HEADER PROTEIN TRANSPORT 23-MAY-05 2BSK TITLE CRYSTAL STRUCTURE OF THE TIM9 TIM10 HEXAMERIC COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT COMPND 3 TIM9 A; COMPND 4 CHAIN: A, C, E; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT COMPND 8 TIM10; COMPND 9 CHAIN: B, D, F; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: ORIGAMI DE3 PLYSS; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PGEX 4T2; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 EXPRESSION_SYSTEM_STRAIN: ORIGAMI DE3 PLYSS; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PGEX 4T2 KEYWDS PROTEIN TRANSPORT, TIM9, TIM10, MITOCHONDRIAL PROTEIN IMPORT, TIM KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.T.WEBB,M.A.GORMAN,M.LAZARUS,M.T.RYAN,J.M.GULBIS REVDAT 3 20-NOV-24 2BSK 1 LINK REVDAT 2 24-FEB-09 2BSK 1 VERSN REVDAT 1 04-JAN-06 2BSK 0 JRNL AUTH C.T.WEBB,M.A.GORMAN,M.LAZAROU,M.T.RYAN,J.M.GULBIS JRNL TITL CRYSTAL STRUCTURE OF THE MITOCHONDRIAL CHAPERONE TIM910 JRNL TITL 2 REVEALS A SIX-BLADED ALPHA-PROPELLER. JRNL REF MOL.CELL V. 21 123 2006 JRNL REFN ISSN 1097-2765 JRNL PMID 16387659 JRNL DOI 10.1016/J.MOLCEL.2005.11.010 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 16.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.6 REMARK 3 NUMBER OF REFLECTIONS : 9357 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.268 REMARK 3 FREE R VALUE : 0.319 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 481 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 16.00 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 8876 REMARK 3 BIN R VALUE (WORKING SET) : 0.2679 REMARK 3 BIN FREE R VALUE : 0.3193 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 481 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3334 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.95300 REMARK 3 B22 (A**2) : -3.95300 REMARK 3 B33 (A**2) : 7.90600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.440 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 0.20 REMARK 3 BSOL : 15.96 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SIDE CHAINS FOR THE FOLLOWING RESIDUES REMARK 3 WERE NOT VISIBLE IN THE ELECTRON DENSITY AND HAVE BEEN MODELLED REMARK 3 AS ALANINE RESIDUES. CHAIN A Q13, K15, E16, K58, Q73, L78, L84, REMARK 3 L85 CHAIN B E14, K45, K57, D76 CHAIN C D9, Q10, K12, Q13, E16, REMARK 3 R39, E44, Q54, K58, Q73 CHAIN D Q7, K57, D60, E63, R64, K67, K68, REMARK 3 E77, K81, R82, Q84 CHAIN E Q13, E44, Q54, K58, Q73, Q74, N75 REMARK 3 CHAIN F E12, L13, E14, R31, K45, K68, S73 REMARK 4 REMARK 4 2BSK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1290024064. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97958 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9357 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.450 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.9 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.37000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.420 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL PH 8.5, 28% W/V PEG REMARK 280 3000, 0.2 M NACL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.29400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 53.71500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 53.71500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.64700 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 53.71500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 53.71500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 82.94100 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 53.71500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.71500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 27.64700 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 53.71500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.71500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 82.94100 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 55.29400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 GLN A 4 REMARK 465 ILE A 5 REMARK 465 PRO A 6 REMARK 465 GLU A 7 REMARK 465 SER A 8 REMARK 465 ASP A 9 REMARK 465 GLN A 10 REMARK 465 ILE A 11 REMARK 465 LYS A 12 REMARK 465 GLY A 86 REMARK 465 GLN A 87 REMARK 465 PRO A 88 REMARK 465 ARG A 89 REMARK 465 MSE B 1 REMARK 465 ASP B 2 REMARK 465 PRO B 3 REMARK 465 LEU B 4 REMARK 465 ARG B 5 REMARK 465 ALA B 6 REMARK 465 GLN B 7 REMARK 465 GLN B 8 REMARK 465 LEU B 9 REMARK 465 ALA B 10 REMARK 465 ALA B 11 REMARK 465 GLU B 12 REMARK 465 GLU B 78 REMARK 465 LEU B 79 REMARK 465 MSE B 80 REMARK 465 LYS B 81 REMARK 465 ARG B 82 REMARK 465 VAL B 83 REMARK 465 GLN B 84 REMARK 465 GLN B 85 REMARK 465 SER B 86 REMARK 465 SER B 87 REMARK 465 GLY B 88 REMARK 465 PRO B 89 REMARK 465 ALA B 90 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 ALA C 3 REMARK 465 GLN C 4 REMARK 465 ILE C 5 REMARK 465 PRO C 6 REMARK 465 GLU C 7 REMARK 465 SER C 8 REMARK 465 PRO C 88 REMARK 465 ARG C 89 REMARK 465 MET E 1 REMARK 465 ALA E 2 REMARK 465 ALA E 3 REMARK 465 GLN E 4 REMARK 465 ILE E 5 REMARK 465 PRO E 6 REMARK 465 GLU E 7 REMARK 465 SER E 8 REMARK 465 ASP E 9 REMARK 465 GLN E 10 REMARK 465 ILE E 11 REMARK 465 LYS E 12 REMARK 465 GLU E 76 REMARK 465 ALA E 77 REMARK 465 LEU E 78 REMARK 465 ALA E 79 REMARK 465 ALA E 80 REMARK 465 LYS E 81 REMARK 465 ALA E 82 REMARK 465 GLY E 83 REMARK 465 LEU E 84 REMARK 465 LEU E 85 REMARK 465 GLY E 86 REMARK 465 GLN E 87 REMARK 465 PRO E 88 REMARK 465 ARG E 89 REMARK 465 MSE F 1 REMARK 465 ASP F 2 REMARK 465 PRO F 3 REMARK 465 LEU F 4 REMARK 465 ARG F 5 REMARK 465 ALA F 6 REMARK 465 GLN F 7 REMARK 465 GLN F 8 REMARK 465 LEU F 9 REMARK 465 MSE F 74 REMARK 465 GLN F 75 REMARK 465 ASP F 76 REMARK 465 GLU F 77 REMARK 465 GLU F 78 REMARK 465 LEU F 79 REMARK 465 MSE F 80 REMARK 465 LYS F 81 REMARK 465 ARG F 82 REMARK 465 VAL F 83 REMARK 465 GLN F 84 REMARK 465 GLN F 85 REMARK 465 SER F 86 REMARK 465 SER F 87 REMARK 465 GLY F 88 REMARK 465 PRO F 89 REMARK 465 ALA F 90 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 13 CG CD OE1 NE2 REMARK 470 LYS A 15 CG CD CE NZ REMARK 470 GLU A 16 CG CD OE1 OE2 REMARK 470 LYS A 58 CG CD CE NZ REMARK 470 GLN A 73 CG CD OE1 NE2 REMARK 470 LEU A 78 CG CD1 CD2 REMARK 470 LEU A 84 CG CD1 CD2 REMARK 470 LEU A 85 CG CD1 CD2 REMARK 470 GLU B 14 CG CD OE1 OE2 REMARK 470 LYS B 45 CG CD CE NZ REMARK 470 LYS B 57 CG CD CE NZ REMARK 470 ASP B 76 CG OD1 OD2 REMARK 470 ASP C 9 CG OD1 OD2 REMARK 470 GLN C 10 CG CD OE1 NE2 REMARK 470 LYS C 12 CG CD CE NZ REMARK 470 GLN C 13 CG CD OE1 NE2 REMARK 470 GLU C 16 CG CD OE1 OE2 REMARK 470 ARG C 39 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 44 CG CD OE1 OE2 REMARK 470 GLN C 54 CG CD OE1 NE2 REMARK 470 LYS C 58 CG CD CE NZ REMARK 470 GLN C 73 CG CD OE1 NE2 REMARK 470 GLU C 76 CG CD OE1 OE2 REMARK 470 GLN D 7 CG CD OE1 NE2 REMARK 470 GLU D 42 CG CD OE1 OE2 REMARK 470 LYS D 57 CG CD CE NZ REMARK 470 ASP D 60 CG OD1 OD2 REMARK 470 GLU D 63 CG CD OE1 OE2 REMARK 470 ARG D 64 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 67 CG CD CE NZ REMARK 470 LYS D 68 CG CD CE NZ REMARK 470 GLU D 77 CG CD OE1 OE2 REMARK 470 LYS D 81 CG CD CE NZ REMARK 470 ARG D 82 CG CD NE CZ NH1 NH2 REMARK 470 GLN D 84 CG CD OE1 NE2 REMARK 470 SER D 86 OG REMARK 470 GLN E 13 CG CD OE1 NE2 REMARK 470 GLU E 44 CG CD OE1 OE2 REMARK 470 GLN E 54 CG CD OE1 NE2 REMARK 470 LYS E 58 CG CD CE NZ REMARK 470 GLN E 73 CG CD OE1 NE2 REMARK 470 GLN E 74 CG CD OE1 NE2 REMARK 470 ASN E 75 CG OD1 ND2 REMARK 470 GLU F 12 CG CD OE1 OE2 REMARK 470 LEU F 13 CG CD1 CD2 REMARK 470 GLU F 14 CG CD OE1 OE2 REMARK 470 ARG F 31 CG CD NE CZ NH1 NH2 REMARK 470 LYS F 45 CG CD CE NZ REMARK 470 LYS F 68 CG CD CE NZ REMARK 470 SER F 73 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO D 36 C - N - CA ANGL. DEV. = 9.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 21 -73.51 -30.21 REMARK 500 GLU A 26 -72.83 -55.98 REMARK 500 LYS A 34 -45.40 -142.49 REMARK 500 VAL A 41 93.49 -53.66 REMARK 500 LYS A 42 141.18 -32.42 REMARK 500 MET A 65 -78.17 -41.89 REMARK 500 ARG A 66 -29.03 -37.60 REMARK 500 GLU A 69 -5.82 -42.24 REMARK 500 ALA A 82 18.09 -59.32 REMARK 500 PRO B 36 8.21 -58.81 REMARK 500 TYR B 38 55.88 32.49 REMARK 500 LYS B 67 -70.17 -74.73 REMARK 500 PHE C 17 -87.84 -66.62 REMARK 500 LEU C 18 -45.94 -29.51 REMARK 500 CYS C 32 -74.00 -76.96 REMARK 500 LYS C 34 11.18 -143.97 REMARK 500 THR C 37 25.53 -162.69 REMARK 500 THR C 38 134.09 -171.73 REMARK 500 TYR C 56 -70.23 -57.77 REMARK 500 THR C 60 -16.07 -46.11 REMARK 500 ILE C 63 -75.78 -52.72 REMARK 500 LYS C 81 6.33 -66.73 REMARK 500 LEU C 85 -98.52 -92.84 REMARK 500 ASP D 2 173.51 171.28 REMARK 500 ALA D 6 -49.64 -28.57 REMARK 500 ALA D 10 -31.57 -38.45 REMARK 500 ALA D 11 -9.56 -54.83 REMARK 500 LEU D 13 -9.69 -52.07 REMARK 500 ALA D 19 -71.86 -62.24 REMARK 500 ASN D 23 -71.08 -51.50 REMARK 500 ARG D 24 -67.10 -28.04 REMARK 500 LYS D 67 -71.45 -42.20 REMARK 500 LEU D 72 9.05 -51.50 REMARK 500 GLU D 77 21.86 -62.64 REMARK 500 SER D 87 5.66 -57.54 REMARK 500 PRO D 89 54.16 -5.51 REMARK 500 ASP E 35 108.74 69.01 REMARK 500 ARG E 39 39.24 -99.47 REMARK 500 LYS E 55 -73.46 -44.69 REMARK 500 GLU E 69 8.05 -68.18 REMARK 500 TYR E 70 -60.87 -99.09 REMARK 500 LEU F 13 -71.97 -76.66 REMARK 500 GLU F 14 -45.02 -24.29 REMARK 500 ALA F 19 -29.39 -146.48 REMARK 500 TYR F 22 -39.20 -37.36 REMARK 500 ALA F 28 -81.61 -61.09 REMARK 500 CYS F 29 -19.35 -45.42 REMARK 500 PRO F 36 40.77 -75.82 REMARK 500 ALA F 41 -8.26 -55.68 REMARK 500 GLU F 47 -30.44 -39.46 REMARK 500 REMARK 500 THIS ENTRY HAS 52 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2BSK A 1 89 UNP Q9Y5J7 TIM9A_HUMAN 1 89 DBREF 2BSK C 1 89 UNP Q9Y5J7 TIM9A_HUMAN 1 89 DBREF 2BSK E 1 89 UNP Q9Y5J7 TIM9A_HUMAN 1 89 DBREF 2BSK B 1 90 UNP P62072 TIM10_HUMAN 1 90 DBREF 2BSK D 1 90 UNP P62072 TIM10_HUMAN 1 90 DBREF 2BSK F 1 90 UNP P62072 TIM10_HUMAN 1 90 SEQRES 1 A 89 MET ALA ALA GLN ILE PRO GLU SER ASP GLN ILE LYS GLN SEQRES 2 A 89 PHE LYS GLU PHE LEU GLY THR TYR ASN LYS LEU THR GLU SEQRES 3 A 89 THR CYS PHE LEU ASP CYS VAL LYS ASP PHE THR THR ARG SEQRES 4 A 89 GLU VAL LYS PRO GLU GLU THR THR CYS SER GLU HIS CYS SEQRES 5 A 89 LEU GLN LYS TYR LEU LYS MET THR GLN ARG ILE SER MET SEQRES 6 A 89 ARG PHE GLN GLU TYR HIS ILE GLN GLN ASN GLU ALA LEU SEQRES 7 A 89 ALA ALA LYS ALA GLY LEU LEU GLY GLN PRO ARG SEQRES 1 B 90 MSE ASP PRO LEU ARG ALA GLN GLN LEU ALA ALA GLU LEU SEQRES 2 B 90 GLU VAL GLU MSE MSE ALA ASP MSE TYR ASN ARG MSE THR SEQRES 3 B 90 SER ALA CYS HIS ARG LYS CYS VAL PRO PRO HIS TYR LYS SEQRES 4 B 90 GLU ALA GLU LEU SER LYS GLY GLU SER VAL CYS LEU ASP SEQRES 5 B 90 ARG CYS VAL SER LYS TYR LEU ASP ILE HIS GLU ARG MSE SEQRES 6 B 90 GLY LYS LYS LEU THR GLU LEU SER MSE GLN ASP GLU GLU SEQRES 7 B 90 LEU MSE LYS ARG VAL GLN GLN SER SER GLY PRO ALA SEQRES 1 C 89 MET ALA ALA GLN ILE PRO GLU SER ASP GLN ILE LYS GLN SEQRES 2 C 89 PHE LYS GLU PHE LEU GLY THR TYR ASN LYS LEU THR GLU SEQRES 3 C 89 THR CYS PHE LEU ASP CYS VAL LYS ASP PHE THR THR ARG SEQRES 4 C 89 GLU VAL LYS PRO GLU GLU THR THR CYS SER GLU HIS CYS SEQRES 5 C 89 LEU GLN LYS TYR LEU LYS MET THR GLN ARG ILE SER MET SEQRES 6 C 89 ARG PHE GLN GLU TYR HIS ILE GLN GLN ASN GLU ALA LEU SEQRES 7 C 89 ALA ALA LYS ALA GLY LEU LEU GLY GLN PRO ARG SEQRES 1 D 90 MSE ASP PRO LEU ARG ALA GLN GLN LEU ALA ALA GLU LEU SEQRES 2 D 90 GLU VAL GLU MSE MSE ALA ASP MSE TYR ASN ARG MSE THR SEQRES 3 D 90 SER ALA CYS HIS ARG LYS CYS VAL PRO PRO HIS TYR LYS SEQRES 4 D 90 GLU ALA GLU LEU SER LYS GLY GLU SER VAL CYS LEU ASP SEQRES 5 D 90 ARG CYS VAL SER LYS TYR LEU ASP ILE HIS GLU ARG MSE SEQRES 6 D 90 GLY LYS LYS LEU THR GLU LEU SER MSE GLN ASP GLU GLU SEQRES 7 D 90 LEU MSE LYS ARG VAL GLN GLN SER SER GLY PRO ALA SEQRES 1 E 89 MET ALA ALA GLN ILE PRO GLU SER ASP GLN ILE LYS GLN SEQRES 2 E 89 PHE LYS GLU PHE LEU GLY THR TYR ASN LYS LEU THR GLU SEQRES 3 E 89 THR CYS PHE LEU ASP CYS VAL LYS ASP PHE THR THR ARG SEQRES 4 E 89 GLU VAL LYS PRO GLU GLU THR THR CYS SER GLU HIS CYS SEQRES 5 E 89 LEU GLN LYS TYR LEU LYS MET THR GLN ARG ILE SER MET SEQRES 6 E 89 ARG PHE GLN GLU TYR HIS ILE GLN GLN ASN GLU ALA LEU SEQRES 7 E 89 ALA ALA LYS ALA GLY LEU LEU GLY GLN PRO ARG SEQRES 1 F 90 MSE ASP PRO LEU ARG ALA GLN GLN LEU ALA ALA GLU LEU SEQRES 2 F 90 GLU VAL GLU MSE MSE ALA ASP MSE TYR ASN ARG MSE THR SEQRES 3 F 90 SER ALA CYS HIS ARG LYS CYS VAL PRO PRO HIS TYR LYS SEQRES 4 F 90 GLU ALA GLU LEU SER LYS GLY GLU SER VAL CYS LEU ASP SEQRES 5 F 90 ARG CYS VAL SER LYS TYR LEU ASP ILE HIS GLU ARG MSE SEQRES 6 F 90 GLY LYS LYS LEU THR GLU LEU SER MSE GLN ASP GLU GLU SEQRES 7 F 90 LEU MSE LYS ARG VAL GLN GLN SER SER GLY PRO ALA MODRES 2BSK MSE B 17 MET SELENOMETHIONINE MODRES 2BSK MSE B 18 MET SELENOMETHIONINE MODRES 2BSK MSE B 21 MET SELENOMETHIONINE MODRES 2BSK MSE B 25 MET SELENOMETHIONINE MODRES 2BSK MSE B 65 MET SELENOMETHIONINE MODRES 2BSK MSE B 74 MET SELENOMETHIONINE MODRES 2BSK MSE D 1 MET SELENOMETHIONINE MODRES 2BSK MSE D 17 MET SELENOMETHIONINE MODRES 2BSK MSE D 18 MET SELENOMETHIONINE MODRES 2BSK MSE D 21 MET SELENOMETHIONINE MODRES 2BSK MSE D 25 MET SELENOMETHIONINE MODRES 2BSK MSE D 65 MET SELENOMETHIONINE MODRES 2BSK MSE D 74 MET SELENOMETHIONINE MODRES 2BSK MSE D 80 MET SELENOMETHIONINE MODRES 2BSK MSE F 17 MET SELENOMETHIONINE MODRES 2BSK MSE F 18 MET SELENOMETHIONINE MODRES 2BSK MSE F 21 MET SELENOMETHIONINE MODRES 2BSK MSE F 25 MET SELENOMETHIONINE MODRES 2BSK MSE F 65 MET SELENOMETHIONINE HET MSE B 17 8 HET MSE B 18 8 HET MSE B 21 8 HET MSE B 25 8 HET MSE B 65 8 HET MSE B 74 8 HET MSE D 1 8 HET MSE D 17 8 HET MSE D 18 8 HET MSE D 21 8 HET MSE D 25 8 HET MSE D 65 8 HET MSE D 74 8 HET MSE D 80 8 HET MSE F 17 8 HET MSE F 18 8 HET MSE F 21 8 HET MSE F 25 8 HET MSE F 65 8 HETNAM MSE SELENOMETHIONINE FORMUL 2 MSE 19(C5 H11 N O2 SE) HELIX 1 1 PHE A 14 VAL A 33 1 20 HELIX 2 2 LYS A 42 ILE A 72 1 31 HELIX 3 3 ASN A 75 ALA A 82 1 8 HELIX 4 4 MSE B 18 VAL B 34 1 17 HELIX 5 5 SER B 44 GLN B 75 1 32 HELIX 6 6 GLN C 10 PHE C 14 5 5 HELIX 7 7 LYS C 15 CYS C 32 1 18 HELIX 8 8 LYS C 42 GLN C 68 1 27 HELIX 9 9 GLN C 74 ALA C 79 1 6 HELIX 10 10 LEU D 4 ALA D 11 1 8 HELIX 11 11 GLU D 12 VAL D 34 1 23 HELIX 12 12 SER D 44 GLN D 75 1 32 HELIX 13 13 LEU D 79 SER D 87 1 9 HELIX 14 14 GLU E 16 VAL E 33 1 18 HELIX 15 15 LYS E 42 ASN E 75 1 34 HELIX 16 16 ALA F 10 MSE F 18 1 9 HELIX 17 17 ALA F 19 VAL F 34 1 16 HELIX 18 18 SER F 44 GLU F 71 1 28 SSBOND 1 CYS A 28 CYS A 52 1555 1555 2.04 SSBOND 2 CYS A 32 CYS A 48 1555 1555 2.03 SSBOND 3 CYS B 29 CYS B 54 1555 1555 2.05 SSBOND 4 CYS B 33 CYS B 50 1555 1555 2.04 SSBOND 5 CYS C 28 CYS C 52 1555 1555 2.04 SSBOND 6 CYS C 32 CYS C 48 1555 1555 2.05 SSBOND 7 CYS D 29 CYS D 54 1555 1555 2.05 SSBOND 8 CYS D 33 CYS D 50 1555 1555 2.04 SSBOND 9 CYS E 28 CYS E 52 1555 1555 2.04 SSBOND 10 CYS E 32 CYS E 48 1555 1555 2.03 SSBOND 11 CYS F 29 CYS F 54 1555 1555 2.04 SSBOND 12 CYS F 33 CYS F 50 1555 1555 2.05 LINK C GLU B 16 N MSE B 17 1555 1555 1.33 LINK C MSE B 17 N MSE B 18 1555 1555 1.33 LINK C MSE B 18 N ALA B 19 1555 1555 1.33 LINK C ASP B 20 N MSE B 21 1555 1555 1.32 LINK C MSE B 21 N TYR B 22 1555 1555 1.33 LINK C ARG B 24 N MSE B 25 1555 1555 1.33 LINK C MSE B 25 N THR B 26 1555 1555 1.33 LINK C ARG B 64 N MSE B 65 1555 1555 1.33 LINK C MSE B 65 N GLY B 66 1555 1555 1.33 LINK C SER B 73 N MSE B 74 1555 1555 1.33 LINK C MSE B 74 N GLN B 75 1555 1555 1.33 LINK C MSE D 1 N ASP D 2 1555 1555 1.33 LINK C GLU D 16 N MSE D 17 1555 1555 1.34 LINK C MSE D 17 N MSE D 18 1555 1555 1.33 LINK C MSE D 18 N ALA D 19 1555 1555 1.33 LINK C ASP D 20 N MSE D 21 1555 1555 1.32 LINK C MSE D 21 N TYR D 22 1555 1555 1.33 LINK C ARG D 24 N MSE D 25 1555 1555 1.33 LINK C MSE D 25 N THR D 26 1555 1555 1.33 LINK C ARG D 64 N MSE D 65 1555 1555 1.33 LINK C MSE D 65 N GLY D 66 1555 1555 1.33 LINK C SER D 73 N MSE D 74 1555 1555 1.33 LINK C MSE D 74 N GLN D 75 1555 1555 1.33 LINK C LEU D 79 N MSE D 80 1555 1555 1.33 LINK C MSE D 80 N LYS D 81 1555 1555 1.33 LINK C GLU F 16 N MSE F 17 1555 1555 1.33 LINK C MSE F 17 N MSE F 18 1555 1555 1.32 LINK C MSE F 18 N ALA F 19 1555 1555 1.33 LINK C ASP F 20 N MSE F 21 1555 1555 1.32 LINK C MSE F 21 N TYR F 22 1555 1555 1.33 LINK C ARG F 24 N MSE F 25 1555 1555 1.33 LINK C MSE F 25 N THR F 26 1555 1555 1.33 LINK C ARG F 64 N MSE F 65 1555 1555 1.33 LINK C MSE F 65 N GLY F 66 1555 1555 1.33 CRYST1 107.430 107.430 110.588 90.00 90.00 90.00 P 41 21 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009308 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009308 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009043 0.00000 CONECT 122 316 CONECT 155 285 CONECT 285 155 CONECT 316 122 CONECT 597 604 CONECT 604 597 605 CONECT 605 604 606 608 CONECT 606 605 607 612 CONECT 607 606 CONECT 608 605 609 CONECT 609 608 610 CONECT 610 609 611 CONECT 611 610 CONECT 612 606 613 CONECT 613 612 614 616 CONECT 614 613 615 620 CONECT 615 614 CONECT 616 613 617 CONECT 617 616 618 CONECT 618 617 619 CONECT 619 618 CONECT 620 614 CONECT 627 633 CONECT 633 627 634 CONECT 634 633 635 637 CONECT 635 634 636 641 CONECT 636 635 CONECT 637 634 638 CONECT 638 637 639 CONECT 639 638 640 CONECT 640 639 CONECT 641 635 CONECT 663 672 CONECT 672 663 673 CONECT 673 672 674 676 CONECT 674 673 675 680 CONECT 675 674 CONECT 676 673 677 CONECT 677 676 678 CONECT 678 677 679 CONECT 679 678 CONECT 680 674 CONECT 703 898 CONECT 739 865 CONECT 865 739 CONECT 898 703 CONECT 974 983 CONECT 983 974 984 CONECT 984 983 985 987 CONECT 985 984 986 991 CONECT 986 985 CONECT 987 984 988 CONECT 988 987 989 CONECT 989 988 990 CONECT 990 989 CONECT 991 985 CONECT 1047 1051 CONECT 1051 1047 1052 CONECT 1052 1051 1053 1055 CONECT 1053 1052 1054 1059 CONECT 1054 1053 CONECT 1055 1052 1056 CONECT 1056 1055 1057 CONECT 1057 1056 1058 CONECT 1058 1057 CONECT 1059 1053 CONECT 1231 1415 CONECT 1264 1384 CONECT 1384 1264 CONECT 1415 1231 CONECT 1688 1689 CONECT 1689 1688 1690 1692 CONECT 1690 1689 1691 1696 CONECT 1691 1690 CONECT 1692 1689 1693 CONECT 1693 1692 1694 CONECT 1694 1693 1695 CONECT 1695 1694 CONECT 1696 1690 CONECT 1802 1809 CONECT 1809 1802 1810 CONECT 1810 1809 1811 1813 CONECT 1811 1810 1812 1817 CONECT 1812 1811 CONECT 1813 1810 1814 CONECT 1814 1813 1815 CONECT 1815 1814 1816 CONECT 1816 1815 CONECT 1817 1811 1818 CONECT 1818 1817 1819 1821 CONECT 1819 1818 1820 1825 CONECT 1820 1819 CONECT 1821 1818 1822 CONECT 1822 1821 1823 CONECT 1823 1822 1824 CONECT 1824 1823 CONECT 1825 1819 CONECT 1832 1838 CONECT 1838 1832 1839 CONECT 1839 1838 1840 1842 CONECT 1840 1839 1841 1846 CONECT 1841 1840 CONECT 1842 1839 1843 CONECT 1843 1842 1844 CONECT 1844 1843 1845 CONECT 1845 1844 CONECT 1846 1840 CONECT 1868 1877 CONECT 1877 1868 1878 CONECT 1878 1877 1879 1881 CONECT 1879 1878 1880 1885 CONECT 1880 1879 CONECT 1881 1878 1882 CONECT 1882 1881 1883 CONECT 1883 1882 1884 CONECT 1884 1883 CONECT 1885 1879 CONECT 1908 2103 CONECT 1944 2070 CONECT 2070 1944 CONECT 2103 1908 CONECT 2172 2175 CONECT 2175 2172 2176 CONECT 2176 2175 2177 2179 CONECT 2177 2176 2178 2183 CONECT 2178 2177 CONECT 2179 2176 2180 CONECT 2180 2179 2181 CONECT 2181 2180 2182 CONECT 2182 2181 CONECT 2183 2177 CONECT 2231 2235 CONECT 2235 2231 2236 CONECT 2236 2235 2237 2239 CONECT 2237 2236 2238 2243 CONECT 2238 2237 CONECT 2239 2236 2240 CONECT 2240 2239 2241 CONECT 2241 2240 2242 CONECT 2242 2241 CONECT 2243 2237 CONECT 2276 2282 CONECT 2282 2276 2283 CONECT 2283 2282 2284 2286 CONECT 2284 2283 2285 2290 CONECT 2285 2284 CONECT 2286 2283 2287 CONECT 2287 2286 2288 CONECT 2288 2287 2289 CONECT 2289 2288 CONECT 2290 2284 CONECT 2478 2668 CONECT 2511 2637 CONECT 2637 2511 CONECT 2668 2478 CONECT 2893 2900 CONECT 2900 2893 2901 CONECT 2901 2900 2902 2904 CONECT 2902 2901 2903 2908 CONECT 2903 2902 CONECT 2904 2901 2905 CONECT 2905 2904 2906 CONECT 2906 2905 2907 CONECT 2907 2906 CONECT 2908 2902 2909 CONECT 2909 2908 2910 2912 CONECT 2910 2909 2911 2916 CONECT 2911 2910 CONECT 2912 2909 2913 CONECT 2913 2912 2914 CONECT 2914 2913 2915 CONECT 2915 2914 CONECT 2916 2910 CONECT 2923 2929 CONECT 2929 2923 2930 CONECT 2930 2929 2931 2933 CONECT 2931 2930 2932 2937 CONECT 2932 2931 CONECT 2933 2930 2934 CONECT 2934 2933 2935 CONECT 2935 2934 2936 CONECT 2936 2935 CONECT 2937 2931 CONECT 2959 2968 CONECT 2968 2959 2969 CONECT 2969 2968 2970 2972 CONECT 2970 2969 2971 2976 CONECT 2971 2970 CONECT 2972 2969 2973 CONECT 2973 2972 2974 CONECT 2974 2973 2975 CONECT 2975 2974 CONECT 2976 2970 CONECT 2999 3188 CONECT 3029 3155 CONECT 3155 3029 CONECT 3188 2999 CONECT 3268 3277 CONECT 3277 3268 3278 CONECT 3278 3277 3279 3281 CONECT 3279 3278 3280 3285 CONECT 3280 3279 CONECT 3281 3278 3282 CONECT 3282 3281 3283 CONECT 3283 3282 3284 CONECT 3284 3283 CONECT 3285 3279 MASTER 488 0 19 18 0 0 0 6 3334 6 207 42 END