HEADER TRANSFERASE 11-MAY-05 2BRX TITLE UMP KINASE FROM PYROCOCCUS FURIOSUS WITHOUT LIGANDS COMPND MOL_ID: 1; COMPND 2 MOLECULE: URIDYLATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: UK, URIDINE MONOPHOSPHATE KINASE, UMP KINASE; COMPND 5 EC: 2.7.4.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 2261; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET15B; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PUKPFU KEYWDS UMP KINASE, AMINO ACID KINASE, PHOSPHORYL GROUP TRANSFER, KEYWDS 2 PYRIMIDINE BIOSYNTHESIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.MARCO-MARIN,F.GIL-ORTIZ,V.RUBIO REVDAT 3 24-FEB-09 2BRX 1 VERSN REVDAT 2 09-NOV-05 2BRX 1 JRNL REVDAT 1 25-JUL-05 2BRX 0 JRNL AUTH C.MARCO-MARIN,F.GIL-ORTIZ,V.RUBIO JRNL TITL THE CRYSTAL STRUCTURE OF PYROCOCCUS FURIOSUS UMP JRNL TITL 2 KINASE PROVIDES INSIGHT INTO CATALYSIS AND JRNL TITL 3 REGULATION IN MICROBIAL PYRIMIDINE NUCLEOTIDE JRNL TITL 4 BIOSYNTHESIS. JRNL REF J.MOL.BIOL. V. 352 438 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 16095620 JRNL DOI 10.1016/J.JMB.2005.07.045 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.0 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 4462683.66 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 19894 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.1 REMARK 3 FREE R VALUE TEST SET COUNT : 1011 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.55 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3123 REMARK 3 BIN R VALUE (WORKING SET) : 0.236 REMARK 3 BIN FREE R VALUE : 0.280 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.2 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 138 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.024 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3480 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 103 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.7 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00 REMARK 3 B22 (A**2) : 0.00 REMARK 3 B33 (A**2) : 0.00 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM SIGMAA (A) : 0.20 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.33 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.20 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.2 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.5 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.79 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.28 ; 1.50 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.03 ; 2.00 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.13 ; 2.00 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.07 ; 2.50 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.356623 REMARK 3 BSOL : 35.6518 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2BRX COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-MAY-05. REMARK 100 THE PDBE ID CODE IS EBI-23992. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-OCT-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM16 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979471 REMARK 200 MONOCHROMATOR : SILICON (111) CRYSTAL REMARK 200 OPTICS : TOROIDAL MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19894 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 0.37000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NOT DEPOSITED YET REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.5 M SODIUM FORMATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 72.47450 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 72.47450 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 72.47450 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 72.47450 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 72.47450 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 72.47450 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 72.47450 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 72.47450 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 72.47450 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 72.47450 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 72.47450 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 72.47450 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 72.47450 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 72.47450 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 72.47450 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 72.47450 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 72.47450 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 72.47450 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 72.47450 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 72.47450 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 72.47450 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 72.47450 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 72.47450 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 72.47450 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 72.47450 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 72.47450 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 72.47450 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 72.47450 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 72.47450 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 72.47450 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 72.47450 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 72.47450 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 72.47450 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 72.47450 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 72.47450 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 72.47450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 144.94900 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 144.94900 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 144.94900 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 144.94900 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 GLY A 174 REMARK 465 ILE A 175 REMARK 465 GLU A 176 REMARK 465 LYS A 177 REMARK 465 ALA A 178 REMARK 465 GLY A 179 REMARK 465 SER A 180 REMARK 465 SER A 181 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 THR B 147 REMARK 465 ALA B 148 REMARK 465 ASP B 149 REMARK 465 PRO B 150 REMARK 465 LYS B 151 REMARK 465 LYS B 152 REMARK 465 ASP B 153 REMARK 465 PRO B 154 REMARK 465 THR B 155 REMARK 465 GLY B 174 REMARK 465 ILE B 175 REMARK 465 GLU B 176 REMARK 465 LYS B 177 REMARK 465 ALA B 178 REMARK 465 GLY B 179 REMARK 465 SER B 180 REMARK 465 SER B 181 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 157 CG CD CE NZ REMARK 470 LYS A 173 CG CD CE NZ REMARK 470 SER A 182 OG REMARK 470 LYS B 157 CG CD CE NZ REMARK 470 LYS B 173 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 150 C - N - CA ANGL. DEV. = 9.0 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 114 -43.45 -138.76 REMARK 500 ASP A 149 109.44 -59.32 REMARK 500 LYS A 152 -70.40 -125.53 REMARK 500 GLU B 15 -62.67 -138.09 REMARK 500 ARG B 85 -138.18 52.14 REMARK 500 GLU B 86 0.17 -66.53 REMARK 500 THR B 114 -30.03 -141.22 REMARK 500 VAL B 183 -74.90 42.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BMU RELATED DB: PDB REMARK 900 UMP KINASE FROM PYROCOCCUS FURIOSUS COMPLEXED REMARK 900 WITH ITS SUBSTRATE UMP AND ITS SUBSTRATE REMARK 900 ANALOG AMPPNP REMARK 900 RELATED ID: 2BRI RELATED DB: PDB REMARK 900 UMP KINASE FROM PYROCOCCUS FURIOSUS COMPLEXED REMARK 900 WITH ITS SUBSTRATE ANALOG AMPPNP DBREF 2BRX A -18 0 PDB 2BRX 2BRX -18 0 DBREF 2BRX A 1 225 UNP Q8U122 PYRH_PYRFU 1 225 DBREF 2BRX B -18 0 PDB 2BRX 2BRX -18 0 DBREF 2BRX B 1 225 UNP Q8U122 PYRH_PYRFU 1 225 SEQRES 1 A 244 GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY LEU SEQRES 2 A 244 VAL PRO ARG GLY SER HIS MET ARG ILE VAL PHE ASP ILE SEQRES 3 A 244 GLY GLY SER VAL LEU VAL PRO GLU ASN PRO ASP ILE ASP SEQRES 4 A 244 PHE ILE LYS GLU ILE ALA TYR GLN LEU THR LYS VAL SER SEQRES 5 A 244 GLU ASP HIS GLU VAL ALA VAL VAL VAL GLY GLY GLY LYS SEQRES 6 A 244 LEU ALA ARG LYS TYR ILE GLU VAL ALA GLU LYS PHE ASN SEQRES 7 A 244 SER SER GLU THR PHE LYS ASP PHE ILE GLY ILE GLN ILE SEQRES 8 A 244 THR ARG ALA ASN ALA MET LEU LEU ILE ALA ALA LEU ARG SEQRES 9 A 244 GLU LYS ALA TYR PRO VAL VAL VAL GLU ASP PHE TRP GLU SEQRES 10 A 244 ALA TRP LYS ALA VAL GLN LEU LYS LYS ILE PRO VAL MET SEQRES 11 A 244 GLY GLY THR HIS PRO GLY HIS THR THR ASP ALA VAL ALA SEQRES 12 A 244 ALA LEU LEU ALA GLU PHE LEU LYS ALA ASP LEU LEU VAL SEQRES 13 A 244 VAL ILE THR ASN VAL ASP GLY VAL TYR THR ALA ASP PRO SEQRES 14 A 244 LYS LYS ASP PRO THR ALA LYS LYS ILE LYS LYS MET LYS SEQRES 15 A 244 PRO GLU GLU LEU LEU GLU ILE VAL GLY LYS GLY ILE GLU SEQRES 16 A 244 LYS ALA GLY SER SER SER VAL ILE ASP PRO LEU ALA ALA SEQRES 17 A 244 LYS ILE ILE ALA ARG SER GLY ILE LYS THR ILE VAL ILE SEQRES 18 A 244 GLY LYS GLU ASP ALA LYS ASP LEU PHE ARG VAL ILE LYS SEQRES 19 A 244 GLY ASP HIS ASN GLY THR THR ILE GLU PRO SEQRES 1 B 244 GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY LEU SEQRES 2 B 244 VAL PRO ARG GLY SER HIS MET ARG ILE VAL PHE ASP ILE SEQRES 3 B 244 GLY GLY SER VAL LEU VAL PRO GLU ASN PRO ASP ILE ASP SEQRES 4 B 244 PHE ILE LYS GLU ILE ALA TYR GLN LEU THR LYS VAL SER SEQRES 5 B 244 GLU ASP HIS GLU VAL ALA VAL VAL VAL GLY GLY GLY LYS SEQRES 6 B 244 LEU ALA ARG LYS TYR ILE GLU VAL ALA GLU LYS PHE ASN SEQRES 7 B 244 SER SER GLU THR PHE LYS ASP PHE ILE GLY ILE GLN ILE SEQRES 8 B 244 THR ARG ALA ASN ALA MET LEU LEU ILE ALA ALA LEU ARG SEQRES 9 B 244 GLU LYS ALA TYR PRO VAL VAL VAL GLU ASP PHE TRP GLU SEQRES 10 B 244 ALA TRP LYS ALA VAL GLN LEU LYS LYS ILE PRO VAL MET SEQRES 11 B 244 GLY GLY THR HIS PRO GLY HIS THR THR ASP ALA VAL ALA SEQRES 12 B 244 ALA LEU LEU ALA GLU PHE LEU LYS ALA ASP LEU LEU VAL SEQRES 13 B 244 VAL ILE THR ASN VAL ASP GLY VAL TYR THR ALA ASP PRO SEQRES 14 B 244 LYS LYS ASP PRO THR ALA LYS LYS ILE LYS LYS MET LYS SEQRES 15 B 244 PRO GLU GLU LEU LEU GLU ILE VAL GLY LYS GLY ILE GLU SEQRES 16 B 244 LYS ALA GLY SER SER SER VAL ILE ASP PRO LEU ALA ALA SEQRES 17 B 244 LYS ILE ILE ALA ARG SER GLY ILE LYS THR ILE VAL ILE SEQRES 18 B 244 GLY LYS GLU ASP ALA LYS ASP LEU PHE ARG VAL ILE LYS SEQRES 19 B 244 GLY ASP HIS ASN GLY THR THR ILE GLU PRO FORMUL 3 HOH *103(H2 O1) HELIX 1 1 GLY A 8 VAL A 13 1 6 HELIX 2 2 ASP A 18 SER A 33 1 16 HELIX 3 3 GLY A 45 LYS A 57 1 13 HELIX 4 4 SER A 61 ARG A 85 1 25 HELIX 5 5 PHE A 96 LEU A 105 1 10 HELIX 6 6 THR A 119 LEU A 131 1 13 HELIX 7 7 LYS A 163 GLY A 172 1 10 HELIX 8 8 ASP A 185 SER A 195 1 11 HELIX 9 9 GLY A 203 LYS A 208 1 6 HELIX 10 10 ASP A 209 ILE A 214 1 6 HELIX 11 11 GLY B 8 VAL B 13 1 6 HELIX 12 12 ASP B 18 GLU B 34 1 17 HELIX 13 13 GLY B 45 LYS B 57 1 13 HELIX 14 14 SER B 61 LEU B 84 1 24 HELIX 15 15 PHE B 96 LEU B 105 1 10 HELIX 16 16 THR B 119 LEU B 131 1 13 HELIX 17 17 LYS B 163 GLY B 172 1 10 HELIX 18 18 ASP B 185 SER B 195 1 11 HELIX 19 19 GLY B 203 ALA B 207 1 5 HELIX 20 20 ASP B 209 ILE B 214 1 6 SHEET 1 AA 8 VAL A 92 VAL A 93 0 SHEET 2 AA 8 PRO A 109 MET A 111 1 O VAL A 110 N VAL A 93 SHEET 3 AA 8 GLU A 37 GLY A 43 1 N VAL A 40 O PRO A 109 SHEET 4 AA 8 MET A 1 ILE A 7 1 O MET A 1 N GLU A 37 SHEET 5 AA 8 LEU A 135 ILE A 139 1 N LEU A 135 O ARG A 2 SHEET 6 AA 8 LYS A 198 ILE A 202 1 O LYS A 198 N LEU A 136 SHEET 7 AA 8 THR A 221 GLU A 224 -1 N THR A 221 O VAL A 201 SHEET 8 AA 8 LYS A 160 MET A 162 1 O LYS A 160 N THR A 222 SHEET 1 AB 2 VAL A 145 THR A 147 0 SHEET 2 AB 2 LYS A 157 ILE A 159 -1 N ILE A 159 O VAL A 145 SHEET 1 BA 8 VAL B 92 VAL B 93 0 SHEET 2 BA 8 VAL B 110 MET B 111 1 O VAL B 110 N VAL B 93 SHEET 3 BA 8 GLU B 37 VAL B 42 1 N VAL B 40 O PRO B 109 SHEET 4 BA 8 MET B 1 ILE B 7 1 O MET B 1 N GLU B 37 SHEET 5 BA 8 LEU B 135 ILE B 139 1 N LEU B 135 O ARG B 2 SHEET 6 BA 8 LYS B 198 ILE B 202 1 O LYS B 198 N LEU B 136 SHEET 7 BA 8 THR B 221 ILE B 223 -1 N THR B 221 O VAL B 201 SHEET 8 BA 8 LYS B 160 MET B 162 1 O LYS B 160 N THR B 222 SHEET 1 BB 2 VAL B 145 TYR B 146 0 SHEET 2 BB 2 LYS B 157 ILE B 159 -1 N ILE B 159 O VAL B 145 CRYST1 144.949 144.949 144.949 90.00 90.00 90.00 I 2 3 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006899 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006899 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006899 0.00000 MTRIX1 1 0.302910 -0.837570 0.454660 128.52126 1 MTRIX2 1 -0.841510 -0.459000 -0.284910 237.92346 1 MTRIX3 1 0.447320 -0.296300 -0.843870 71.70589 1