HEADER HYDROLASE 19-JUL-05 2BWT TITLE ASP260ALA ESCHERICHIA COLI AMINOPEPTIDASE P COMPND MOL_ID: 1; COMPND 2 MOLECULE: XAA-PRO AMINOPEPTIDASE P; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AMINOPEPTIDASE P, X-PRO AMINOPEPTIDASE, AMINOPEPTIDASE P II, COMPND 5 APP-II, AMINOACYLPROLINE AMINOPEPTIDASE; COMPND 6 EC: 3.4.11.9; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: AN1459; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: AN1459; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPL670/D260A KEYWDS AMINOPEPTIDASE P, METALLOENZYME, 'PITA-BREAD' ENZYME, PROLINE- KEYWDS 2 SPECIFIC ENZYME, MANGANESE ENZYME, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.C.GRAHAM,J.M.GUSS REVDAT 6 13-DEC-23 2BWT 1 LINK REVDAT 5 15-MAY-19 2BWT 1 REMARK REVDAT 4 08-MAY-19 2BWT 1 REMARK REVDAT 3 13-JUL-11 2BWT 1 VERSN REVDAT 2 24-FEB-09 2BWT 1 VERSN REVDAT 1 25-JAN-06 2BWT 0 JRNL AUTH S.C.GRAHAM,P.E.LILLEY,M.LEE,P.M.SCHAEFFER,A.V.KRALICEK, JRNL AUTH 2 N.E.DIXON,J.M.GUSS JRNL TITL KINETIC AND CRYSTALLOGRAPHIC ANALYSIS OF MUTANT ESCHERICHIA JRNL TITL 2 COLI AMINOPEPTIDASE P: INSIGHTS INTO SUBSTRATE RECOGNITION JRNL TITL 3 AND THE MECHANISM OF CATALYSIS. JRNL REF BIOCHEMISTRY V. 45 964 2006 JRNL REFN ISSN 0006-2960 JRNL PMID 16411772 JRNL DOI 10.1021/BI0518904 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.0 REMARK 3 NUMBER OF REFLECTIONS : 21640 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1091 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1604 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3220 REMARK 3 BIN FREE R VALUE SET COUNT : 90 REMARK 3 BIN FREE R VALUE : 0.3870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3484 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 41 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 76.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.98000 REMARK 3 B22 (A**2) : 2.98000 REMARK 3 B33 (A**2) : -5.96000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.358 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.250 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.169 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.214 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3604 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3281 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4892 ; 1.074 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7579 ; 0.720 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 441 ; 5.628 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 184 ;38.241 ;23.370 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 607 ;12.831 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;14.321 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 531 ; 0.060 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4052 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 759 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 736 ; 0.201 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3319 ; 0.163 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1728 ; 0.175 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2168 ; 0.078 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 88 ; 0.122 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.122 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 62 ; 0.215 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.136 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2365 ; 0.504 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3526 ; 0.811 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1541 ; 1.140 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1362 ; 1.907 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 172 REMARK 3 ORIGIN FOR THE GROUP (A): 20.0548 71.0632 69.6319 REMARK 3 T TENSOR REMARK 3 T11: -0.0878 T22: 0.0463 REMARK 3 T33: -0.0784 T12: -0.1202 REMARK 3 T13: -0.0144 T23: -0.0578 REMARK 3 L TENSOR REMARK 3 L11: 1.4232 L22: 4.2003 REMARK 3 L33: 1.7109 L12: -0.7191 REMARK 3 L13: -0.1380 L23: 0.5036 REMARK 3 S TENSOR REMARK 3 S11: 0.0180 S12: -0.3619 S13: -0.0419 REMARK 3 S21: 0.4924 S22: 0.0781 S23: -0.0157 REMARK 3 S31: 0.0092 S32: 0.1456 S33: -0.0961 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 173 A 440 REMARK 3 ORIGIN FOR THE GROUP (A): 35.9454 52.9438 41.2152 REMARK 3 T TENSOR REMARK 3 T11: -0.1412 T22: -0.0297 REMARK 3 T33: -0.0900 T12: -0.0577 REMARK 3 T13: 0.0163 T23: -0.0440 REMARK 3 L TENSOR REMARK 3 L11: 0.9837 L22: 1.9871 REMARK 3 L33: 1.5302 L12: -0.0929 REMARK 3 L13: -0.1292 L23: 0.7959 REMARK 3 S TENSOR REMARK 3 S11: 0.0558 S12: 0.0358 S13: 0.1732 REMARK 3 S21: -0.2567 S22: 0.0470 S23: -0.1743 REMARK 3 S31: -0.0023 S32: 0.2221 S33: -0.1028 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. INSUFFICIENT DENSITY WAS PRESENT FOR COMPLETE REMARK 3 MODELLING OF RESIDUES A439 AND A440. REMARK 4 REMARK 4 2BWT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-JUL-05. REMARK 100 THE DEPOSITION ID IS D_1290024952. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAY-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98086 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22735 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 24.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 6.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.53000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 2BHC REMARK 200 REMARK 200 REMARK: STARTING MODEL WAS STRIPPED OF HETATMS. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 77.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HANGING DROP VAPOUR DIFFUSION AT 4C. 2 REMARK 280 UL 10 MG/ML APPRO PLUS 2 UL RESERVOIR SOLUTION: 30% MPD, 0.1 M REMARK 280 CITRATE PH 7.5, 0.2 M MGACETATE. SOAKED IN RESERVOIR SOLUTION REMARK 280 SUPPLEMENTED WITH AND 1 MM MNCL2 FOR 1 HR AT 4C PRIOR TO REMARK 280 CRYOCOOLING., PH 7.50, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 68.79400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 68.79400 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 115.97400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 68.79400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.98700 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 68.79400 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 173.96100 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 68.79400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 173.96100 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 68.79400 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 57.98700 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 68.79400 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 68.79400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 115.97400 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 68.79400 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 68.79400 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 115.97400 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 68.79400 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 173.96100 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 68.79400 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 57.98700 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 68.79400 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 57.98700 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 68.79400 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 173.96100 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 68.79400 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 68.79400 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 115.97400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 68.79400 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 68.79400 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 115.97400 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 -68.79400 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 68.79400 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 115.97400 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 137.58800 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2005 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ASP 260 TO ALA REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 439 CG CD CE NZ REMARK 470 GLN A 440 C O CB CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 36 129.67 -170.65 REMARK 500 ALA A 37 -127.01 57.53 REMARK 500 ASN A 56 44.41 -101.54 REMARK 500 TRP A 88 -83.52 -88.11 REMARK 500 HIS A 243 68.02 -119.60 REMARK 500 HIS A 243 65.34 -117.73 REMARK 500 LYS A 425 -19.45 -141.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1441 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 271 OD2 REMARK 620 2 HIS A 354 NE2 90.2 REMARK 620 3 GLU A 383 OE2 145.8 81.3 REMARK 620 4 GLU A 406 OE2 75.7 113.8 77.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1442 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2022 O REMARK 620 2 HOH A2023 O 88.6 REMARK 620 3 HOH A2024 O 88.3 91.4 REMARK 620 4 HOH A2034 O 91.1 89.9 178.5 REMARK 620 5 HOH A2035 O 178.9 90.9 90.7 90.0 REMARK 620 6 HOH A2036 O 89.9 178.3 89.5 89.1 90.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A1441 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1442 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLC A1443 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A1444 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1A16 RELATED DB: PDB REMARK 900 AMINOPEPTIDASE P FROM E. COLI WITH THE INHIBITOR PRO-LEU REMARK 900 RELATED ID: 1AZ9 RELATED DB: PDB REMARK 900 AMINOPEPTIDASE P FROM E. COLI REMARK 900 RELATED ID: 1JAW RELATED DB: PDB REMARK 900 AMINOPEPTIDASE P FROM E. COLI LOW PH FORM REMARK 900 RELATED ID: 1M35 RELATED DB: PDB REMARK 900 AMINOPEPTIDASE P FROM ESCHERICHIA COLI REMARK 900 RELATED ID: 1N51 RELATED DB: PDB REMARK 900 AMINOPEPTIDASE P IN COMPLEX WITH THE INHIBITOR APSTATIN REMARK 900 RELATED ID: 1W2M RELATED DB: PDB REMARK 900 CA-SUBSTITUTED FORM OF E. COLI AMINOPEPTIDASE P REMARK 900 RELATED ID: 1W7V RELATED DB: PDB REMARK 900 ZNMG SUBSTRITUTED AMINOPEPTIDASE P FROM E. COLI REMARK 900 RELATED ID: 1WBQ RELATED DB: PDB REMARK 900 ZNMG SUBSTITUTED AMINOPEPTIDASE P FROM E. COLI REMARK 900 RELATED ID: 2BH3 RELATED DB: PDB REMARK 900 ZN SUBSTITUTED E. COLI AMINOPEPTIDASE P IN COMPLEX WITH PRODUCT REMARK 900 RELATED ID: 2BHA RELATED DB: PDB REMARK 900 E. COLI AMINOPEPTIDASE P IN COMPLEX WITH SUBSTRATE REMARK 900 RELATED ID: 2BHB RELATED DB: PDB REMARK 900 ZN SUBSTITUTED E. COLI AMINOPEPTIDASE P REMARK 900 RELATED ID: 2BHC RELATED DB: PDB REMARK 900 NA SUBSTITUTED E. COLI AMINOPEPTIDASE P REMARK 900 RELATED ID: 2BHD RELATED DB: PDB REMARK 900 MG SUBSTITUTED E. COLI AMINOPEPTIDASE P IN COMPLEX WITH A PRODUCT- REMARK 900 LIKE INHIBITOR REMARK 900 RELATED ID: 2BN7 RELATED DB: PDB REMARK 900 MN SUBSTITUTED E. COLI AMINOPEPTIDASE P IN COMPLEX WITH PRODUCT AND REMARK 900 ZN REMARK 900 RELATED ID: 2BWS RELATED DB: PDB REMARK 900 HIS243ALA E. COLI AMINOPEPTIDASE P REMARK 900 RELATED ID: 2BWU RELATED DB: PDB REMARK 900 ASP271ALA E. COLI AMINOPEPTIDASE P REMARK 900 RELATED ID: 2BWV RELATED DB: PDB REMARK 900 HIS361ALA E. COLI AMINOPEPTIDASE P REMARK 900 RELATED ID: 2BWW RELATED DB: PDB REMARK 900 HIS350ALA E. COLI AMINOPEPTIDASE P REMARK 900 RELATED ID: 2BWX RELATED DB: PDB REMARK 900 HIS354ALA E. COLI AMINOPEPTIDASE P REMARK 900 RELATED ID: 2BWY RELATED DB: PDB REMARK 900 GLU383ALA E. COLI AMINOPEPTIDASE P REMARK 900 RELATED ID: 1WL9 RELATED DB: PDB REMARK 900 NATIVE (DI-MANAGANESE) AMINOPEPTIDASE P REMARK 900 RELATED ID: 1WL6 RELATED DB: PDB REMARK 900 MG-SUBSTITUTED AMINOPEPTIDASE P REMARK 900 RELATED ID: 1WLR RELATED DB: PDB REMARK 900 APO AMINOPEPTIDASE P DBREF 2BWT A 1 440 UNP P15034 AMPP_ECOLI 1 440 SEQADV 2BWT ALA A 260 UNP P15034 ASP 260 ENGINEERED MUTATION SEQRES 1 A 440 SER GLU ILE SER ARG GLN GLU PHE GLN ARG ARG ARG GLN SEQRES 2 A 440 ALA LEU VAL GLU GLN MET GLN PRO GLY SER ALA ALA LEU SEQRES 3 A 440 ILE PHE ALA ALA PRO GLU VAL THR ARG SER ALA ASP SER SEQRES 4 A 440 GLU TYR PRO TYR ARG GLN ASN SER ASP PHE TRP TYR PHE SEQRES 5 A 440 THR GLY PHE ASN GLU PRO GLU ALA VAL LEU VAL LEU ILE SEQRES 6 A 440 LYS SER ASP ASP THR HIS ASN HIS SER VAL LEU PHE ASN SEQRES 7 A 440 ARG VAL ARG ASP LEU THR ALA GLU ILE TRP PHE GLY ARG SEQRES 8 A 440 ARG LEU GLY GLN ASP ALA ALA PRO GLU LYS LEU GLY VAL SEQRES 9 A 440 ASP ARG ALA LEU ALA PHE SER GLU ILE ASN GLN GLN LEU SEQRES 10 A 440 TYR GLN LEU LEU ASN GLY LEU ASP VAL VAL TYR HIS ALA SEQRES 11 A 440 GLN GLY GLU TYR ALA TYR ALA ASP VAL ILE VAL ASN SER SEQRES 12 A 440 ALA LEU GLU LYS LEU ARG LYS GLY SER ARG GLN ASN LEU SEQRES 13 A 440 THR ALA PRO ALA THR MET ILE ASP TRP ARG PRO VAL VAL SEQRES 14 A 440 HIS GLU MET ARG LEU PHE LYS SER PRO GLU GLU ILE ALA SEQRES 15 A 440 VAL LEU ARG ARG ALA GLY GLU ILE THR ALA MET ALA HIS SEQRES 16 A 440 THR ARG ALA MET GLU LYS CYS ARG PRO GLY MET PHE GLU SEQRES 17 A 440 TYR HIS LEU GLU GLY GLU ILE HIS HIS GLU PHE ASN ARG SEQRES 18 A 440 HIS GLY ALA ARG TYR PRO SER TYR ASN THR ILE VAL GLY SEQRES 19 A 440 SER GLY GLU ASN GLY CYS ILE LEU HIS TYR THR GLU ASN SEQRES 20 A 440 GLU CYS GLU MET ARG ASP GLY ASP LEU VAL LEU ILE ALA SEQRES 21 A 440 ALA GLY CYS GLU TYR LYS GLY TYR ALA GLY ASP ILE THR SEQRES 22 A 440 ARG THR PHE PRO VAL ASN GLY LYS PHE THR GLN ALA GLN SEQRES 23 A 440 ARG GLU ILE TYR ASP ILE VAL LEU GLU SER LEU GLU THR SEQRES 24 A 440 SER LEU ARG LEU TYR ARG PRO GLY THR SER ILE LEU GLU SEQRES 25 A 440 VAL THR GLY GLU VAL VAL ARG ILE MET VAL SER GLY LEU SEQRES 26 A 440 VAL LYS LEU GLY ILE LEU LYS GLY ASP VAL ASP GLU LEU SEQRES 27 A 440 ILE ALA GLN ASN ALA HIS ARG PRO PHE PHE MET HIS GLY SEQRES 28 A 440 LEU SER HIS TRP LEU GLY LEU ASP VAL HIS ASP VAL GLY SEQRES 29 A 440 VAL TYR GLY GLN ASP ARG SER ARG ILE LEU GLU PRO GLY SEQRES 30 A 440 MET VAL LEU THR VAL GLU PRO GLY LEU TYR ILE ALA PRO SEQRES 31 A 440 ASP ALA GLU VAL PRO GLU GLN TYR ARG GLY ILE GLY ILE SEQRES 32 A 440 ARG ILE GLU ASP ASP ILE VAL ILE THR GLU THR GLY ASN SEQRES 33 A 440 GLU ASN LEU THR ALA SER VAL VAL LYS LYS PRO GLU GLU SEQRES 34 A 440 ILE GLU ALA LEU MET VAL ALA ALA ARG LYS GLN HET MN A1441 1 HET MG A1442 1 HET FLC A1443 13 HET MPD A1444 8 HETNAM MN MANGANESE (II) ION HETNAM MG MAGNESIUM ION HETNAM FLC CITRATE ANION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 2 MN MN 2+ FORMUL 3 MG MG 2+ FORMUL 4 FLC C6 H5 O7 3- FORMUL 5 MPD C6 H14 O2 FORMUL 6 HOH *41(H2 O) HELIX 1 1 SER A 4 MET A 19 1 16 HELIX 2 2 ASN A 46 GLY A 54 1 9 HELIX 3 3 ASP A 82 GLY A 90 1 9 HELIX 4 4 LEU A 93 GLY A 103 1 11 HELIX 5 5 GLU A 112 ASN A 122 1 11 HELIX 6 6 TYR A 134 GLY A 151 1 18 HELIX 7 7 SER A 152 ASN A 155 5 4 HELIX 8 8 TRP A 165 PHE A 175 1 11 HELIX 9 9 SER A 177 CYS A 202 1 26 HELIX 10 10 PHE A 207 HIS A 222 1 16 HELIX 11 11 GLU A 237 ILE A 241 5 5 HELIX 12 12 THR A 283 TYR A 304 1 22 HELIX 13 13 SER A 309 LEU A 328 1 20 HELIX 14 14 ASP A 334 GLN A 341 1 8 HELIX 15 15 GLY A 367 SER A 371 5 5 HELIX 16 16 PRO A 395 ARG A 399 5 5 HELIX 17 17 LYS A 426 LYS A 439 1 14 SHEET 1 AA 6 ARG A 106 ALA A 109 0 SHEET 2 AA 6 ASN A 72 ASN A 78 1 O SER A 74 N ARG A 106 SHEET 3 AA 6 VAL A 61 LYS A 66 -1 O VAL A 61 N PHE A 77 SHEET 4 AA 6 SER A 23 PHE A 28 -1 O SER A 23 N LYS A 66 SHEET 5 AA 6 VAL A 126 HIS A 129 1 O VAL A 126 N ALA A 24 SHEET 6 AA 6 THR A 161 ILE A 163 1 O THR A 161 N VAL A 127 SHEET 1 AB 2 THR A 34 SER A 36 0 SHEET 2 AB 2 SER A 39 GLU A 40 -1 O SER A 39 N ARG A 35 SHEET 1 AC 3 ILE A 232 SER A 235 0 SHEET 2 AC 3 LEU A 256 ALA A 261 -1 O LEU A 258 N GLY A 234 SHEET 3 AC 3 ILE A 272 PRO A 277 -1 O ILE A 272 N ALA A 261 SHEET 1 AD 2 GLU A 264 TYR A 265 0 SHEET 2 AD 2 TYR A 268 ALA A 269 -1 O TYR A 268 N TYR A 265 SHEET 1 AE 3 VAL A 379 VAL A 382 0 SHEET 2 AE 3 ASP A 407 ILE A 411 -1 O ASP A 407 N VAL A 382 SHEET 3 AE 3 ASN A 416 ASN A 418 -1 O GLU A 417 N VAL A 410 SHEET 1 AF 2 GLY A 385 ILE A 388 0 SHEET 2 AF 2 ILE A 401 ARG A 404 -1 O ILE A 401 N ILE A 388 LINK OD2 ASP A 271 MN MN A1441 1555 1555 2.05 LINK NE2 HIS A 354 MN MN A1441 1555 1555 2.22 LINK OE2 GLU A 383 MN MN A1441 1555 1555 2.18 LINK OE2 GLU A 406 MN MN A1441 1555 1555 2.15 LINK MG MG A1442 O HOH A2022 1555 6555 2.17 LINK MG MG A1442 O HOH A2023 1555 6555 2.18 LINK MG MG A1442 O HOH A2024 1555 6555 2.16 LINK MG MG A1442 O HOH A2034 1555 1555 2.17 LINK MG MG A1442 O HOH A2035 1555 1555 2.18 LINK MG MG A1442 O HOH A2036 1555 1555 2.18 SITE 1 AC1 4 ASP A 271 HIS A 354 GLU A 383 GLU A 406 SITE 1 AC2 6 HOH A2022 HOH A2023 HOH A2024 HOH A2034 SITE 2 AC2 6 HOH A2035 HOH A2036 SITE 1 AC3 4 ARG A 186 MET A 193 ARG A 221 HIS A 222 SITE 1 AC4 6 TRP A 88 HIS A 243 GLY A 351 HIS A 354 SITE 2 AC4 6 HIS A 361 GLU A 383 CRYST1 137.588 137.588 231.948 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007268 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007268 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004311 0.00000