "H4'" sing N N 174 DG "O4'" "C1'" sing N N 175 DG "C3'" "O3'" sing N N 176 DG "C3'" "C2'" sing N N 177 DG "C3'" "H3'" sing N N 178 DG "O3'" "HO3'" sing N N 179 DG "C2'" "C1'" sing N N 180 DG "C2'" "H2'" sing N N 181 DG "C2'" "H2''" sing N N 182 DG "C1'" N9 sing N N 183 DG "C1'" "H1'" sing N N 184 DG N9 C8 sing Y N 185 DG N9 C4 sing Y N 186 DG C8 N7 doub Y N 187 DG C8 H8 sing N N 188 DG N7 C5 sing Y N 189 DG C5 C6 sing N N 190 DG C5 C4 doub Y N 191 DG C6 O6 doub N N 192 DG C6 N1 sing N N 193 DG N1 C2 sing N N 194 DG N1 H1 sing N N 195 DG C2 N2 sing N N 196 DG C2 N3 doub N N 197 DG N2 H21 sing N N 198 DG N2 H22 sing N N 199 DG N3 C4 sing N N 200 GLN N CA sing N N 201 GLN N H sing N N 202 GLN N H2 sing N N 203 GLN CA C sing N N 204 GLN CA CB sing N N 205 GLN CA HA sing N N 206 GLN C O doub N N 207 GLN C OXT sing N N 208 GLN CB CG sing N N 209 GLN CB HB2 sing N N 210 GLN CB HB3 sing N N 211 GLN CG CD sing N N 212 GLN CG HG2 sing N N 213 GLN CG HG3 sing N N 214 GLN CD OE1 doub N N 215 GLN CD NE2 sing N N 216 GLN NE2 HE21 sing N N 217 GLN NE2 HE22 sing N N 218 GLN OXT HXT sing N N 219 GLU N CA sing N N 220 GLU N H sing N N 221 GLU N H2 sing N N 222 GLU CA C sing N N 223 GLU CA CB sing N N 224 GLU CA HA sing N N 225 GLU C O doub N N 226 GLU C OXT sing N N 227 GLU CB CG sing N N 228 GLU CB HB2 sing N N 229 GLU CB HB3 sing N N 230 GLU CG CD sing N N 231 GLU CG HG2 sing N N 232 GLU CG HG3 sing N N 233 GLU CD OE1 doub N N 234 GLU CD OE2 sing N N 235 GLU OE2 HE2 sing N N 236 GLU OXT HXT sing N N 237 GLY N CA sing N N 238 GLY N H sing N N 239 GLY N H2 sing N N 240 GLY CA C sing N N 241 GLY CA HA2 sing N N 242 GLY CA HA3 sing N N 243 GLY C O doub N N 244 GLY C OXT sing N N 245 GLY OXT HXT sing N N 246 HIS N CA sing N N 247 HIS N H sing N N 248 HIS N H2 sing N N 249 HIS CA C sing N N 250 HIS CA CB sing N N 251 HIS CA HA sing N N 252 HIS C O doub N N 253 HIS C OXT sing N N 254 HIS CB CG sing N N 255 HIS CB HB2 sing N N 256 HIS CB HB3 sing N N 257 HIS CG ND1 sing Y N 258 HIS CG CD2 doub Y N 259 HIS ND1 CE1 doub Y N 260 HIS ND1 HD1 sing N N 261 HIS CD2 NE2 sing Y N 262 HIS CD2 HD2 sing N N 263 HIS CE1 NE2 sing Y N 264 HIS CE1 HE1 sing N N 265 HIS NE2 HE2 sing N N 266 HIS OXT HXT sing N N 267 HOH O H1 sing N N 268 HOH O H2 sing N N 269 ILE N CA sing N N 270 ILE N H sing N N 271 ILE N H2 sing N N 272 ILE CA C sing N N 273 ILE CA CB sing N N 274 ILE CA HA sing N N 275 ILE C O doub N N 276 ILE C OXT sing N N 277 ILE CB CG1 sing N N 278 ILE CB CG2 sing N N 279 ILE CB HB sing N N 280 ILE CG1 CD1 sing N N 281 ILE CG1 HG12 sing N N 282 ILE CG1 HG13 sing N N 283 ILE CG2 HG21 sing N N 284 ILE CG2 HG22 sing N N 285 ILE CG2 HG23 sing N N 286 ILE CD1 HD11 sing N N 287 ILE CD1 HD12 sing N N 288 ILE CD1 HD13 sing N N 289 ILE OXT HXT sing N N 290 LEU N CA sing N N 291 LEU N H sing N N 292 LEU N H2 sing N N 293 LEU CA C sing N N 294 LEU CA CB sing N N 295 LEU CA HA sing N N 296 LEU C O doub N N 297 LEU C OXT sing N N 298 LEU CB CG sing N N 299 LEU CB HB2 sing N N 300 LEU CB HB3 sing N N 301 LEU CG CD1 sing N N 302 LEU CG CD2 sing N N 303 LEU CG HG sing N N 304 LEU CD1 HD11 sing N N 305 LEU CD1 HD12 sing N N 306 LEU CD1 HD13 sing N N 307 LEU CD2 HD21 sing N N 308 LEU CD2 HD22 sing N N 309 LEU CD2 HD23 sing N N 310 LEU OXT HXT sing N N 311 LYS N CA sing N N 312 LYS N H sing N N 313 LYS N H2 sing N N 314 LYS CA C sing N N 315 LYS CA CB sing N N 316 LYS CA HA sing N N 317 LYS C O doub N N 318 LYS C OXT sing N N 319 LYS CB CG sing N N 320 LYS CB HB2 sing N N 321 LYS CB HB3 sing N N 322 LYS CG CD sing N N 323 LYS CG HG2 sing N N 324 LYS CG HG3 sing N N 325 LYS CD CE sing N N 326 LYS CD HD2 sing N N 327 LYS CD HD3 sing N N 328 LYS CE NZ sing N N 329 LYS CE HE2 sing N N 330 LYS CE HE3 sing N N 331 LYS NZ HZ1 sing N N 332 LYS NZ HZ2 sing N N 333 LYS NZ HZ3 sing N N 334 LYS OXT HXT sing N N 335 MET N CA sing N N 336 MET N H sing N N 337 MET N H2 sing N N 338 MET CA C sing N N 339 MET CA CB sing N N 340 MET CA HA sing N N 341 MET C O doub N N 342 MET C OXT sing N N 343 MET CB CG sing N N 344 MET CB HB2 sing N N 345 MET CB HB3 sing N N 346 MET CG SD sing N N 347 MET CG HG2 sing N N 348 MET CG HG3 sing N N 349 MET SD CE sing N N 350 MET CE HE1 sing N N 351 MET CE HE2 sing N N 352 MET CE HE3 sing N N 353 MET OXT HXT sing N N 354 PHE N CA sing N N 355 PHE N H sing N N 356 PHE N H2 sing N N 357 PHE CA C sing N N 358 PHE CA CB sing N N 359 PHE CA HA sing N N 360 PHE C O doub N N 361 PHE C OXT sing N N 362 PHE CB CG sing N N 363 PHE CB HB2 sing N N 364 PHE CB HB3 sing N N 365 PHE CG CD1 doub Y N 366 PHE CG CD2 sing Y N 367 PHE CD1 CE1 sing Y N 368 PHE CD1 HD1 sing N N 369 PHE CD2 CE2 doub Y N 370 PHE CD2 HD2 sing N N 371 PHE CE1 CZ doub Y N 372 PHE CE1 HE1 sing N N 373 PHE CE2 CZ sing Y N 374 PHE CE2 HE2 sing N N 375 PHE CZ HZ sing N N 376 PHE OXT HXT sing N N 377 PRO N CA sing N N 378 PRO N CD sing N N 379 PRO N H sing N N 380 PRO CA C sing N N 381 PRO CA CB sing N N 382 PRO CA HA sing N N 383 PRO C O doub N N 384 PRO C OXT sing N N 385 PRO CB CG sing N N 386 PRO CB HB2 sing N N 387 PRO CB HB3 sing N N 388 PRO CG CD sing N N 389 PRO CG HG2 sing N N 390 PRO CG HG3 sing N N 391 PRO CD HD2 sing N N 392 PRO CD HD3 sing N N 393 PRO OXT HXT sing N N 394 SER N CA sing N N 395 SER N H sing N N 396 SER N H2 sing N N 397 SER CA C sing N N 398 SER CA CB sing N N 399 SER CA HA sing N N 400 SER C O doub N N 401 SER C OXT sing N N 402 SER CB OG sing N N 403 SER CB HB2 sing N N 404 SER CB HB3 sing N N 405 SER OG HG sing N N 406 SER OXT HXT sing N N 407 THR N CA sing N N 408 THR N H sing N N 409 THR N H2 sing N N 410 THR CA C sing N N 411 THR CA CB sing N N 412 THR CA HA sing N N 413 THR C O doub N N 414 THR C OXT sing N N 415 THR CB OG1 sing N N 416 THR CB CG2 sing N N 417 THR CB HB sing N N 418 THR OG1 HG1 sing N N 419 THR CG2 HG21 sing N N 420 THR CG2 HG22 sing N N 421 THR CG2 HG23 sing N N 422 THR OXT HXT sing N N 423 TRP N CA sing N N 424 TRP N H sing N N 425 TRP N H2 sing N N 426 TRP CA C sing N N 427 TRP CA CB sing N N 428 TRP CA HA sing N N 429 TRP C O doub N N 430 TRP C OXT sing N N 431 TRP CB CG sing N N 432 TRP CB HB2 sing N N 433 TRP CB HB3 sing N N 434 TRP CG CD1 doub Y N 435 TRP CG CD2 sing Y N 436 TRP CD1 NE1 sing Y N 437 TRP CD1 HD1 sing N N 438 TRP CD2 CE2 doub Y N 439 TRP CD2 CE3 sing Y N 440 TRP NE1 CE2 sing Y N 441 TRP NE1 HE1 sing N N 442 TRP CE2 CZ2 sing Y N 443 TRP CE3 CZ3 doub Y N 444 TRP CE3 HE3 sing N N 445 TRP CZ2 CH2 doub Y N 446 TRP CZ2 HZ2 sing N N 447 TRP CZ3 CH2 sing Y N 448 TRP CZ3 HZ3 sing N N 449 TRP CH2 HH2 sing N N 450 TRP OXT HXT sing N N 451 TYR N CA sing N N 452 TYR N H sing N N 453 TYR N H2 sing N N 454 TYR CA C sing N N 455 TYR CA CB sing N N 456 TYR CA HA sing N N 457 TYR C O doub N N 458 TYR C OXT sing N N 459 TYR CB CG sing N N 460 TYR CB HB2 sing N N 461 TYR CB HB3 sing N N 462 TYR CG CD1 doub Y N 463 TYR CG CD2 sing Y N 464 TYR CD1 CE1 sing Y N 465 TYR CD1 HD1 sing N N 466 TYR CD2 CE2 doub Y N 467 TYR CD2 HD2 sing N N 468 TYR CE1 CZ doub Y N 469 TYR CE1 HE1 sing N N 470 TYR CE2 CZ sing Y N 471 TYR CE2 HE2 sing N N 472 TYR CZ OH sing N N 473 TYR OH HH sing N N 474 TYR OXT HXT sing N N 475 VAL N CA sing N N 476 VAL N H sing N N 477 VAL N H2 sing N N 478 VAL CA C sing N N 479 VAL CA CB sing N N 480 VAL CA HA sing N N 481 VAL C O doub N N 482 VAL C OXT sing N N 483 VAL CB CG1 sing N N 484 VAL CB CG2 sing N N 485 VAL CB HB sing N N 486 VAL CG1 HG11 sing N N 487 VAL CG1 HG12 sing N N 488 VAL CG1 HG13 sing N N 489 VAL CG2 HG21 sing N N 490 VAL CG2 HG22 sing N N 491 VAL CG2 HG23 sing N N 492 VAL OXT HXT sing N N 493 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2BPF 'double helix' 2BPF 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 2 1_555 B DC 7 1_555 0.263 -0.010 -0.160 6.039 8.118 -2.711 1 T_DG5:DC7_P T 5 ? P 7 ? 19 1 1 A DG 3 1_555 B DC 6 1_555 0.109 -0.282 -0.617 -7.448 -7.673 -9.552 2 T_DG6:DC6_P T 6 ? P 6 ? 19 1 1 A DC 4 1_555 B DG 5 1_555 -0.226 -0.354 -0.676 -2.999 -2.384 -8.532 3 T_DC7:DG5_P T 7 ? P 5 ? 19 1 1 A DG 5 1_555 B DC 4 1_555 -0.222 -0.500 0.626 8.552 -8.276 -16.180 4 T_DG8:DC4_P T 8 ? P 4 ? 19 1 1 A DC 6 1_555 B DG 3 1_555 -1.619 -0.315 -0.323 15.392 -15.482 -5.156 5 T_DC9:DG3_P T 9 ? P 3 ? 19 1 1 A DC 7 1_555 B DG 2 1_555 -0.442 -0.282 -0.391 2.528 -6.454 -4.248 6 T_DC10:DG2_P T 10 ? P 2 ? 19 1 1 A DG 8 1_555 B DC 1 1_555 -0.971 -0.549 0.874 27.338 -0.219 -5.899 7 T_DG11:DC1_P T 11 ? P 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 2 1_555 B DC 7 1_555 A DG 3 1_555 B DC 6 1_555 0.370 -0.799 3.978 4.817 6.652 27.676 -3.382 0.544 3.700 13.533 -9.800 28.846 1 TT_DG5DG6:DC6DC7_PP T 5 ? P 7 ? T 6 ? P 6 ? 1 A DG 3 1_555 B DC 6 1_555 A DC 4 1_555 B DG 5 1_555 -1.304 -0.676 3.264 2.615 4.194 30.992 -2.014 2.887 3.031 7.787 -4.855 31.374 2 TT_DG6DC7:DG5DC6_PP T 6 ? P 6 ? T 7 ? P 5 ? 1 A DC 4 1_555 B DG 5 1_555 A DG 5 1_555 B DC 4 1_555 -0.152 0.094 3.219 -10.245 8.559 31.438 -1.198 -1.366 3.043 14.979 17.929 34.089 3 TT_DC7DG8:DC4DG5_PP T 7 ? P 5 ? T 8 ? P 4 ? 1 A DG 5 1_555 B DC 4 1_555 A DC 6 1_555 B DG 3 1_555 0.026 -0.773 3.204 3.101 3.141 28.686 -2.212 0.610 3.089 6.291 -6.212 29.017 4 TT_DG8DC9:DG3DC4_PP T 8 ? P 4 ? T 9 ? P 3 ? 1 A DC 6 1_555 B DG 3 1_555 A DC 7 1_555 B DG 2 1_555 -0.431 0.354 3.613 2.008 -1.682 44.083 0.644 0.780 3.576 -2.239 -2.672 44.157 5 TT_DC9DC10:DG2DG3_PP T 9 ? P 3 ? T 10 ? P 2 ? 1 A DC 7 1_555 B DG 2 1_555 A DG 8 1_555 B DC 1 1_555 0.600 0.735 3.081 -14.298 3.587 30.882 0.729 -3.104 2.625 6.305 25.134 34.143 6 TT_DC10DG11:DC1DG2_PP T 10 ? P 2 ? T 11 ? P 1 ? # _atom_sites.entry_id 2BPF _atom_sites.fract_transf_matrix[1][1] 0.010537 _atom_sites.fract_transf_matrix[1][2] 0.006084 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012168 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008503 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # _atom_sites_footnote.id 1 _atom_sites_footnote.text 'GLY A 274 - SER A 275 OMEGA = 359.63 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATIO' # loop_ _atom_type.symbol C MG N O P S # loop_