HEADER RECEPTOR 19-APR-05 2BPH TITLE STRUCTURE OF MURINE DECTIN-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DECTIN-1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: EXTRACELLULAR BETA-GLUCAN RECOGNITION DOMAIN, RESIDUES 113- COMPND 5 244; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 CELL_LINE: RAW264.7; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS RECEPTOR, DECTIN-1, BETA-GLUCAN, FUNGAL RECOGNITION, C-TYPE LECTIN- KEYWDS 2 LIKE DOMAIN, CTLD, CARBOHYDRATE EXPDTA X-RAY DIFFRACTION AUTHOR J.BROWN,C.A.O'CALLAGHAN,A.S.J.MARSHALL,R.J.C.GILBERT,C.SIEBOLD, AUTHOR 2 S.GORDON,G.D.BROWN,E.Y.JONES REVDAT 9 13-DEC-23 2BPH 1 LINK REVDAT 8 10-APR-19 2BPH 1 SOURCE REVDAT 7 03-APR-19 2BPH 1 REMARK REVDAT 6 13-JUL-11 2BPH 1 VERSN REVDAT 5 24-FEB-09 2BPH 1 VERSN REVDAT 4 20-MAY-08 2BPH 1 VERSN REVDAT 3 05-JUN-07 2BPH 1 JRNL REVDAT 2 15-MAY-07 2BPH 1 JRNL REMARK REVDAT 1 31-AUG-06 2BPH 0 JRNL AUTH J.BROWN,C.A.O'CALLAGHAN,A.S.J.MARSHALL,R.J.C.GILBERT, JRNL AUTH 2 C.SIEBOLD,S.GORDON,G.D.BROWN,E.Y.JONES JRNL TITL STRUCTURE OF THE FUNGAL BETA-GLUCAN-BINDING IMMUNE RECEPTOR JRNL TITL 2 DECTIN-1: IMPLICATIONS FOR FUNCTION. JRNL REF PROTEIN SCI. V. 16 1042 2007 JRNL REFN ISSN 0961-8368 JRNL PMID 17473009 JRNL DOI 10.1110/PS.072791207 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 12791 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 666 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 925 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 57 REMARK 3 BIN FREE R VALUE : 0.3350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2086 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 170 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.34000 REMARK 3 B22 (A**2) : 0.34000 REMARK 3 B33 (A**2) : -0.51000 REMARK 3 B12 (A**2) : 0.17000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.339 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.239 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.197 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.208 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2160 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2930 ; 1.316 ; 1.890 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 254 ; 6.880 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 114 ;37.866 ;24.211 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 340 ;16.894 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;12.196 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 286 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1702 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1041 ; 0.207 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1416 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 188 ; 0.187 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 59 ; 0.199 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.219 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1304 ; 0.559 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2042 ; 0.947 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1014 ; 1.571 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 888 ; 2.239 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 117 A 244 5 REMARK 3 1 B 117 B 244 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 512 ; 0.19 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 A (A): 531 ; 0.58 ; 5.00 REMARK 3 MEDIUM THERMAL 1 A (A**2): 512 ; 0.75 ; 2.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 531 ; 1.35 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 117 A 244 REMARK 3 ORIGIN FOR THE GROUP (A): 15.1230 25.1120 37.5160 REMARK 3 T TENSOR REMARK 3 T11: -0.1394 T22: -0.0349 REMARK 3 T33: -0.1653 T12: 0.0406 REMARK 3 T13: -0.0299 T23: -0.0849 REMARK 3 L TENSOR REMARK 3 L11: 8.4131 L22: 2.1470 REMARK 3 L33: 2.5871 L12: 1.9309 REMARK 3 L13: 0.3310 L23: 0.6753 REMARK 3 S TENSOR REMARK 3 S11: 0.1365 S12: -0.0143 S13: -0.3057 REMARK 3 S21: 0.1608 S22: -0.0355 S23: 0.0042 REMARK 3 S31: 0.2699 S32: 0.0562 S33: -0.1010 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 117 B 244 REMARK 3 ORIGIN FOR THE GROUP (A): 42.8670 41.8090 38.0070 REMARK 3 T TENSOR REMARK 3 T11: -0.1222 T22: -0.1048 REMARK 3 T33: -0.1984 T12: 0.0397 REMARK 3 T13: -0.0014 T23: 0.0284 REMARK 3 L TENSOR REMARK 3 L11: 5.0819 L22: 2.6140 REMARK 3 L33: 2.8090 L12: 0.8506 REMARK 3 L13: -0.3993 L23: -0.3670 REMARK 3 S TENSOR REMARK 3 S11: 0.2381 S12: -0.1521 S13: 0.0867 REMARK 3 S21: 0.1830 S22: -0.1219 S23: -0.1072 REMARK 3 S31: -0.1709 S32: 0.1303 S33: -0.1161 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2BPH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-APR-05. REMARK 100 THE DEPOSITION ID IS D_1290023694. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.931 REMARK 200 MONOCHROMATOR : DIAMOND (111), GE(220) REMARK 200 OPTICS : TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13478 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.74000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: PDB ENTRY 2BPD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM CHLORIDE, 0.05M SODIUM REMARK 280 CACODYLATE PH6.5, 0.1M MAGNESIUM ACETATE, 10% PEG 8000, PH 6.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.66400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 24.33200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 1510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 112 REMARK 465 GLY A 113 REMARK 465 GLY A 114 REMARK 465 PHE A 115 REMARK 465 SER A 116 REMARK 465 HIS A 246 REMARK 465 HIS A 247 REMARK 465 HIS A 248 REMARK 465 HIS A 249 REMARK 465 HIS A 250 REMARK 465 HIS A 251 REMARK 465 MET B 112 REMARK 465 GLY B 113 REMARK 465 GLY B 114 REMARK 465 PHE B 115 REMARK 465 SER B 116 REMARK 465 HIS B 246 REMARK 465 HIS B 247 REMARK 465 HIS B 248 REMARK 465 HIS B 249 REMARK 465 HIS B 250 REMARK 465 HIS B 251 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 245 CA C O CB CG CD CE REMARK 470 LYS A 245 NZ REMARK 470 LYS B 245 CA C O CB CG CD CE REMARK 470 LYS B 245 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 230 O HOH A 2072 2.12 REMARK 500 OE2 GLU A 167 OG SER A 225 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 122 -6.47 79.31 REMARK 500 ALA A 152 -162.88 -112.29 REMARK 500 ASP A 195 8.34 -68.65 REMARK 500 SER A 203 -37.63 -131.10 REMARK 500 ASN B 122 -13.90 76.30 REMARK 500 ALA B 152 -159.46 -130.94 REMARK 500 ASP B 195 1.18 -69.60 REMARK 500 VAL B 210 116.87 -38.55 REMARK 500 GLN B 212 -124.08 -123.68 REMARK 500 SER B 214 141.98 -170.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1245 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 156 O REMARK 620 2 ASP A 158 OD2 84.6 REMARK 620 3 GLU A 162 OE2 81.2 76.3 REMARK 620 4 GLU A 162 OE1 91.2 126.5 50.5 REMARK 620 5 GLU A 241 OE2 72.1 136.7 132.4 90.7 REMARK 620 6 GLU A 241 OE1 121.8 142.7 129.3 82.2 50.5 REMARK 620 7 HOH A2077 O 158.8 81.4 80.1 84.6 128.6 78.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1245 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS B 156 O REMARK 620 2 ASP B 158 OD2 83.6 REMARK 620 3 GLU B 162 OE1 83.0 123.8 REMARK 620 4 GLU B 162 OE2 74.6 72.5 51.3 REMARK 620 5 GLU B 241 OE2 73.2 135.4 91.1 132.9 REMARK 620 6 GLU B 241 OE1 122.3 146.9 82.8 130.6 51.5 REMARK 620 7 HOH B2088 O 162.4 86.2 90.8 88.6 123.6 72.9 REMARK 620 8 HOH B2091 O 116.6 77.5 154.1 146.5 79.7 72.5 74.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1245 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B1245 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BPD RELATED DB: PDB REMARK 900 STRUCTURE OF MURINE DECTIN-1 REMARK 900 RELATED ID: 2BPE RELATED DB: PDB REMARK 900 STRUCTURE OF MURINE DECTIN-1 DBREF 2BPH A 112 112 PDB 2BPH 2BPH 112 112 DBREF 2BPH A 113 244 UNP Q6QLQ4 Q6QLQ4_MOUSE 113 244 DBREF 2BPH A 245 251 PDB 2BPH 2BPH 245 251 DBREF 2BPH B 112 112 PDB 2BPH 2BPH 112 112 DBREF 2BPH B 113 244 UNP Q6QLQ4 Q6QLQ4_MOUSE 113 244 DBREF 2BPH B 245 251 PDB 2BPH 2BPH 245 251 SEQRES 1 A 140 MET GLY GLY PHE SER GLN SER CYS LEU PRO ASN TRP ILE SEQRES 2 A 140 MET HIS GLY LYS SER CYS TYR LEU PHE SER PHE SER GLY SEQRES 3 A 140 ASN SER TRP TYR GLY SER LYS ARG HIS CYS SER GLN LEU SEQRES 4 A 140 GLY ALA HIS LEU LEU LYS ILE ASP ASN SER LYS GLU PHE SEQRES 5 A 140 GLU PHE ILE GLU SER GLN THR SER SER HIS ARG ILE ASN SEQRES 6 A 140 ALA PHE TRP ILE GLY LEU SER ARG ASN GLN SER GLU GLY SEQRES 7 A 140 PRO TRP PHE TRP GLU ASP GLY SER ALA PHE PHE PRO ASN SEQRES 8 A 140 SER PHE GLN VAL ARG ASN ALA VAL PRO GLN GLU SER LEU SEQRES 9 A 140 LEU HIS ASN CYS VAL TRP ILE HIS GLY SER GLU VAL TYR SEQRES 10 A 140 ASN GLN ILE CYS ASN THR SER SER TYR SER ILE CYS GLU SEQRES 11 A 140 LYS GLU LEU LYS HIS HIS HIS HIS HIS HIS SEQRES 1 B 140 MET GLY GLY PHE SER GLN SER CYS LEU PRO ASN TRP ILE SEQRES 2 B 140 MET HIS GLY LYS SER CYS TYR LEU PHE SER PHE SER GLY SEQRES 3 B 140 ASN SER TRP TYR GLY SER LYS ARG HIS CYS SER GLN LEU SEQRES 4 B 140 GLY ALA HIS LEU LEU LYS ILE ASP ASN SER LYS GLU PHE SEQRES 5 B 140 GLU PHE ILE GLU SER GLN THR SER SER HIS ARG ILE ASN SEQRES 6 B 140 ALA PHE TRP ILE GLY LEU SER ARG ASN GLN SER GLU GLY SEQRES 7 B 140 PRO TRP PHE TRP GLU ASP GLY SER ALA PHE PHE PRO ASN SEQRES 8 B 140 SER PHE GLN VAL ARG ASN ALA VAL PRO GLN GLU SER LEU SEQRES 9 B 140 LEU HIS ASN CYS VAL TRP ILE HIS GLY SER GLU VAL TYR SEQRES 10 B 140 ASN GLN ILE CYS ASN THR SER SER TYR SER ILE CYS GLU SEQRES 11 B 140 LYS GLU LEU LYS HIS HIS HIS HIS HIS HIS HET MG A1245 1 HET MG B1245 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG 2(MG 2+) FORMUL 5 HOH *170(H2 O) HELIX 1 1 SER A 139 GLN A 149 1 11 HELIX 2 2 ASN A 159 SER A 171 1 13 HELIX 3 3 SER B 139 LEU B 150 1 12 HELIX 4 4 ASN B 159 SER B 172 1 14 SHEET 1 AA 4 ILE A 124 HIS A 126 0 SHEET 2 AA 4 LYS A 128 ASN A 138 -1 O SER A 129 N HIS A 126 SHEET 3 AA 4 SER A 236 LEU A 244 -1 O SER A 236 N ASN A 138 SHEET 4 AA 4 HIS A 153 LEU A 154 -1 O HIS A 153 N GLU A 241 SHEET 1 AB 7 ILE A 124 HIS A 126 0 SHEET 2 AB 7 LYS A 128 ASN A 138 -1 O SER A 129 N HIS A 126 SHEET 3 AB 7 SER A 236 LEU A 244 -1 O SER A 236 N ASN A 138 SHEET 4 AB 7 ALA A 177 ARG A 184 1 O ALA A 177 N TYR A 237 SHEET 5 AB 7 ASN A 218 HIS A 223 -1 O ASN A 218 N ARG A 184 SHEET 6 AB 7 GLU A 226 GLN A 230 -1 O GLU A 226 N HIS A 223 SHEET 7 AB 7 GLN A 205 ARG A 207 1 O GLN A 205 N VAL A 227 SHEET 1 BA 4 ILE B 124 HIS B 126 0 SHEET 2 BA 4 LYS B 128 ASN B 138 -1 O SER B 129 N HIS B 126 SHEET 3 BA 4 SER B 236 LEU B 244 -1 O SER B 236 N ASN B 138 SHEET 4 BA 4 HIS B 153 LEU B 155 -1 O HIS B 153 N GLU B 241 SHEET 1 BB 7 ILE B 124 HIS B 126 0 SHEET 2 BB 7 LYS B 128 ASN B 138 -1 O SER B 129 N HIS B 126 SHEET 3 BB 7 SER B 236 LEU B 244 -1 O SER B 236 N ASN B 138 SHEET 4 BB 7 ALA B 177 ARG B 184 1 O ALA B 177 N TYR B 237 SHEET 5 BB 7 ASN B 218 HIS B 223 -1 O ASN B 218 N ARG B 184 SHEET 6 BB 7 GLU B 226 GLN B 230 -1 O GLU B 226 N HIS B 223 SHEET 7 BB 7 GLN B 205 ARG B 207 1 O GLN B 205 N VAL B 227 SSBOND 1 CYS A 119 CYS A 130 1555 1555 2.04 SSBOND 2 CYS A 147 CYS A 240 1555 1555 2.03 SSBOND 3 CYS A 219 CYS A 232 1555 1555 2.07 SSBOND 4 CYS B 119 CYS B 130 1555 1555 2.02 SSBOND 5 CYS B 147 CYS B 240 1555 1555 2.06 SSBOND 6 CYS B 219 CYS B 232 1555 1555 2.04 LINK O LYS A 156 MG MG A1245 1555 1555 2.22 LINK OD2 ASP A 158 MG MG A1245 1555 1555 2.26 LINK OE2 GLU A 162 MG MG A1245 1555 1555 2.72 LINK OE1 GLU A 162 MG MG A1245 1555 1555 2.35 LINK OE2 GLU A 241 MG MG A1245 1555 1555 2.79 LINK OE1 GLU A 241 MG MG A1245 1555 1555 2.25 LINK MG MG A1245 O HOH A2077 1555 1555 2.76 LINK O LYS B 156 MG MG B1245 1555 1555 2.26 LINK OD2 ASP B 158 MG MG B1245 1555 1555 2.17 LINK OE1 GLU B 162 MG MG B1245 1555 1555 2.23 LINK OE2 GLU B 162 MG MG B1245 1555 1555 2.76 LINK OE2 GLU B 241 MG MG B1245 1555 1555 2.65 LINK OE1 GLU B 241 MG MG B1245 1555 1555 2.35 LINK MG MG B1245 O HOH B2088 1555 1555 2.70 LINK MG MG B1245 O HOH B2091 1555 1555 2.17 SITE 1 AC1 5 LYS A 156 ASP A 158 GLU A 162 GLU A 241 SITE 2 AC1 5 HOH A2077 SITE 1 AC2 6 LYS B 156 ASP B 158 GLU B 162 GLU B 241 SITE 2 AC2 6 HOH B2088 HOH B2091 CRYST1 57.199 57.199 72.996 90.00 90.00 120.00 P 32 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017483 0.010094 0.000000 0.00000 SCALE2 0.000000 0.020187 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013699 0.00000 MTRIX1 1 -0.998690 0.017890 0.047960 55.69507 1 MTRIX2 1 -0.024510 -0.989670 -0.141220 72.34037 1 MTRIX3 1 0.044940 -0.142210 0.988820 3.78090 1