HEADER OXIDASE 28-JUN-05 2BVF TITLE CRYSTAL STRUCTURE OF 6-HYDOXY-D-NICOTINE OXIDASE FROM TITLE 2 ARTHROBACTER NICOTINOVORANS. CRYSTAL FORM 3 (P1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: 6-HYDROXY-D-NICOTINE OXIDASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.5.3.6; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: FAD COVALENTLY BOUND TO H 72 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARTHROBACTER NICOTINOVORANS; SOURCE 3 ORGANISM_TAXID: 29320; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PKK223-3 KEYWDS AUTOFLAVINYLATION, ENANTIOMERIC SUBSTRATES, FLAVOENZYMES, NICOTINE KEYWDS 2 DEGRADATION, OXIDASE EXPDTA X-RAY DIFFRACTION AUTHOR J.W.A.KOETTER,G.E.SCHULZ REVDAT 4 13-JUL-11 2BVF 1 VERSN REVDAT 3 24-FEB-09 2BVF 1 VERSN REVDAT 2 20-DEC-06 2BVF 1 JRNL REVDAT 1 17-AUG-05 2BVF 0 JRNL AUTH J.W.A.KOETTER,G.E.SCHULZ JRNL TITL CRYSTAL STRUCTURE OF 6-HYDROXY-D-NICOTINE OXIDASE FROM JRNL TITL 2 ARTHROBACTER NICOTINOVORANS. JRNL REF J.MOL.BIOL. V. 352 418 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 16095622 JRNL DOI 10.1016/J.JMB.2005.07.041 REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 73.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 73871 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2286 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.92 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4922 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.2330 REMARK 3 BIN FREE R VALUE SET COUNT : 152 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6808 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 106 REMARK 3 SOLVENT ATOMS : 1090 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.74000 REMARK 3 B22 (A**2) : -1.23000 REMARK 3 B33 (A**2) : -0.33000 REMARK 3 B12 (A**2) : 0.84000 REMARK 3 B13 (A**2) : 1.87000 REMARK 3 B23 (A**2) : 1.18000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.144 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.134 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.104 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.496 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7059 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9606 ; 1.384 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 904 ; 5.814 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 306 ;35.675 ;23.725 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1094 ;14.803 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 56 ;12.582 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1072 ; 0.224 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5422 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3884 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4912 ; 0.305 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 994 ; 0.150 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 78 ; 0.201 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 41 ; 0.140 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4579 ; 0.684 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7140 ; 1.119 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2825 ; 1.781 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2466 ; 2.801 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 205 REMARK 3 RESIDUE RANGE : A 412 A 457 REMARK 3 ORIGIN FOR THE GROUP (A): 42.9440 50.6120 54.2140 REMARK 3 T TENSOR REMARK 3 T11: -0.0665 T22: -0.0589 REMARK 3 T33: -0.0839 T12: -0.0024 REMARK 3 T13: -0.0101 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 1.7227 L22: 1.3899 REMARK 3 L33: 1.6689 L12: 0.2298 REMARK 3 L13: -1.0131 L23: -0.5370 REMARK 3 S TENSOR REMARK 3 S11: 0.0220 S12: -0.0933 S13: -0.0051 REMARK 3 S21: 0.0371 S22: -0.0434 S23: 0.0092 REMARK 3 S31: 0.0190 S32: 0.1998 S33: 0.0214 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 206 A 411 REMARK 3 ORIGIN FOR THE GROUP (A): 20.3440 38.9870 63.8030 REMARK 3 T TENSOR REMARK 3 T11: -0.0831 T22: -0.1336 REMARK 3 T33: 0.0342 T12: 0.0199 REMARK 3 T13: 0.0353 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 1.3338 L22: 1.3612 REMARK 3 L33: 0.9759 L12: 0.4828 REMARK 3 L13: -0.4923 L23: -0.4920 REMARK 3 S TENSOR REMARK 3 S11: -0.0646 S12: 0.0050 S13: -0.0658 REMARK 3 S21: -0.0112 S22: 0.1283 S23: 0.2308 REMARK 3 S31: 0.0444 S32: 0.0108 S33: -0.0637 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 205 REMARK 3 RESIDUE RANGE : B 412 B 457 REMARK 3 ORIGIN FOR THE GROUP (A): 63.7200 66.9710 22.8270 REMARK 3 T TENSOR REMARK 3 T11: -0.0706 T22: -0.0161 REMARK 3 T33: -0.0795 T12: -0.0227 REMARK 3 T13: -0.0527 T23: -0.0359 REMARK 3 L TENSOR REMARK 3 L11: 1.0771 L22: 1.2775 REMARK 3 L33: 2.1123 L12: -0.0513 REMARK 3 L13: -0.8425 L23: -0.4310 REMARK 3 S TENSOR REMARK 3 S11: -0.0357 S12: -0.2051 S13: 0.0611 REMARK 3 S21: 0.1157 S22: 0.0420 S23: -0.0315 REMARK 3 S31: -0.0314 S32: 0.1855 S33: -0.0062 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 206 B 411 REMARK 3 ORIGIN FOR THE GROUP (A): 64.2270 74.5920 -3.2770 REMARK 3 T TENSOR REMARK 3 T11: -0.0419 T22: -0.0859 REMARK 3 T33: -0.0670 T12: -0.0273 REMARK 3 T13: -0.0547 T23: -0.0191 REMARK 3 L TENSOR REMARK 3 L11: 1.2621 L22: 1.3162 REMARK 3 L33: 2.1735 L12: 0.0443 REMARK 3 L13: -0.6203 L23: -0.9914 REMARK 3 S TENSOR REMARK 3 S11: -0.0349 S12: 0.1154 S13: 0.2008 REMARK 3 S21: -0.1965 S22: 0.1075 S23: 0.0001 REMARK 3 S31: 0.0256 S32: -0.1475 S33: -0.0725 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 2BVF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-JUN-05. REMARK 100 THE PDBE ID CODE IS EBI-23785. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8430 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76158 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 70.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 4.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.1900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.36000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.6 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.7 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, CYS 433 TO SER REMARK 400 ENGINEERED RESIDUE IN CHAIN B, CYS 433 TO SER REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 GLY A 458 REMARK 465 SER A 459 REMARK 465 MET B 1 REMARK 465 VAL B 2 REMARK 465 SER B 3 REMARK 465 SER B 4 REMARK 465 GLY B 458 REMARK 465 SER B 459 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2179 O HOH A 2201 2.18 REMARK 500 O HOH A 2186 O HOH A 2202 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 69 -91.81 -116.13 REMARK 500 ARG A 317 -169.70 -123.22 REMARK 500 PRO A 341 -75.86 -50.58 REMARK 500 LYS A 428 151.94 87.38 REMARK 500 ASN A 451 -174.06 -176.34 REMARK 500 SER B 69 -83.31 -122.60 REMARK 500 ARG B 317 -163.90 -127.28 REMARK 500 LYS B 428 149.52 87.79 REMARK 500 ASN B 451 -171.78 -172.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 700 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BVG RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF 6-HYDOXY-D-NICOTINE REMARK 900 OXIDASE FROM ARTHROBACTER NICOTINOVORANS. REMARK 900 CRYSTAL FORM 1 (P21) REMARK 900 RELATED ID: 2BVH RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF 6-HYDOXY-D-NICOTINE REMARK 900 OXIDASE FROM ARTHROBACTER NICOTINOVORANS. REMARK 900 CRYSTAL FORM 2 (P21) REMARK 999 REMARK 999 SEQUENCE REMARK 999 MUTATION C433S DBREF 2BVF A 1 459 UNP Q8GAG1 Q8GAG1_ARTNI 1 459 DBREF 2BVF B 1 459 UNP Q8GAG1 Q8GAG1_ARTNI 1 459 SEQADV 2BVF SER A 433 UNP Q8GAG1 CYS 433 ENGINEERED MUTATION SEQADV 2BVF SER B 433 UNP Q8GAG1 CYS 433 ENGINEERED MUTATION SEQRES 1 A 459 MET VAL SER SER LYS LEU ALA THR PRO LEU SER ILE GLN SEQRES 2 A 459 GLY GLU VAL ILE TYR PRO ASP ASP SER GLY PHE ASP ALA SEQRES 3 A 459 ILE ALA ASN ILE TRP ASP GLY ARG HIS LEU GLN ARG PRO SEQRES 4 A 459 SER LEU ILE ALA ARG CYS LEU SER ALA GLY ASP VAL ALA SEQRES 5 A 459 LYS SER VAL ARG TYR ALA CYS ASP ASN GLY LEU GLU ILE SEQRES 6 A 459 SER VAL ARG SER GLY GLY HIS ASN PRO ASN GLY TYR ALA SEQRES 7 A 459 THR ASN ASP GLY GLY ILE VAL LEU ASP LEU ARG LEU MET SEQRES 8 A 459 ASN SER ILE HIS ILE ASP THR ALA GLY SER ARG ALA ARG SEQRES 9 A 459 ILE GLY GLY GLY VAL ILE SER GLY ASP LEU VAL LYS GLU SEQRES 10 A 459 ALA ALA LYS PHE GLY LEU ALA ALA VAL THR GLY MET HIS SEQRES 11 A 459 PRO LYS VAL GLY PHE CYS GLY LEU ALA LEU ASN GLY GLY SEQRES 12 A 459 VAL GLY PHE LEU THR PRO LYS TYR GLY LEU ALA SER ASP SEQRES 13 A 459 ASN ILE LEU GLY ALA THR LEU VAL THR ALA THR GLY ASP SEQRES 14 A 459 VAL ILE TYR CYS SER ASP ASP GLU ARG PRO GLU LEU PHE SEQRES 15 A 459 TRP ALA VAL ARG GLY ALA GLY PRO ASN PHE GLY VAL VAL SEQRES 16 A 459 THR GLU VAL GLU VAL GLN LEU TYR GLU LEU PRO ARG LYS SEQRES 17 A 459 MET LEU ALA GLY PHE ILE THR TRP ALA PRO SER VAL SER SEQRES 18 A 459 GLU LEU ALA GLY LEU LEU THR SER LEU LEU ASP ALA LEU SEQRES 19 A 459 ASN GLU MET ALA ASP HIS ILE TYR PRO SER VAL PHE VAL SEQRES 20 A 459 GLY VAL ASP GLU ASN ARG ALA PRO SER VAL THR VAL CYS SEQRES 21 A 459 VAL GLY HIS LEU GLY GLY LEU ASP ILE ALA GLU ARG ASP SEQRES 22 A 459 ILE ALA ARG LEU ARG GLY LEU GLY ARG THR VAL SER ASP SEQRES 23 A 459 SER ILE ALA VAL ARG SER TYR ASP GLU VAL VAL ALA LEU SEQRES 24 A 459 ASN ALA GLU VAL GLY SER PHE GLU ASP GLY MET SER ASN SEQRES 25 A 459 LEU TRP ILE ASP ARG GLU ILE ALA MET PRO ASN ALA ARG SEQRES 26 A 459 PHE ALA GLU ALA ILE ALA GLY ASN LEU ASP LYS PHE VAL SEQRES 27 A 459 SER GLU PRO ALA SER GLY GLY SER VAL LYS LEU GLU ILE SEQRES 28 A 459 GLU GLY MET PRO PHE GLY ASN PRO LYS ARG THR PRO ALA SEQRES 29 A 459 ARG HIS ARG ASP ALA MET GLY VAL LEU ALA LEU ALA GLU SEQRES 30 A 459 TRP SER GLY ALA ALA PRO GLY SER GLU LYS TYR PRO GLU SEQRES 31 A 459 LEU ALA ARG GLU LEU ASP ALA ALA LEU LEU ARG ALA GLY SEQRES 32 A 459 VAL THR THR SER GLY PHE GLY LEU LEU ASN ASN ASN SER SEQRES 33 A 459 GLU VAL THR ALA GLU MET VAL ALA GLU VAL TYR LYS PRO SEQRES 34 A 459 GLU VAL TYR SER ARG LEU ALA ALA VAL LYS ARG GLU TYR SEQRES 35 A 459 ASP PRO GLU ASN ARG PHE ARG HIS ASN TYR ASN ILE ASP SEQRES 36 A 459 PRO GLU GLY SER SEQRES 1 B 459 MET VAL SER SER LYS LEU ALA THR PRO LEU SER ILE GLN SEQRES 2 B 459 GLY GLU VAL ILE TYR PRO ASP ASP SER GLY PHE ASP ALA SEQRES 3 B 459 ILE ALA ASN ILE TRP ASP GLY ARG HIS LEU GLN ARG PRO SEQRES 4 B 459 SER LEU ILE ALA ARG CYS LEU SER ALA GLY ASP VAL ALA SEQRES 5 B 459 LYS SER VAL ARG TYR ALA CYS ASP ASN GLY LEU GLU ILE SEQRES 6 B 459 SER VAL ARG SER GLY GLY HIS ASN PRO ASN GLY TYR ALA SEQRES 7 B 459 THR ASN ASP GLY GLY ILE VAL LEU ASP LEU ARG LEU MET SEQRES 8 B 459 ASN SER ILE HIS ILE ASP THR ALA GLY SER ARG ALA ARG SEQRES 9 B 459 ILE GLY GLY GLY VAL ILE SER GLY ASP LEU VAL LYS GLU SEQRES 10 B 459 ALA ALA LYS PHE GLY LEU ALA ALA VAL THR GLY MET HIS SEQRES 11 B 459 PRO LYS VAL GLY PHE CYS GLY LEU ALA LEU ASN GLY GLY SEQRES 12 B 459 VAL GLY PHE LEU THR PRO LYS TYR GLY LEU ALA SER ASP SEQRES 13 B 459 ASN ILE LEU GLY ALA THR LEU VAL THR ALA THR GLY ASP SEQRES 14 B 459 VAL ILE TYR CYS SER ASP ASP GLU ARG PRO GLU LEU PHE SEQRES 15 B 459 TRP ALA VAL ARG GLY ALA GLY PRO ASN PHE GLY VAL VAL SEQRES 16 B 459 THR GLU VAL GLU VAL GLN LEU TYR GLU LEU PRO ARG LYS SEQRES 17 B 459 MET LEU ALA GLY PHE ILE THR TRP ALA PRO SER VAL SER SEQRES 18 B 459 GLU LEU ALA GLY LEU LEU THR SER LEU LEU ASP ALA LEU SEQRES 19 B 459 ASN GLU MET ALA ASP HIS ILE TYR PRO SER VAL PHE VAL SEQRES 20 B 459 GLY VAL ASP GLU ASN ARG ALA PRO SER VAL THR VAL CYS SEQRES 21 B 459 VAL GLY HIS LEU GLY GLY LEU ASP ILE ALA GLU ARG ASP SEQRES 22 B 459 ILE ALA ARG LEU ARG GLY LEU GLY ARG THR VAL SER ASP SEQRES 23 B 459 SER ILE ALA VAL ARG SER TYR ASP GLU VAL VAL ALA LEU SEQRES 24 B 459 ASN ALA GLU VAL GLY SER PHE GLU ASP GLY MET SER ASN SEQRES 25 B 459 LEU TRP ILE ASP ARG GLU ILE ALA MET PRO ASN ALA ARG SEQRES 26 B 459 PHE ALA GLU ALA ILE ALA GLY ASN LEU ASP LYS PHE VAL SEQRES 27 B 459 SER GLU PRO ALA SER GLY GLY SER VAL LYS LEU GLU ILE SEQRES 28 B 459 GLU GLY MET PRO PHE GLY ASN PRO LYS ARG THR PRO ALA SEQRES 29 B 459 ARG HIS ARG ASP ALA MET GLY VAL LEU ALA LEU ALA GLU SEQRES 30 B 459 TRP SER GLY ALA ALA PRO GLY SER GLU LYS TYR PRO GLU SEQRES 31 B 459 LEU ALA ARG GLU LEU ASP ALA ALA LEU LEU ARG ALA GLY SEQRES 32 B 459 VAL THR THR SER GLY PHE GLY LEU LEU ASN ASN ASN SER SEQRES 33 B 459 GLU VAL THR ALA GLU MET VAL ALA GLU VAL TYR LYS PRO SEQRES 34 B 459 GLU VAL TYR SER ARG LEU ALA ALA VAL LYS ARG GLU TYR SEQRES 35 B 459 ASP PRO GLU ASN ARG PHE ARG HIS ASN TYR ASN ILE ASP SEQRES 36 B 459 PRO GLU GLY SER HET FAD A 600 53 HET FAD B 700 53 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 5 HOH *1090(H2 O) HELIX 1 1 GLY A 23 ASN A 29 1 7 HELIX 2 2 SER A 47 GLY A 62 1 16 HELIX 3 3 ILE A 110 LYS A 120 1 11 HELIX 4 4 GLY A 134 LEU A 140 1 7 HELIX 5 5 LEU A 147 GLY A 152 1 6 HELIX 6 6 LEU A 153 ASP A 156 5 4 HELIX 7 7 ARG A 178 GLY A 189 1 12 HELIX 8 8 PRO A 190 PHE A 192 5 3 HELIX 9 9 SER A 219 MET A 237 1 19 HELIX 10 10 GLY A 266 GLY A 279 1 14 HELIX 11 11 SER A 292 GLY A 304 1 13 HELIX 12 12 PRO A 322 GLY A 332 1 11 HELIX 13 13 ASN A 333 PHE A 337 5 5 HELIX 14 14 GLU A 386 ALA A 402 1 17 HELIX 15 15 LEU A 411 ASN A 415 5 5 HELIX 16 16 THR A 419 LYS A 428 1 10 HELIX 17 17 LYS A 428 ASP A 443 1 16 HELIX 18 18 GLY B 23 ASN B 29 1 7 HELIX 19 19 SER B 47 GLY B 62 1 16 HELIX 20 20 ILE B 110 LYS B 120 1 11 HELIX 21 21 GLY B 134 LEU B 140 1 7 HELIX 22 22 LEU B 147 GLY B 152 1 6 HELIX 23 23 LEU B 153 ASP B 156 5 4 HELIX 24 24 ARG B 178 GLY B 189 1 12 HELIX 25 25 PRO B 190 GLY B 193 5 4 HELIX 26 26 SER B 219 MET B 237 1 19 HELIX 27 27 GLY B 266 GLY B 279 1 14 HELIX 28 28 SER B 292 LEU B 299 1 8 HELIX 29 29 PRO B 322 GLY B 332 1 11 HELIX 30 30 ASN B 333 PHE B 337 5 5 HELIX 31 31 GLU B 386 ALA B 402 1 17 HELIX 32 32 LEU B 411 ASN B 415 5 5 HELIX 33 33 THR B 419 LYS B 428 1 10 HELIX 34 34 LYS B 428 ASP B 443 1 16 SHEET 1 AA 4 GLU A 15 ILE A 17 0 SHEET 2 AA 4 LEU A 41 ARG A 44 -1 O ILE A 42 N ILE A 17 SHEET 3 AA 4 ILE A 84 ASP A 87 1 O VAL A 85 N ALA A 43 SHEET 4 AA 4 ILE A 65 ARG A 68 1 O SER A 66 N LEU A 86 SHEET 1 AB 5 ILE A 94 ASP A 97 0 SHEET 2 AB 5 ARG A 102 GLY A 106 -1 O ARG A 102 N ASP A 97 SHEET 3 AB 5 VAL A 194 GLN A 201 -1 O VAL A 198 N ILE A 105 SHEET 4 AB 5 ILE A 158 VAL A 164 -1 N LEU A 159 O GLU A 199 SHEET 5 AB 5 VAL A 170 SER A 174 -1 O ILE A 171 N LEU A 163 SHEET 1 AC 2 LEU A 123 ALA A 124 0 SHEET 2 AC 2 TYR A 203 GLU A 204 -1 O TYR A 203 N ALA A 124 SHEET 1 AD 3 SER A 285 ASP A 286 0 SHEET 2 AD 3 MET A 209 TRP A 216 -1 N THR A 215 O SER A 285 SHEET 3 AD 3 ALA A 289 ARG A 291 -1 O ALA A 289 N ALA A 211 SHEET 1 AE 5 SER A 285 ASP A 286 0 SHEET 2 AE 5 MET A 209 TRP A 216 -1 N THR A 215 O SER A 285 SHEET 3 AE 5 PRO A 255 GLY A 262 -1 O VAL A 257 N TRP A 216 SHEET 4 AE 5 SER A 244 VAL A 249 -1 O SER A 244 N CYS A 260 SHEET 5 AE 5 GLY A 345 GLU A 352 -1 O LEU A 349 N VAL A 247 SHEET 1 BA 4 GLU B 15 ILE B 17 0 SHEET 2 BA 4 LEU B 41 ARG B 44 -1 O ILE B 42 N ILE B 17 SHEET 3 BA 4 ILE B 84 ASP B 87 1 O VAL B 85 N ALA B 43 SHEET 4 BA 4 ILE B 65 ARG B 68 1 O SER B 66 N LEU B 86 SHEET 1 BB 5 ILE B 94 ASP B 97 0 SHEET 2 BB 5 ARG B 102 GLY B 106 -1 O ARG B 102 N ASP B 97 SHEET 3 BB 5 VAL B 194 GLN B 201 -1 O VAL B 198 N ILE B 105 SHEET 4 BB 5 ILE B 158 VAL B 164 -1 N LEU B 159 O GLU B 199 SHEET 5 BB 5 VAL B 170 SER B 174 -1 O ILE B 171 N LEU B 163 SHEET 1 BC 2 LEU B 123 ALA B 124 0 SHEET 2 BC 2 TYR B 203 GLU B 204 -1 O TYR B 203 N ALA B 124 SHEET 1 BD 3 THR B 283 ASP B 286 0 SHEET 2 BD 3 MET B 209 TRP B 216 -1 O THR B 215 N VAL B 284 SHEET 3 BD 3 ALA B 289 ARG B 291 -1 O ALA B 289 N ALA B 211 SHEET 1 BE 5 THR B 283 ASP B 286 0 SHEET 2 BE 5 MET B 209 TRP B 216 -1 O THR B 215 N VAL B 284 SHEET 3 BE 5 PRO B 255 GLY B 262 -1 O VAL B 257 N TRP B 216 SHEET 4 BE 5 SER B 244 VAL B 249 -1 O SER B 244 N CYS B 260 SHEET 5 BE 5 GLY B 345 GLU B 352 -1 O LEU B 349 N VAL B 247 SSBOND 1 CYS A 59 CYS B 59 1555 1555 2.05 LINK ND1 HIS A 72 C8M FAD A 600 1555 1555 1.50 LINK ND1 HIS B 72 C8M FAD B 700 1555 1555 1.51 SITE 1 AC1 36 TRP A 31 VAL A 67 ARG A 68 SER A 69 SITE 2 AC1 36 GLY A 70 GLY A 71 HIS A 72 ASN A 73 SITE 3 AC1 36 TYR A 77 ALA A 78 LEU A 88 GLY A 107 SITE 4 AC1 36 MET A 129 HIS A 130 VAL A 133 GLY A 134 SITE 5 AC1 36 CYS A 136 GLY A 137 LEU A 138 LEU A 140 SITE 6 AC1 36 ASN A 141 GLY A 143 VAL A 144 PRO A 190 SITE 7 AC1 36 GLY A 193 VAL A 195 ASN A 413 HIS A 450 SITE 8 AC1 36 ASN A 451 HOH A2118 HOH A2533 HOH A2540 SITE 9 AC1 36 HOH A2541 HOH A2542 HOH A2543 HOH A2544 SITE 1 AC2 36 TRP B 31 VAL B 67 ARG B 68 SER B 69 SITE 2 AC2 36 GLY B 70 GLY B 71 HIS B 72 ASN B 73 SITE 3 AC2 36 TYR B 77 ALA B 78 LEU B 88 GLY B 107 SITE 4 AC2 36 MET B 129 HIS B 130 VAL B 133 GLY B 134 SITE 5 AC2 36 CYS B 136 GLY B 137 LEU B 138 LEU B 140 SITE 6 AC2 36 ASN B 141 GLY B 143 VAL B 144 PRO B 190 SITE 7 AC2 36 GLY B 193 VAL B 195 ASN B 413 HIS B 450 SITE 8 AC2 36 ASN B 451 HOH B2481 HOH B2483 HOH B2542 SITE 9 AC2 36 HOH B2543 HOH B2544 HOH B2545 HOH B2546 CRYST1 60.527 62.398 73.351 89.56 85.29 73.03 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016522 -0.005041 -0.001449 0.00000 SCALE2 0.000000 0.016755 0.000288 0.00000 SCALE3 0.000000 0.000000 0.013681 0.00000