HEADER TRANSFERASE 27-MAY-05 2BTD TITLE CRYSTAL STRUCTURE OF DHAL FROM E. COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: PTS-DEPENDENT DIHYDROXYACETONE KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ADP-BINDING SUBUNIT DHAL, DHAL; COMPND 5 EC: 2.7.-.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI DH5[ALPHA]; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 668369; SOURCE 6 EXPRESSION_SYSTEM_VECTOR: PJF H6 KEYWDS DIHYDROXIACETONE KINASE, DHAL, YCGS, PTS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.E.OBERHOLZER,P.SCHNEIDER,C.BACHLER,U.BAUMANN,B.ERNI REVDAT 4 13-DEC-23 2BTD 1 LINK REVDAT 3 07-FEB-18 2BTD 1 SOURCE REVDAT 2 24-FEB-09 2BTD 1 VERSN REVDAT 1 22-JUN-06 2BTD 0 JRNL AUTH A.E.OBERHOLZER,P.SCHNEIDER,U.BAUMANN,B.ERNI JRNL TITL CRYSTAL STRUCTURE OF THE NUCLEOTIDE-BINDING SUBUNIT DHAL OF JRNL TITL 2 THE ESCHERICHIA COLI DIHYDROXYACETONE KINASE. JRNL REF J.MOL.BIOL. V. 359 539 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16647083 JRNL DOI 10.1016/J.JMB.2006.03.057 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 13949 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 724 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 999 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3150 REMARK 3 BIN FREE R VALUE SET COUNT : 54 REMARK 3 BIN FREE R VALUE : 0.3550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1573 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 39 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.293 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.251 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.171 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.892 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1631 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2195 ; 1.546 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 208 ; 7.651 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 249 ; 0.119 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1198 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 915 ; 0.283 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 89 ; 0.239 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 29 ; 0.243 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.354 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1031 ; 1.047 ; 3.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1644 ; 1.780 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 600 ; 2.481 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 551 ; 3.806 ; 5.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2BTD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1290024269. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-DEC-04 REMARK 200 TEMPERATURE (KELVIN) : 110.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.039 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14672 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 28.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 27.150 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 16.40 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.1500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.40 REMARK 200 R MERGE FOR SHELL (I) : 0.36000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1UN8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.01 M MAGNESIUM SULPHATE 0.05 M REMARK 280 SODIUM CACODYLATE PH 6.0 1.8 M LITHIUM SULPHATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 69.51500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.51500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 69.51500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.51500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 69.51500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 69.51500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 69.51500 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 69.51500 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 69.51500 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 69.51500 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 69.51500 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 69.51500 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 69.51500 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 69.51500 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 69.51500 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 69.51500 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 69.51500 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 69.51500 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 104.27250 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 34.75750 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 34.75750 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 104.27250 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 104.27250 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 104.27250 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 34.75750 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 34.75750 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 104.27250 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 34.75750 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 104.27250 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 34.75750 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 104.27250 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 34.75750 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 34.75750 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 34.75750 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 104.27250 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 34.75750 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 104.27250 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 104.27250 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 104.27250 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 34.75750 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 34.75750 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 104.27250 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 104.27250 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 34.75750 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 34.75750 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 34.75750 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 34.75750 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 104.27250 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 34.75750 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 104.27250 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 34.75750 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 104.27250 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 104.27250 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 104.27250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N7 ADP A 1211 O HOH A 2038 1.58 REMARK 500 C5 ADP A 1211 O HOH A 2038 2.08 REMARK 500 N6 ADP A 1211 O HOH A 2038 2.09 REMARK 500 O HOH A 2020 O HOH A 2021 2.11 REMARK 500 NH1 ARG A 111 O HOH A 2021 2.15 REMARK 500 OD2 ASP A 191 O2' ADP A 1211 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 37 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP A 60 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 132 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 94 -26.71 114.30 REMARK 500 THR A 95 76.93 -110.01 REMARK 500 GLN A 96 97.94 -38.85 REMARK 500 ALA A 97 44.14 19.42 REMARK 500 GLN A 99 -27.16 -149.68 REMARK 500 LYS A 128 52.41 80.48 REMARK 500 ASN A 148 50.64 38.16 REMARK 500 ALA A 207 -33.64 -37.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1212 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 30 OD1 REMARK 620 2 ASP A 30 OD2 47.8 REMARK 620 3 ASP A 35 OD2 112.4 87.0 REMARK 620 4 ASP A 37 OD1 128.8 86.1 79.9 REMARK 620 5 ADP A1211 O1B 148.3 163.9 84.2 79.1 REMARK 620 6 ADP A1211 O1A 79.4 98.4 167.2 88.8 87.7 REMARK 620 7 ADP A1211 O3B 97.0 144.8 113.0 124.6 51.3 68.6 REMARK 620 8 HOH A2008 O 55.8 97.8 97.7 175.4 96.7 93.1 52.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1213 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 35 OD1 REMARK 620 2 ASP A 37 OD2 75.9 REMARK 620 3 ADP A1211 O2B 105.7 132.1 REMARK 620 4 ADP A1211 O1B 71.7 80.3 56.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A1211 DBREF 2BTD A 1 210 UNP P76014 DHAL_ECOLI 1 210 SEQRES 1 A 210 MET SER LEU SER ARG THR GLN ILE VAL ASN TRP LEU THR SEQRES 2 A 210 ARG CYS GLY ASP ILE PHE SER THR GLU SER GLU TYR LEU SEQRES 3 A 210 THR GLY LEU ASP ARG GLU ILE GLY ASP ALA ASP HIS GLY SEQRES 4 A 210 LEU ASN MET ASN ARG GLY PHE SER LYS VAL VAL GLU LYS SEQRES 5 A 210 LEU PRO ALA ILE ALA ASP LYS ASP ILE GLY PHE ILE LEU SEQRES 6 A 210 LYS ASN THR GLY MET THR LEU LEU SER SER VAL GLY GLY SEQRES 7 A 210 ALA SER GLY PRO LEU PHE GLY THR PHE PHE ILE ARG ALA SEQRES 8 A 210 ALA GLN ALA THR GLN ALA ARG GLN SER LEU THR LEU GLU SEQRES 9 A 210 GLU LEU TYR GLN MET PHE ARG ASP GLY ALA ASP GLY VAL SEQRES 10 A 210 ILE SER ARG GLY LYS ALA GLU PRO GLY ASP LYS THR MET SEQRES 11 A 210 CYS ASP VAL TRP VAL PRO VAL VAL GLU SER LEU ARG GLN SEQRES 12 A 210 SER SER GLU GLN ASN LEU SER VAL PRO VAL ALA LEU GLU SEQRES 13 A 210 ALA ALA SER SER ILE ALA GLU SER ALA ALA GLN SER THR SEQRES 14 A 210 ILE THR MET GLN ALA ARG LYS GLY ARG ALA SER TYR LEU SEQRES 15 A 210 GLY GLU ARG SER ILE GLY HIS GLN ASP PRO GLY ALA THR SEQRES 16 A 210 SER VAL MET PHE MET MET GLN MET LEU ALA LEU ALA ALA SEQRES 17 A 210 LYS GLU HET ADP A1211 27 HET MG A1212 1 HET MG A1213 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 MG 2(MG 2+) FORMUL 5 HOH *39(H2 O) HELIX 1 1 ARG A 5 GLU A 22 1 18 HELIX 2 2 GLU A 22 ILE A 33 1 12 HELIX 3 3 ASP A 37 LYS A 52 1 16 HELIX 4 4 LYS A 52 ALA A 57 1 6 HELIX 5 5 ASP A 60 VAL A 76 1 17 HELIX 6 6 ALA A 79 GLN A 93 1 15 HELIX 7 7 THR A 102 LYS A 122 1 21 HELIX 8 8 MET A 130 GLN A 147 1 18 HELIX 9 9 SER A 150 SER A 168 1 19 HELIX 10 10 GLY A 177 ILE A 187 5 11 HELIX 11 11 ASP A 191 ALA A 208 1 18 SHEET 1 AA 2 LEU A 3 SER A 4 0 SHEET 2 AA 2 SER A 100 LEU A 101 -1 O LEU A 101 N LEU A 3 LINK OD1 ASP A 30 MG MG A1212 1555 1555 2.96 LINK OD2 ASP A 30 MG MG A1212 1555 1555 2.16 LINK OD2 ASP A 35 MG MG A1212 1555 1555 2.17 LINK OD1 ASP A 35 MG MG A1213 1555 1555 2.62 LINK OD1 ASP A 37 MG MG A1212 1555 1555 2.18 LINK OD2 ASP A 37 MG MG A1213 1555 1555 2.20 LINK O1B ADP A1211 MG MG A1212 1555 1555 2.16 LINK O1A ADP A1211 MG MG A1212 1555 1555 2.16 LINK O3B ADP A1211 MG MG A1212 1555 1555 3.14 LINK O2B ADP A1211 MG MG A1213 1555 1555 3.00 LINK O1B ADP A1211 MG MG A1213 1555 1555 2.19 LINK MG MG A1212 O HOH A2008 1555 1555 2.06 SITE 1 AC1 5 ASP A 30 ASP A 35 ASP A 37 ADP A1211 SITE 2 AC1 5 HOH A2008 SITE 1 AC2 3 ASP A 35 ASP A 37 ADP A1211 SITE 1 AC3 23 ASP A 30 ASP A 35 ASP A 37 HIS A 38 SITE 2 AC3 23 ASN A 41 GLY A 78 ALA A 79 SER A 80 SITE 3 AC3 23 LEU A 83 GLY A 121 THR A 129 MET A 130 SITE 4 AC3 23 GLY A 177 ARG A 178 ASP A 191 PRO A 192 SITE 5 AC3 23 GLY A 193 ALA A 194 MG A1212 MG A1213 SITE 6 AC3 23 HOH A2008 HOH A2038 HOH A2039 CRYST1 139.030 139.030 139.030 90.00 90.00 90.00 P 41 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007193 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007193 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007193 0.00000