HEADER LECTIN 22-JUN-05 2BV4 TITLE 1.0A STRUCTURE OF CHROMOBACTERIUM VIOLACEUM LECTIN IN COMPLEX WITH TITLE 2 ALPHA-METHYL-MANNOSIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LECTIN CV-IIL; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHROMOBACTERIUM VIOLACEUM; SOURCE 3 ORGANISM_TAXID: 536; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: TUNER(DE3); SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET25(B) KEYWDS LECTIN, MANNOSE, CHROMOBACTERIUM VIOLACEUM EXPDTA X-RAY DIFFRACTION AUTHOR M.POKORNA,G.CIOCI,S.PERRET,E.REBUFFET,J.ADAM,N.GILBOA-GARBER, AUTHOR 2 E.P.MITCHELL,A.IMBERTY,M.WIMMEROVA REVDAT 6 13-DEC-23 2BV4 1 HETSYN REVDAT 5 29-JUL-20 2BV4 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE REVDAT 4 24-FEB-09 2BV4 1 VERSN REVDAT 3 21-JUN-06 2BV4 1 JRNL REVDAT 2 31-MAY-06 2BV4 1 AUTHOR JRNL REVDAT 1 25-MAY-06 2BV4 0 JRNL AUTH M.POKORNA,G.CIOCI,S.PERRET,E.REBUFFET,N.KOSTLANOVA,J.ADAM, JRNL AUTH 2 N.GILBOA-GARBER,E.P.MITCHELL,A.IMBERTY,M.WIMMEROVA JRNL TITL UNUSUAL ENTROPY DRIVEN AFFINITY OF CHROMOBACTERIUM VIOLACEUM JRNL TITL 2 LECTIN CV-IIL TOWARDS FUCOSE AND MANNOSE JRNL REF BIOCHEMISTRY V. 45 7501 2006 JRNL REFN ISSN 0006-2960 JRNL PMID 16768446 JRNL DOI 10.1021/BI060214E REMARK 2 REMARK 2 RESOLUTION. 1.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 108432 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.107 REMARK 3 R VALUE (WORKING SET) : 0.107 REMARK 3 FREE R VALUE : 0.123 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5724 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7463 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 400 REMARK 3 BIN FREE R VALUE : 0.2610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1668 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 7.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.59000 REMARK 3 B22 (A**2) : -0.43000 REMARK 3 B33 (A**2) : -0.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.017 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.018 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.011 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.464 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.985 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.979 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1942 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1775 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2685 ; 1.745 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4145 ; 2.094 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 276 ; 6.991 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 79 ;42.912 ;25.949 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 313 ;12.514 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;16.651 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 328 ; 0.351 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2319 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 368 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 338 ; 0.261 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1758 ; 0.207 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1000 ; 0.169 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1184 ; 0.102 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 249 ; 0.240 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 16 ; 0.053 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 17 ; 0.254 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 64 ; 0.262 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 44 ; 0.236 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1295 ; 1.557 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 526 ; 0.621 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2085 ; 2.107 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 705 ; 2.773 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 600 ; 3.896 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2BV4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JUN-05. REMARK 100 THE DEPOSITION ID IS D_1290023197. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : DIAMOND AND GE DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 114226 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.000 REMARK 200 RESOLUTION RANGE LOW (A) : 23.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.020 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.4800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.04 REMARK 200 R MERGE FOR SHELL (I) : 0.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.670 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: ACORN REMARK 200 STARTING MODEL: PDB ENTRY 1GZT REMARK 200 REMARK 200 REMARK: MOLREP WAS USED WITH MODEL 1GZT TO FIND THE POSITION OF 4 REMARK 200 CA ATOMS IN THE A.U. PHASING WAS PERFORMED BY ACORN STARTING REMARK 200 FROM THE POSITION OF THESE CA ATOMS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000 10%, 0.1M NACL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 25.34250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.75200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.34250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.75200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 50.68500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2032 O HOH B 2067 1.83 REMARK 500 O HOH A 2044 O HOH B 2052 2.07 REMARK 500 O HOH A 2101 O HOH B 2056 2.14 REMARK 500 O HOH A 2075 O HOH A 2088 2.18 REMARK 500 SD MET B 99 O HOH B 2172 2.18 REMARK 500 CD LYS A 85 O HOH B 2178 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2002 O HOH B 2151 2655 1.91 REMARK 500 O HOH A 2056 O HOH B 2084 4455 2.08 REMARK 500 O HOH A 2056 O HOH B 2086 4455 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 22 CB SER A 22 OG 0.103 REMARK 500 SER B 22 CB SER B 22 OG 0.086 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER B 22 CA - CB - OG ANGL. DEV. = -19.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 85 -51.01 -151.53 REMARK 500 LYS A 85 -56.33 -147.61 REMARK 500 LYS B 85 -51.45 -152.43 REMARK 500 LYS B 85 -54.16 -146.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 300 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 21 O REMARK 620 2 ASP A 100 OD1 144.0 REMARK 620 3 ASP A 100 OD2 153.4 46.8 REMARK 620 4 ASN A 102 OD1 86.2 70.9 76.5 REMARK 620 5 ASP A 103 OD1 83.0 69.3 116.0 88.3 REMARK 620 6 MMA A 400 O2 75.8 130.6 115.5 158.4 101.0 REMARK 620 7 MMA A 400 O3 131.6 64.9 73.4 135.8 76.9 65.8 REMARK 620 8 GLY B 113 O 82.2 121.9 76.7 86.1 164.5 79.8 116.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 200 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 94 OE1 REMARK 620 2 GLU A 94 OE2 53.3 REMARK 620 3 ASP A 98 OD1 85.5 82.8 REMARK 620 4 ASP A 100 OD1 78.3 130.8 85.3 REMARK 620 5 ASP A 103 OD2 84.2 80.4 163.2 105.4 REMARK 620 6 ASP A 103 OD1 118.5 130.9 145.6 76.8 51.0 REMARK 620 7 MMA A 400 O3 148.9 144.3 75.7 75.7 119.1 71.6 REMARK 620 8 MMA A 400 O4 140.9 87.9 95.5 140.8 84.4 81.1 66.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 300 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 113 O REMARK 620 2 ASN B 21 O 82.9 REMARK 620 3 ASP B 100 OD2 76.4 154.5 REMARK 620 4 ASP B 100 OD1 120.7 144.4 46.2 REMARK 620 5 ASN B 102 OD1 85.5 87.1 76.8 70.3 REMARK 620 6 ASP B 103 OD1 165.3 83.7 114.9 68.9 88.0 REMARK 620 7 MMA B 400 O2 80.5 75.9 114.3 130.4 159.1 101.8 REMARK 620 8 MMA B 400 O3 117.2 130.7 73.0 65.3 135.6 76.3 65.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 200 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 94 OE1 REMARK 620 2 GLU B 94 OE2 53.7 REMARK 620 3 ASP B 98 OD1 85.4 81.6 REMARK 620 4 ASP B 100 OD1 77.0 129.8 86.0 REMARK 620 5 ASP B 103 OD1 117.6 131.3 146.5 76.9 REMARK 620 6 ASP B 103 OD2 84.5 80.1 161.6 106.6 51.5 REMARK 620 7 MMA B 400 O3 148.9 144.2 76.5 76.6 71.7 118.9 REMARK 620 8 MMA B 400 O4 141.0 87.7 95.6 142.0 81.5 82.8 67.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMIMATION METHOD: PROVIDED BY DEPOSITOR REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BOI RELATED DB: PDB REMARK 900 1.1A STRUCTURE OF CHROMOBACTERIUM VIOLACEUM LECTIN CV2L IN COMPLEX REMARK 900 WITH ALPHA-METHYL- FUCOSIDE DBREF 2BV4 A 1 113 UNP Q7NX84 Q7NX84_CHRVO 2 114 DBREF 2BV4 B 1 113 UNP Q7NX84 Q7NX84_CHRVO 2 114 SEQRES 1 A 113 ALA GLN GLN GLY VAL PHE THR LEU PRO ALA ARG ILE ASN SEQRES 2 A 113 PHE GLY VAL THR VAL LEU VAL ASN SER ALA ALA THR GLN SEQRES 3 A 113 HIS VAL GLU ILE PHE VAL ASP ASN GLU PRO ARG ALA ALA SEQRES 4 A 113 PHE SER GLY VAL GLY THR GLY ASP ASN ASN LEU GLY THR SEQRES 5 A 113 LYS VAL ILE ASN SER GLY SER GLY ASN VAL ARG VAL GLN SEQRES 6 A 113 ILE THR ALA ASN GLY ARG GLN SER ASP LEU VAL SER SER SEQRES 7 A 113 GLN LEU VAL LEU ALA ASN LYS LEU ASN LEU ALA VAL VAL SEQRES 8 A 113 GLY SER GLU ASP GLY THR ASP MET ASP TYR ASN ASP SER SEQRES 9 A 113 ILE VAL ILE LEU ASN TRP PRO LEU GLY SEQRES 1 B 113 ALA GLN GLN GLY VAL PHE THR LEU PRO ALA ARG ILE ASN SEQRES 2 B 113 PHE GLY VAL THR VAL LEU VAL ASN SER ALA ALA THR GLN SEQRES 3 B 113 HIS VAL GLU ILE PHE VAL ASP ASN GLU PRO ARG ALA ALA SEQRES 4 B 113 PHE SER GLY VAL GLY THR GLY ASP ASN ASN LEU GLY THR SEQRES 5 B 113 LYS VAL ILE ASN SER GLY SER GLY ASN VAL ARG VAL GLN SEQRES 6 B 113 ILE THR ALA ASN GLY ARG GLN SER ASP LEU VAL SER SER SEQRES 7 B 113 GLN LEU VAL LEU ALA ASN LYS LEU ASN LEU ALA VAL VAL SEQRES 8 B 113 GLY SER GLU ASP GLY THR ASP MET ASP TYR ASN ASP SER SEQRES 9 B 113 ILE VAL ILE LEU ASN TRP PRO LEU GLY HET CA A 200 1 HET CA A 300 1 HET MMA A 400 14 HET CA B 200 1 HET CA B 300 1 HET MMA B 400 14 HETNAM CA CALCIUM ION HETNAM MMA METHYL ALPHA-D-MANNOPYRANOSIDE HETSYN MMA O1-METHYL-MANNOSE; METHYL ALPHA-D-MANNOSIDE; METHYL D- HETSYN 2 MMA MANNOSIDE; METHYL MANNOSIDE FORMUL 3 CA 4(CA 2+) FORMUL 5 MMA 2(C7 H14 O6) FORMUL 9 HOH *380(H2 O) SHEET 1 AA 4 VAL A 5 THR A 7 0 SHEET 2 AA 4 ASN A 61 ALA A 68 -1 O VAL A 62 N PHE A 6 SHEET 3 AA 4 GLN A 26 VAL A 32 -1 O HIS A 27 N THR A 67 SHEET 4 AA 4 GLU A 35 GLY A 42 -1 O ALA A 38 N ILE A 30 SHEET 1 AB 5 PRO A 36 ILE A 55 0 SHEET 2 AB 5 PHE A 14 ASN A 21 -1 O VAL A 16 N LYS A 53 SHEET 3 AB 5 SER A 104 TRP A 110 -1 O ILE A 107 N THR A 17 SHEET 4 AB 5 LEU A 86 SER A 93 -1 O VAL A 91 N VAL A 106 SHEET 5 AB 5 ASP A 74 LEU A 82 -1 O SER A 78 N VAL A 90 SHEET 1 BA 4 VAL B 5 THR B 7 0 SHEET 2 BA 4 ASN B 61 ALA B 68 -1 O VAL B 62 N PHE B 6 SHEET 3 BA 4 GLN B 26 VAL B 32 -1 O HIS B 27 N THR B 67 SHEET 4 BA 4 GLU B 35 GLY B 42 -1 O ALA B 38 N ILE B 30 SHEET 1 BB 5 PRO B 36 ILE B 55 0 SHEET 2 BB 5 PHE B 14 ASN B 21 -1 O VAL B 16 N LYS B 53 SHEET 3 BB 5 SER B 104 TRP B 110 -1 O ILE B 107 N THR B 17 SHEET 4 BB 5 LEU B 86 SER B 93 -1 O VAL B 91 N VAL B 106 SHEET 5 BB 5 ASP B 74 LEU B 82 -1 O SER B 78 N VAL B 90 LINK O ASN A 21 CA CA A 300 1555 1555 2.35 LINK OE1 GLU A 94 CA CA A 200 1555 1555 2.46 LINK OE2 GLU A 94 CA CA A 200 1555 1555 2.42 LINK OD1 ASP A 98 CA CA A 200 1555 1555 2.36 LINK OD1 ASP A 100 CA CA A 200 1555 1555 2.34 LINK OD1 ASP A 100 CA CA A 300 1555 1555 3.00 LINK OD2 ASP A 100 CA CA A 300 1555 1555 2.42 LINK OD1 ASN A 102 CA CA A 300 1555 1555 2.35 LINK OD2 ASP A 103 CA CA A 200 1555 1555 2.42 LINK OD1 ASP A 103 CA CA A 200 1555 1555 2.63 LINK OD1 ASP A 103 CA CA A 300 1555 1555 2.36 LINK O GLY A 113 CA CA B 300 1555 1555 2.40 LINK CA CA A 200 O3 MMA A 400 1555 1555 2.49 LINK CA CA A 200 O4 MMA A 400 1555 1555 2.53 LINK CA CA A 300 O2 MMA A 400 1555 1555 2.54 LINK CA CA A 300 O3 MMA A 400 1555 1555 2.46 LINK CA CA A 300 O GLY B 113 1555 1555 2.40 LINK O ASN B 21 CA CA B 300 1555 1555 2.36 LINK OE1 GLU B 94 CA CA B 200 1555 1555 2.47 LINK OE2 GLU B 94 CA CA B 200 1555 1555 2.43 LINK OD1 ASP B 98 CA CA B 200 1555 1555 2.37 LINK OD1 ASP B 100 CA CA B 200 1555 1555 2.36 LINK OD2 ASP B 100 CA CA B 300 1555 1555 2.41 LINK OD1 ASP B 100 CA CA B 300 1555 1555 3.03 LINK OD1 ASN B 102 CA CA B 300 1555 1555 2.35 LINK OD1 ASP B 103 CA CA B 200 1555 1555 2.61 LINK OD2 ASP B 103 CA CA B 200 1555 1555 2.41 LINK OD1 ASP B 103 CA CA B 300 1555 1555 2.36 LINK CA CA B 200 O3 MMA B 400 1555 1555 2.49 LINK CA CA B 200 O4 MMA B 400 1555 1555 2.57 LINK CA CA B 300 O2 MMA B 400 1555 1555 2.52 LINK CA CA B 300 O3 MMA B 400 1555 1555 2.48 CISPEP 1 TRP A 110 PRO A 111 0 -11.52 CISPEP 2 TRP B 110 PRO B 111 0 -12.06 CRYST1 50.685 89.504 46.484 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019730 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011173 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021513 0.00000