HEADER TRANSFERASE 22-APR-05 2BPQ TITLE ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE (TRPD) FROM MYCOBACTERIUM TITLE 2 TUBERCULOSIS (APO STRUCTURE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.4.2.18; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET23 KEYWDS TRANSFERASE, TRYPTOPHAN BIOSYNTHESIS, ANTHRANILATE, TRANSFERASE KEYWDS 2 PHOSPHORIBOSYLTRANSFERASE, AMINO-ACID BIOSYNTHESIS, AROMATIC AMINO KEYWDS 3 ACID BIOSYNTHESIS, GLYCOSYLTRANSFERASE, PSI, PROTEIN STRUCTURE KEYWDS 4 INITIATIVE, TB STRUCTURAL GENOMICS CONSORTIUM, TBSGC, STRUCTURAL KEYWDS 5 GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR C.E.LEE,C.GOODFELLOW,F.JAVID-MAJD,E.N.BAKER,J.S.LOTT,TB STRUCTURAL AUTHOR 2 GENOMICS CONSORTIUM (TBSGC) REVDAT 6 08-MAY-24 2BPQ 1 REMARK REVDAT 5 21-AUG-19 2BPQ 1 REMARK REVDAT 4 29-APR-15 2BPQ 1 REMARK VERSN HETSYN FORMUL REVDAT 3 24-FEB-09 2BPQ 1 VERSN REVDAT 2 08-NOV-06 2BPQ 1 KEYWDS AUTHOR REMARK REVDAT 1 04-JAN-06 2BPQ 0 JRNL AUTH C.E.LEE,C.GOODFELLOW,F.JAVID-MAJD,E.N.BAKER,J.S.LOTT JRNL TITL THE CRYSTAL STRUCTURE OF TRPD, A METABOLIC ENZYME ESSENTIAL JRNL TITL 2 FOR LUNG COLONIZATION BY MYCOBACTERIUM TUBERCULOSIS, IN JRNL TITL 3 COMPLEX WITH ITS SUBSTRATE PHOSPHORIBOSYLPYROPHOSPHATE JRNL REF J.MOL.BIOL. V. 355 784 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16337227 JRNL DOI 10.1016/J.JMB.2005.11.016 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOODWITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 57750 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3069 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3929 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1970 REMARK 3 BIN FREE R VALUE SET COUNT : 224 REMARK 3 BIN FREE R VALUE : 0.2660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4894 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 242 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.138 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.133 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.082 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.725 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5049 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6893 ; 1.411 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 687 ; 5.351 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 194 ;32.612 ;22.784 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 698 ;13.781 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 46 ;18.328 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 806 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3895 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2326 ; 0.213 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3517 ; 0.302 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 269 ; 0.118 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 54 ; 0.183 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.111 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3471 ; 1.043 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5359 ; 1.501 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1761 ; 2.432 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1529 ; 3.843 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2BPQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-APR-05. REMARK 100 THE DEPOSITION ID IS D_1290023724. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-APR-03 REMARK 200 TEMPERATURE (KELVIN) : 110.0 REMARK 200 PH : 6.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X8C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68243 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.840 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.41000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CACODYLIC ACID PH6, 7% PEG 6000, REMARK 280 2% BENZAMIDINE HCL, PH 6.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.43700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.76000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.20750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.76000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.43700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.20750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 N-(5-PHOSPHO-D-RIBOSYL)-ANTHRANILATE + DIPHISPHATE => REMARK 400 ANTHRANILATE + 5-PHOSPHO-ALPHA-D-RIBOSE 1-DIPHOSPHATE. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 1 REMARK 465 ALA A 2 REMARK 465 LEU A 3 REMARK 465 SER A 4 REMARK 465 ALA A 5 REMARK 465 GLU A 6 REMARK 465 GLY A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 GLY A 10 REMARK 465 GLY A 11 REMARK 465 SER A 12 REMARK 465 ARG A 13 REMARK 465 GLY A 14 REMARK 465 GLY A 15 REMARK 465 SER A 16 REMARK 465 PRO A 17 REMARK 465 LYS A 18 REMARK 465 ALA A 19 REMARK 465 GLU A 20 REMARK 465 ALA A 21 REMARK 465 ALA A 22 REMARK 465 SER A 23 REMARK 465 VAL A 24 REMARK 465 ILE A 370 REMARK 465 LEU A 371 REMARK 465 ALA A 372 REMARK 465 ALA A 373 REMARK 465 VAL B 1 REMARK 465 ALA B 2 REMARK 465 LEU B 3 REMARK 465 SER B 4 REMARK 465 ALA B 5 REMARK 465 GLU B 6 REMARK 465 GLY B 7 REMARK 465 SER B 8 REMARK 465 SER B 9 REMARK 465 GLY B 10 REMARK 465 GLY B 11 REMARK 465 SER B 12 REMARK 465 ARG B 13 REMARK 465 GLY B 14 REMARK 465 GLY B 15 REMARK 465 SER B 16 REMARK 465 PRO B 17 REMARK 465 LYS B 18 REMARK 465 ALA B 19 REMARK 465 GLU B 20 REMARK 465 ALA B 21 REMARK 465 ALA B 22 REMARK 465 SER B 23 REMARK 465 VAL B 24 REMARK 465 ASP B 111 REMARK 465 SER B 142 REMARK 465 SER B 143 REMARK 465 LEU B 144 REMARK 465 SER B 145 REMARK 465 TYR B 186 REMARK 465 ARG B 187 REMARK 465 HIS B 188 REMARK 465 ALA B 189 REMARK 465 ARG B 333 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 58 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 238 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 333 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 369 CA C O CB CG CD OE1 REMARK 470 GLN A 369 NE2 REMARK 470 ARG B 58 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 193 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 194 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO B 184 N SER B 185 1.67 REMARK 500 CA PRO B 184 N SER B 185 1.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 230 CG MET A 230 SD 0.178 REMARK 500 PRO B 184 C SER B 185 N -0.771 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 184 O - C - N ANGL. DEV. = 10.8 DEGREES REMARK 500 ARG B 238 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG B 368 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG B 368 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 42 131.53 -37.70 REMARK 500 ASP A 251 44.48 -91.34 REMARK 500 THR A 257 -168.85 -176.22 REMARK 500 HIS B 183 65.34 -110.70 REMARK 500 ASP B 251 38.81 -91.88 REMARK 500 THR B 257 -165.56 -172.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2023 DISTANCE = 6.19 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEN A 1369 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEN B 1374 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEN B 1375 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1370 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1376 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: RV2192C RELATED DB: TARGETDB DBREF 2BPQ A 1 1 PDB 2BPQ 2BPQ 1 1 DBREF 2BPQ A 2 370 UNP P66992 TRPD_MYCTU 2 370 DBREF 2BPQ A 371 373 PDB 2BPQ 2BPQ 371 373 DBREF 2BPQ B 1 1 PDB 2BPQ 2BPQ 1 1 DBREF 2BPQ B 2 370 UNP P66992 TRPD_MYCTU 2 370 DBREF 2BPQ B 371 373 PDB 2BPQ 2BPQ 371 373 SEQRES 1 A 373 VAL ALA LEU SER ALA GLU GLY SER SER GLY GLY SER ARG SEQRES 2 A 373 GLY GLY SER PRO LYS ALA GLU ALA ALA SER VAL PRO SER SEQRES 3 A 373 TRP PRO GLN ILE LEU GLY ARG LEU THR ASP ASN ARG ASP SEQRES 4 A 373 LEU ALA ARG GLY GLN ALA ALA TRP ALA MET ASP GLN ILE SEQRES 5 A 373 MET THR GLY ASN ALA ARG PRO ALA GLN ILE ALA ALA PHE SEQRES 6 A 373 ALA VAL ALA MET THR MET LYS ALA PRO THR ALA ASP GLU SEQRES 7 A 373 VAL GLY GLU LEU ALA GLY VAL MET LEU SER HIS ALA HIS SEQRES 8 A 373 PRO LEU PRO ALA ASP THR VAL PRO ASP ASP ALA VAL ASP SEQRES 9 A 373 VAL VAL GLY THR GLY GLY ASP GLY VAL ASN THR VAL ASN SEQRES 10 A 373 LEU SER THR MET ALA ALA ILE VAL VAL ALA ALA ALA GLY SEQRES 11 A 373 VAL PRO VAL VAL LYS HIS GLY ASN ARG ALA ALA SER SER SEQRES 12 A 373 LEU SER GLY GLY ALA ASP THR LEU GLU ALA LEU GLY VAL SEQRES 13 A 373 ARG ILE ASP LEU GLY PRO ASP LEU VAL ALA ARG SER LEU SEQRES 14 A 373 ALA GLU VAL GLY ILE GLY PHE CYS PHE ALA PRO ARG PHE SEQRES 15 A 373 HIS PRO SER TYR ARG HIS ALA ALA ALA VAL ARG ARG GLU SEQRES 16 A 373 ILE GLY VAL PRO THR VAL PHE ASN LEU LEU GLY PRO LEU SEQRES 17 A 373 THR ASN PRO ALA ARG PRO ARG ALA GLY LEU ILE GLY CYS SEQRES 18 A 373 ALA PHE ALA ASP LEU ALA GLU VAL MET ALA GLY VAL PHE SEQRES 19 A 373 ALA ALA ARG ARG SER SER VAL LEU VAL VAL HIS GLY ASP SEQRES 20 A 373 ASP GLY LEU ASP GLU LEU THR THR THR THR THR SER THR SEQRES 21 A 373 ILE TRP ARG VAL ALA ALA GLY SER VAL ASP LYS LEU THR SEQRES 22 A 373 PHE ASP PRO ALA GLY PHE GLY PHE ALA ARG ALA GLN LEU SEQRES 23 A 373 ASP GLN LEU ALA GLY GLY ASP ALA GLN ALA ASN ALA ALA SEQRES 24 A 373 ALA VAL ARG ALA VAL LEU GLY GLY ALA ARG GLY PRO VAL SEQRES 25 A 373 ARG ASP ALA VAL VAL LEU ASN ALA ALA GLY ALA ILE VAL SEQRES 26 A 373 ALA HIS ALA GLY LEU SER SER ARG ALA GLU TRP LEU PRO SEQRES 27 A 373 ALA TRP GLU GLU GLY LEU ARG ARG ALA SER ALA ALA ILE SEQRES 28 A 373 ASP THR GLY ALA ALA GLU GLN LEU LEU ALA ARG TRP VAL SEQRES 29 A 373 ARG PHE GLY ARG GLN ILE LEU ALA ALA SEQRES 1 B 373 VAL ALA LEU SER ALA GLU GLY SER SER GLY GLY SER ARG SEQRES 2 B 373 GLY GLY SER PRO LYS ALA GLU ALA ALA SER VAL PRO SER SEQRES 3 B 373 TRP PRO GLN ILE LEU GLY ARG LEU THR ASP ASN ARG ASP SEQRES 4 B 373 LEU ALA ARG GLY GLN ALA ALA TRP ALA MET ASP GLN ILE SEQRES 5 B 373 MET THR GLY ASN ALA ARG PRO ALA GLN ILE ALA ALA PHE SEQRES 6 B 373 ALA VAL ALA MET THR MET LYS ALA PRO THR ALA ASP GLU SEQRES 7 B 373 VAL GLY GLU LEU ALA GLY VAL MET LEU SER HIS ALA HIS SEQRES 8 B 373 PRO LEU PRO ALA ASP THR VAL PRO ASP ASP ALA VAL ASP SEQRES 9 B 373 VAL VAL GLY THR GLY GLY ASP GLY VAL ASN THR VAL ASN SEQRES 10 B 373 LEU SER THR MET ALA ALA ILE VAL VAL ALA ALA ALA GLY SEQRES 11 B 373 VAL PRO VAL VAL LYS HIS GLY ASN ARG ALA ALA SER SER SEQRES 12 B 373 LEU SER GLY GLY ALA ASP THR LEU GLU ALA LEU GLY VAL SEQRES 13 B 373 ARG ILE ASP LEU GLY PRO ASP LEU VAL ALA ARG SER LEU SEQRES 14 B 373 ALA GLU VAL GLY ILE GLY PHE CYS PHE ALA PRO ARG PHE SEQRES 15 B 373 HIS PRO SER TYR ARG HIS ALA ALA ALA VAL ARG ARG GLU SEQRES 16 B 373 ILE GLY VAL PRO THR VAL PHE ASN LEU LEU GLY PRO LEU SEQRES 17 B 373 THR ASN PRO ALA ARG PRO ARG ALA GLY LEU ILE GLY CYS SEQRES 18 B 373 ALA PHE ALA ASP LEU ALA GLU VAL MET ALA GLY VAL PHE SEQRES 19 B 373 ALA ALA ARG ARG SER SER VAL LEU VAL VAL HIS GLY ASP SEQRES 20 B 373 ASP GLY LEU ASP GLU LEU THR THR THR THR THR SER THR SEQRES 21 B 373 ILE TRP ARG VAL ALA ALA GLY SER VAL ASP LYS LEU THR SEQRES 22 B 373 PHE ASP PRO ALA GLY PHE GLY PHE ALA ARG ALA GLN LEU SEQRES 23 B 373 ASP GLN LEU ALA GLY GLY ASP ALA GLN ALA ASN ALA ALA SEQRES 24 B 373 ALA VAL ARG ALA VAL LEU GLY GLY ALA ARG GLY PRO VAL SEQRES 25 B 373 ARG ASP ALA VAL VAL LEU ASN ALA ALA GLY ALA ILE VAL SEQRES 26 B 373 ALA HIS ALA GLY LEU SER SER ARG ALA GLU TRP LEU PRO SEQRES 27 B 373 ALA TRP GLU GLU GLY LEU ARG ARG ALA SER ALA ALA ILE SEQRES 28 B 373 ASP THR GLY ALA ALA GLU GLN LEU LEU ALA ARG TRP VAL SEQRES 29 B 373 ARG PHE GLY ARG GLN ILE LEU ALA ALA HET BEN A1369 9 HET GOL A1370 6 HET BEN B1374 9 HET BEN B1375 9 HET GOL B1376 6 HETNAM BEN BENZAMIDINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 BEN 3(C7 H8 N2) FORMUL 4 GOL 2(C3 H8 O3) FORMUL 8 HOH *242(H2 O) HELIX 1 1 SER A 26 ASP A 36 1 11 HELIX 2 2 GLY A 43 THR A 54 1 12 HELIX 3 3 ARG A 58 LYS A 72 1 15 HELIX 4 4 THR A 75 ALA A 90 1 16 HELIX 5 5 THR A 115 ALA A 129 1 15 HELIX 6 6 ARG A 139 SER A 143 5 5 HELIX 7 7 GLY A 147 LEU A 154 1 8 HELIX 8 8 GLY A 161 GLY A 173 1 13 HELIX 9 9 ALA A 179 HIS A 183 1 5 HELIX 10 10 HIS A 188 GLY A 197 1 10 HELIX 11 11 THR A 200 LEU A 204 5 5 HELIX 12 12 LEU A 205 THR A 209 5 5 HELIX 13 13 PHE A 223 ARG A 237 1 15 HELIX 14 14 ASP A 275 GLY A 280 5 6 HELIX 15 15 GLN A 285 ALA A 290 5 6 HELIX 16 16 ASP A 293 GLY A 306 1 14 HELIX 17 17 GLY A 310 GLY A 329 1 20 HELIX 18 18 GLU A 335 THR A 353 1 19 HELIX 19 19 GLY A 354 ARG A 368 1 15 HELIX 20 20 SER B 26 ASP B 36 1 11 HELIX 21 21 GLY B 43 THR B 54 1 12 HELIX 22 22 ARG B 58 LYS B 72 1 15 HELIX 23 23 THR B 75 HIS B 89 1 15 HELIX 24 24 THR B 115 ALA B 129 1 15 HELIX 25 25 GLY B 147 LEU B 154 1 8 HELIX 26 26 GLY B 161 GLY B 173 1 13 HELIX 27 27 ALA B 179 HIS B 183 1 5 HELIX 28 28 ALA B 191 GLY B 197 1 7 HELIX 29 29 THR B 200 LEU B 205 5 6 HELIX 30 30 LEU B 205 THR B 209 5 5 HELIX 31 31 PHE B 223 ARG B 237 1 15 HELIX 32 32 ASP B 275 GLY B 280 5 6 HELIX 33 33 GLN B 285 LEU B 289 5 5 HELIX 34 34 ASP B 293 GLY B 306 1 14 HELIX 35 35 GLY B 310 SER B 332 1 23 HELIX 36 36 GLU B 335 THR B 353 1 19 HELIX 37 37 GLY B 354 GLN B 369 1 16 SHEET 1 AA 5 VAL A 103 GLY A 107 0 SHEET 2 AA 5 ALA A 216 GLY A 220 1 O ALA A 216 N ASP A 104 SHEET 3 AA 5 SER A 240 GLY A 246 1 O SER A 240 N GLY A 217 SHEET 4 AA 5 SER A 259 ALA A 265 -1 O THR A 260 N HIS A 245 SHEET 5 AA 5 SER A 268 PHE A 274 -1 O SER A 268 N ALA A 265 SHEET 1 AB 2 VAL A 133 GLY A 137 0 SHEET 2 AB 2 ILE A 174 PHE A 178 1 O GLY A 175 N LYS A 135 SHEET 1 BA 5 VAL B 103 GLY B 107 0 SHEET 2 BA 5 ALA B 216 GLY B 220 1 O ALA B 216 N ASP B 104 SHEET 3 BA 5 SER B 240 GLY B 246 1 O SER B 240 N GLY B 217 SHEET 4 BA 5 SER B 259 ALA B 265 -1 O THR B 260 N HIS B 245 SHEET 5 BA 5 SER B 268 PHE B 274 -1 O SER B 268 N ALA B 265 SHEET 1 BB 2 VAL B 133 GLY B 137 0 SHEET 2 BB 2 ILE B 174 PHE B 178 1 O GLY B 175 N LYS B 135 SITE 1 AC1 8 THR A 70 MET A 71 LYS A 72 ASP A 225 SITE 2 AC1 8 HOH A2140 THR B 35 ASN B 37 GOL B1376 SITE 1 AC2 6 ASN A 37 MET B 69 THR B 70 MET B 71 SITE 2 AC2 6 LYS B 72 ASP B 225 SITE 1 AC3 4 GLY B 80 THR B 353 ALA B 355 HOH B2018 SITE 1 AC4 5 PHE A 274 ASP A 275 GLY A 278 PHE A 279 SITE 2 AC4 5 TRP A 336 SITE 1 AC5 6 THR A 70 PRO A 199 BEN A1369 HOH A2073 SITE 2 AC5 6 THR B 35 ASP B 36 CRYST1 80.874 82.415 117.520 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012365 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012134 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008509 0.00000 MTRIX1 1 -0.989900 -0.135300 0.041300 -18.12820 1 MTRIX2 1 -0.137600 0.988600 -0.061600 -2.86310 1 MTRIX3 1 -0.032500 -0.066700 -0.997200 -59.22430 1