data_2BYC # _entry.id 2BYC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2BYC PDBE EBI-25118 WWPDB D_1290025118 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2BYC _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2005-07-29 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Jung, A.' 1 'Domratcheva, T.' 2 'Tarutina, M.' 3 'Wu, Q.' 4 'Ko, W.H.' 5 'Shoeman, R.L.' 6 'Gomelsky, M.' 7 'Gardner, K.H.' 8 'Schlichting, I.' 9 # _citation.id primary _citation.title 'Structure of a Bacterial Bluf Photoreceptor: Insights Into Blue Light-Mediated Signal Transduction.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 102 _citation.page_first 12350 _citation.page_last ? _citation.year 2005 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16107542 _citation.pdbx_database_id_DOI 10.1073/PNAS.0500722102 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Jung, A.' 1 primary 'Domratcheva, T.' 2 primary 'Tarutina, M.' 3 primary 'Wu, Q.' 4 primary 'Ko, W.H.' 5 primary 'Shoeman, R.L.' 6 primary 'Gomelsky, M.' 7 primary 'Gardner, K.H.' 8 primary 'Schlichting, I.' 9 # _cell.entry_id 2BYC _cell.length_a 36.600 _cell.length_b 65.000 _cell.length_c 106.900 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BYC _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'BLUE-LIGHT RECEPTOR OF THE BLUF-FAMILY' 15559.880 2 ? ? ? ? 2 non-polymer syn 'FLAVIN MONONUCLEOTIDE' 456.344 2 ? ? ? ? 3 water nat water 18.015 102 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'BLRB, BLUE LIGHT SENSING' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;FMDELVSLTYRSRVRLADPVADIVQIMRASRVRNLRLGITGILLYNGVHFVQTIEGPRSACDELFRLISADPRHQEILAF DLEPITARRFPDWSMRIVSRKELRALAPDLERLDLSGPEDVAELHRTIAASLSRGDA ; _entity_poly.pdbx_seq_one_letter_code_can ;FMDELVSLTYRSRVRLADPVADIVQIMRASRVRNLRLGITGILLYNGVHFVQTIEGPRSACDELFRLISADPRHQEILAF DLEPITARRFPDWSMRIVSRKELRALAPDLERLDLSGPEDVAELHRTIAASLSRGDA ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PHE n 1 2 MET n 1 3 ASP n 1 4 GLU n 1 5 LEU n 1 6 VAL n 1 7 SER n 1 8 LEU n 1 9 THR n 1 10 TYR n 1 11 ARG n 1 12 SER n 1 13 ARG n 1 14 VAL n 1 15 ARG n 1 16 LEU n 1 17 ALA n 1 18 ASP n 1 19 PRO n 1 20 VAL n 1 21 ALA n 1 22 ASP n 1 23 ILE n 1 24 VAL n 1 25 GLN n 1 26 ILE n 1 27 MET n 1 28 ARG n 1 29 ALA n 1 30 SER n 1 31 ARG n 1 32 VAL n 1 33 ARG n 1 34 ASN n 1 35 LEU n 1 36 ARG n 1 37 LEU n 1 38 GLY n 1 39 ILE n 1 40 THR n 1 41 GLY n 1 42 ILE n 1 43 LEU n 1 44 LEU n 1 45 TYR n 1 46 ASN n 1 47 GLY n 1 48 VAL n 1 49 HIS n 1 50 PHE n 1 51 VAL n 1 52 GLN n 1 53 THR n 1 54 ILE n 1 55 GLU n 1 56 GLY n 1 57 PRO n 1 58 ARG n 1 59 SER n 1 60 ALA n 1 61 CYS n 1 62 ASP n 1 63 GLU n 1 64 LEU n 1 65 PHE n 1 66 ARG n 1 67 LEU n 1 68 ILE n 1 69 SER n 1 70 ALA n 1 71 ASP n 1 72 PRO n 1 73 ARG n 1 74 HIS n 1 75 GLN n 1 76 GLU n 1 77 ILE n 1 78 LEU n 1 79 ALA n 1 80 PHE n 1 81 ASP n 1 82 LEU n 1 83 GLU n 1 84 PRO n 1 85 ILE n 1 86 THR n 1 87 ALA n 1 88 ARG n 1 89 ARG n 1 90 PHE n 1 91 PRO n 1 92 ASP n 1 93 TRP n 1 94 SER n 1 95 MET n 1 96 ARG n 1 97 ILE n 1 98 VAL n 1 99 SER n 1 100 ARG n 1 101 LYS n 1 102 GLU n 1 103 LEU n 1 104 ARG n 1 105 ALA n 1 106 LEU n 1 107 ALA n 1 108 PRO n 1 109 ASP n 1 110 LEU n 1 111 GLU n 1 112 ARG n 1 113 LEU n 1 114 ASP n 1 115 LEU n 1 116 SER n 1 117 GLY n 1 118 PRO n 1 119 GLU n 1 120 ASP n 1 121 VAL n 1 122 ALA n 1 123 GLU n 1 124 LEU n 1 125 HIS n 1 126 ARG n 1 127 THR n 1 128 ILE n 1 129 ALA n 1 130 ALA n 1 131 SER n 1 132 LEU n 1 133 SER n 1 134 ARG n 1 135 GLY n 1 136 ASP n 1 137 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'RHODOBACTER SPHAEROIDES' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1063 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PHIS-GB1-PARALLEL1 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q3IYE4_RHOS4 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q3IYE4 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2BYC A 2 ? 137 ? Q3IYE4 1 ? 136 ? 1 136 2 1 2BYC B 2 ? 137 ? Q3IYE4 1 ? 136 ? 501 636 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2BYC PHE A 1 ? UNP Q3IYE4 ? ? 'expression tag' 0 1 1 2BYC ARG A 134 ? UNP Q3IYE4 LYS 133 conflict 133 2 2 2BYC PHE B 1 ? UNP Q3IYE4 ? ? 'expression tag' 500 3 2 2BYC ARG B 134 ? UNP Q3IYE4 LYS 133 conflict 633 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FMN non-polymer . 'FLAVIN MONONUCLEOTIDE' 'RIBOFLAVIN MONOPHOSPHATE' 'C17 H21 N4 O9 P' 456.344 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2BYC _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.1 _exptl_crystal.density_percent_sol 41.5 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.00 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.1 M ACETATE BUFFER, PH 4.5 0.2 M CALCIUM ACETATE 0.05 M DTT 28 % PEG 400' # _diffrn.id 1 _diffrn.ambient_temp 80.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.071 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X06SA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X06SA _diffrn_source.pdbx_wavelength 1.071 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2BYC _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.000 _reflns.d_resolution_high 1.900 _reflns.number_obs 20247 _reflns.number_all ? _reflns.percent_possible_obs 97.0 _reflns.pdbx_Rmerge_I_obs 0.12000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 8.6000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.200 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 2.00 _reflns_shell.percent_possible_all 99.0 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.900 _reflns_shell.pdbx_redundancy 4.00 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2BYC _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag UNVERIFIED _refine.ls_number_reflns_obs 19220 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 15.00 _refine.ls_d_res_high 1.90 _refine.ls_percent_reflns_obs 100.0 _refine.ls_R_factor_obs 0.234 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.232 _refine.ls_R_factor_R_free 0.288 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 1011 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.931 _refine.correlation_coeff_Fo_to_Fc_free 0.889 _refine.B_iso_mean 23.82 _refine.aniso_B[1][1] 0.92000 _refine.aniso_B[2][2] 0.44000 _refine.aniso_B[3][3] -1.35000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. THE RFREE VALUES ARE RELATIVELY HIGH. THEY DO NOT DECREASE WHEN APPLYING DIFFERENT RESOLUTION OR SIGMA CUT- OFFS (HIGH AND OR LOW), OR INCLUSION OF (PARTIAL) NCS. ALTHOUGH WE FOUND RELATIVELY FEW WATER MOLECULES, THERE ARE NO UNEXPLAINED PEAKS IN THE FOBS-FCALC ELECTRON DENSITY MAPS. THERE IS NO INDICATION FOR TWINNING, MOREOVER, THE RSYM AND RFREE VALUES DO NOT DECREASE WHEN ANALYSING THE DATA IN ANY OF THE THREE MONOCLINIC POSSIBILITIES. THE HIGH R-FACTORS MAY BE CAUSED BY THE TRANSLATIONAL NCS (0.5, 0.5, 0.007) THAT RELATES THE TWO MONOMERS IN THE AU (VAJDOS, F.F., YOO, S., HOUSEWEART, M., SUNDQUIST, W.I. AND HILL, C.P. (1997) PROTEIN SCI. 6, 2297) ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MIRAS _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.216 _refine.pdbx_overall_ESU_R_Free 0.193 _refine.overall_SU_ML 0.175 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 6.490 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2150 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 62 _refine_hist.number_atoms_solvent 102 _refine_hist.number_atoms_total 2314 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 15.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.023 0.022 ? 2254 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.251 2.015 ? 3062 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.911 5.000 ? 267 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.765 21.321 ? 106 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 18.256 15.000 ? 388 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 19.681 15.000 ? 35 'X-RAY DIFFRACTION' ? r_chiral_restr 0.141 0.200 ? 349 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.010 0.020 ? 1683 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.259 0.200 ? 1135 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.333 0.200 ? 1584 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.155 0.200 ? 143 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.315 0.200 ? 65 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.318 0.200 ? 6 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.486 1.500 ? 1393 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2.249 2.000 ? 2181 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 3.604 3.000 ? 1028 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 5.629 4.500 ? 881 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.90 _refine_ls_shell.d_res_low 1.95 _refine_ls_shell.number_reflns_R_work 1398 _refine_ls_shell.R_factor_R_work 0.3200 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.3840 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 74 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2BYC _struct.title 'BlrB - a BLUF protein, dark state structure' _struct.pdbx_descriptor 'BLUE-LIGHT RECEPTOR OF THE BLUF-FAMILY' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2BYC _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.text 'SIGNALING PROTEIN, PHOTORECEPTOR, FLAVIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 18 ? GLY A 38 ? ASP A 17 GLY A 37 1 ? 21 HELX_P HELX_P2 2 ARG A 58 ? ALA A 70 ? ARG A 57 ALA A 69 1 ? 13 HELX_P HELX_P3 3 SER A 99 ? ALA A 107 ? SER A 98 ALA A 106 1 ? 9 HELX_P HELX_P4 4 PRO A 108 ? GLU A 111 ? PRO A 107 GLU A 110 5 ? 4 HELX_P HELX_P5 5 GLU A 119 ? LEU A 132 ? GLU A 118 LEU A 131 1 ? 14 HELX_P HELX_P6 6 ASP B 18 ? GLY B 38 ? ASP B 517 GLY B 537 1 ? 21 HELX_P HELX_P7 7 ARG B 58 ? ASP B 71 ? ARG B 557 ASP B 570 1 ? 14 HELX_P HELX_P8 8 SER B 99 ? ALA B 107 ? SER B 598 ALA B 606 1 ? 9 HELX_P HELX_P9 9 PRO B 108 ? GLU B 111 ? PRO B 607 GLU B 610 5 ? 4 HELX_P HELX_P10 10 GLU B 119 ? ALA B 130 ? GLU B 618 ALA B 629 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 5 ? BA ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AA 4 5 ? parallel BA 1 2 ? anti-parallel BA 2 3 ? anti-parallel BA 3 4 ? anti-parallel BA 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 HIS A 74 ? PRO A 84 ? HIS A 73 PRO A 83 AA 2 LEU A 5 ? VAL A 14 ? LEU A 4 VAL A 13 AA 3 HIS A 49 ? PRO A 57 ? HIS A 48 PRO A 56 AA 4 THR A 40 ? TYR A 45 ? THR A 39 TYR A 44 AA 5 ARG A 96 ? VAL A 98 ? ARG A 95 VAL A 97 BA 1 HIS B 74 ? PRO B 84 ? HIS B 573 PRO B 583 BA 2 LEU B 5 ? VAL B 14 ? LEU B 504 VAL B 513 BA 3 HIS B 49 ? PRO B 57 ? HIS B 548 PRO B 556 BA 4 THR B 40 ? TYR B 45 ? THR B 539 TYR B 544 BA 5 ARG B 96 ? VAL B 98 ? ARG B 595 VAL B 597 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N GLU A 83 ? N GLU A 82 O SER A 7 ? O SER A 6 AA 2 3 N SER A 12 ? N SER A 11 O PHE A 50 ? O PHE A 49 AA 3 4 N GLU A 55 ? N GLU A 54 O THR A 40 ? O THR A 39 AA 4 5 N LEU A 43 ? N LEU A 42 O ARG A 96 ? O ARG A 95 BA 1 2 N GLU B 83 ? N GLU B 582 O SER B 7 ? O SER B 506 BA 2 3 N SER B 12 ? N SER B 511 O PHE B 50 ? O PHE B 549 BA 3 4 N GLU B 55 ? N GLU B 554 O THR B 40 ? O THR B 539 BA 4 5 N LEU B 43 ? N LEU B 542 O ARG B 96 ? O ARG B 595 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 11 'BINDING SITE FOR RESIDUE FMN A1137' AC2 Software ? ? ? ? 15 'BINDING SITE FOR RESIDUE FMN B1632' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 11 TYR A 10 ? TYR A 9 . ? 1_555 ? 2 AC1 11 ILE A 26 ? ILE A 25 . ? 1_555 ? 3 AC1 11 ALA A 29 ? ALA A 28 . ? 1_555 ? 4 AC1 11 SER A 30 ? SER A 29 . ? 1_555 ? 5 AC1 11 ARG A 33 ? ARG A 32 . ? 1_555 ? 6 AC1 11 ASN A 34 ? ASN A 33 . ? 1_555 ? 7 AC1 11 PHE A 50 ? PHE A 49 . ? 1_555 ? 8 AC1 11 GLN A 52 ? GLN A 51 . ? 1_555 ? 9 AC1 11 LEU A 64 ? LEU A 63 . ? 1_555 ? 10 AC1 11 ASP A 71 ? ASP A 70 . ? 1_555 ? 11 AC1 11 HIS A 74 ? HIS A 73 . ? 1_555 ? 12 AC2 15 TYR B 10 ? TYR B 509 . ? 1_555 ? 13 AC2 15 ILE B 26 ? ILE B 525 . ? 1_555 ? 14 AC2 15 ALA B 29 ? ALA B 528 . ? 1_555 ? 15 AC2 15 SER B 30 ? SER B 529 . ? 1_555 ? 16 AC2 15 ARG B 33 ? ARG B 532 . ? 1_555 ? 17 AC2 15 ASN B 34 ? ASN B 533 . ? 1_555 ? 18 AC2 15 PHE B 50 ? PHE B 549 . ? 1_555 ? 19 AC2 15 GLN B 52 ? GLN B 551 . ? 1_555 ? 20 AC2 15 LEU B 64 ? LEU B 563 . ? 1_555 ? 21 AC2 15 ILE B 68 ? ILE B 567 . ? 1_555 ? 22 AC2 15 ASP B 71 ? ASP B 570 . ? 1_555 ? 23 AC2 15 ARG B 73 ? ARG B 572 . ? 1_555 ? 24 AC2 15 MET B 95 ? MET B 594 . ? 1_555 ? 25 AC2 15 HOH F . ? HOH B 2049 . ? 1_555 ? 26 AC2 15 HOH F . ? HOH B 2050 . ? 1_555 ? # _database_PDB_matrix.entry_id 2BYC _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2BYC _atom_sites.fract_transf_matrix[1][1] 0.027322 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015385 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009355 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PHE 1 0 0 PHE PHE A . n A 1 2 MET 2 1 1 MET MET A . n A 1 3 ASP 3 2 2 ASP ASP A . n A 1 4 GLU 4 3 3 GLU GLU A . n A 1 5 LEU 5 4 4 LEU LEU A . n A 1 6 VAL 6 5 5 VAL VAL A . n A 1 7 SER 7 6 6 SER SER A . n A 1 8 LEU 8 7 7 LEU LEU A . n A 1 9 THR 9 8 8 THR THR A . n A 1 10 TYR 10 9 9 TYR TYR A . n A 1 11 ARG 11 10 10 ARG ARG A . n A 1 12 SER 12 11 11 SER SER A . n A 1 13 ARG 13 12 12 ARG ARG A . n A 1 14 VAL 14 13 13 VAL VAL A . n A 1 15 ARG 15 14 14 ARG ARG A . n A 1 16 LEU 16 15 15 LEU LEU A . n A 1 17 ALA 17 16 16 ALA ALA A . n A 1 18 ASP 18 17 17 ASP ASP A . n A 1 19 PRO 19 18 18 PRO PRO A . n A 1 20 VAL 20 19 19 VAL VAL A . n A 1 21 ALA 21 20 20 ALA ALA A . n A 1 22 ASP 22 21 21 ASP ASP A . n A 1 23 ILE 23 22 22 ILE ILE A . n A 1 24 VAL 24 23 23 VAL VAL A . n A 1 25 GLN 25 24 24 GLN GLN A . n A 1 26 ILE 26 25 25 ILE ILE A . n A 1 27 MET 27 26 26 MET MET A . n A 1 28 ARG 28 27 27 ARG ARG A . n A 1 29 ALA 29 28 28 ALA ALA A . n A 1 30 SER 30 29 29 SER SER A . n A 1 31 ARG 31 30 30 ARG ARG A . n A 1 32 VAL 32 31 31 VAL VAL A . n A 1 33 ARG 33 32 32 ARG ARG A . n A 1 34 ASN 34 33 33 ASN ASN A . n A 1 35 LEU 35 34 34 LEU LEU A . n A 1 36 ARG 36 35 35 ARG ARG A . n A 1 37 LEU 37 36 36 LEU LEU A . n A 1 38 GLY 38 37 37 GLY GLY A . n A 1 39 ILE 39 38 38 ILE ILE A . n A 1 40 THR 40 39 39 THR THR A . n A 1 41 GLY 41 40 40 GLY GLY A . n A 1 42 ILE 42 41 41 ILE ILE A . n A 1 43 LEU 43 42 42 LEU LEU A . n A 1 44 LEU 44 43 43 LEU LEU A . n A 1 45 TYR 45 44 44 TYR TYR A . n A 1 46 ASN 46 45 45 ASN ASN A . n A 1 47 GLY 47 46 46 GLY GLY A . n A 1 48 VAL 48 47 47 VAL VAL A . n A 1 49 HIS 49 48 48 HIS HIS A . n A 1 50 PHE 50 49 49 PHE PHE A . n A 1 51 VAL 51 50 50 VAL VAL A . n A 1 52 GLN 52 51 51 GLN GLN A . n A 1 53 THR 53 52 52 THR THR A . n A 1 54 ILE 54 53 53 ILE ILE A . n A 1 55 GLU 55 54 54 GLU GLU A . n A 1 56 GLY 56 55 55 GLY GLY A . n A 1 57 PRO 57 56 56 PRO PRO A . n A 1 58 ARG 58 57 57 ARG ARG A . n A 1 59 SER 59 58 58 SER SER A . n A 1 60 ALA 60 59 59 ALA ALA A . n A 1 61 CYS 61 60 60 CYS CYS A . n A 1 62 ASP 62 61 61 ASP ASP A . n A 1 63 GLU 63 62 62 GLU GLU A . n A 1 64 LEU 64 63 63 LEU LEU A . n A 1 65 PHE 65 64 64 PHE PHE A . n A 1 66 ARG 66 65 65 ARG ARG A . n A 1 67 LEU 67 66 66 LEU LEU A . n A 1 68 ILE 68 67 67 ILE ILE A . n A 1 69 SER 69 68 68 SER SER A . n A 1 70 ALA 70 69 69 ALA ALA A . n A 1 71 ASP 71 70 70 ASP ASP A . n A 1 72 PRO 72 71 71 PRO PRO A . n A 1 73 ARG 73 72 72 ARG ARG A . n A 1 74 HIS 74 73 73 HIS HIS A . n A 1 75 GLN 75 74 74 GLN GLN A . n A 1 76 GLU 76 75 75 GLU GLU A . n A 1 77 ILE 77 76 76 ILE ILE A . n A 1 78 LEU 78 77 77 LEU LEU A . n A 1 79 ALA 79 78 78 ALA ALA A . n A 1 80 PHE 80 79 79 PHE PHE A . n A 1 81 ASP 81 80 80 ASP ASP A . n A 1 82 LEU 82 81 81 LEU LEU A . n A 1 83 GLU 83 82 82 GLU GLU A . n A 1 84 PRO 84 83 83 PRO PRO A . n A 1 85 ILE 85 84 84 ILE ILE A . n A 1 86 THR 86 85 85 THR THR A . n A 1 87 ALA 87 86 86 ALA ALA A . n A 1 88 ARG 88 87 87 ARG ARG A . n A 1 89 ARG 89 88 88 ARG ARG A . n A 1 90 PHE 90 89 89 PHE PHE A . n A 1 91 PRO 91 90 90 PRO PRO A . n A 1 92 ASP 92 91 91 ASP ASP A . n A 1 93 TRP 93 92 92 TRP TRP A . n A 1 94 SER 94 93 93 SER SER A . n A 1 95 MET 95 94 94 MET MET A . n A 1 96 ARG 96 95 95 ARG ARG A . n A 1 97 ILE 97 96 96 ILE ILE A . n A 1 98 VAL 98 97 97 VAL VAL A . n A 1 99 SER 99 98 98 SER SER A . n A 1 100 ARG 100 99 99 ARG ARG A . n A 1 101 LYS 101 100 100 LYS LYS A . n A 1 102 GLU 102 101 101 GLU GLU A . n A 1 103 LEU 103 102 102 LEU LEU A . n A 1 104 ARG 104 103 103 ARG ARG A . n A 1 105 ALA 105 104 104 ALA ALA A . n A 1 106 LEU 106 105 105 LEU LEU A . n A 1 107 ALA 107 106 106 ALA ALA A . n A 1 108 PRO 108 107 107 PRO PRO A . n A 1 109 ASP 109 108 108 ASP ASP A . n A 1 110 LEU 110 109 109 LEU LEU A . n A 1 111 GLU 111 110 110 GLU GLU A . n A 1 112 ARG 112 111 111 ARG ARG A . n A 1 113 LEU 113 112 112 LEU LEU A . n A 1 114 ASP 114 113 113 ASP ASP A . n A 1 115 LEU 115 114 114 LEU LEU A . n A 1 116 SER 116 115 115 SER SER A . n A 1 117 GLY 117 116 116 GLY GLY A . n A 1 118 PRO 118 117 117 PRO PRO A . n A 1 119 GLU 119 118 118 GLU GLU A . n A 1 120 ASP 120 119 119 ASP ASP A . n A 1 121 VAL 121 120 120 VAL VAL A . n A 1 122 ALA 122 121 121 ALA ALA A . n A 1 123 GLU 123 122 122 GLU GLU A . n A 1 124 LEU 124 123 123 LEU LEU A . n A 1 125 HIS 125 124 124 HIS HIS A . n A 1 126 ARG 126 125 125 ARG ARG A . n A 1 127 THR 127 126 126 THR THR A . n A 1 128 ILE 128 127 127 ILE ILE A . n A 1 129 ALA 129 128 128 ALA ALA A . n A 1 130 ALA 130 129 129 ALA ALA A . n A 1 131 SER 131 130 130 SER SER A . n A 1 132 LEU 132 131 131 LEU LEU A . n A 1 133 SER 133 132 132 SER SER A . n A 1 134 ARG 134 133 133 ARG ARG A . n A 1 135 GLY 135 134 134 GLY GLY A . n A 1 136 ASP 136 135 135 ASP ASP A . n A 1 137 ALA 137 136 136 ALA ALA A . n B 1 1 PHE 1 500 500 PHE PHE B . n B 1 2 MET 2 501 501 MET MET B . n B 1 3 ASP 3 502 502 ASP ASP B . n B 1 4 GLU 4 503 503 GLU GLU B . n B 1 5 LEU 5 504 504 LEU LEU B . n B 1 6 VAL 6 505 505 VAL VAL B . n B 1 7 SER 7 506 506 SER SER B . n B 1 8 LEU 8 507 507 LEU LEU B . n B 1 9 THR 9 508 508 THR THR B . n B 1 10 TYR 10 509 509 TYR TYR B . n B 1 11 ARG 11 510 510 ARG ARG B . n B 1 12 SER 12 511 511 SER SER B . n B 1 13 ARG 13 512 512 ARG ARG B . n B 1 14 VAL 14 513 513 VAL VAL B . n B 1 15 ARG 15 514 514 ARG ARG B . n B 1 16 LEU 16 515 515 LEU LEU B . n B 1 17 ALA 17 516 516 ALA ALA B . n B 1 18 ASP 18 517 517 ASP ASP B . n B 1 19 PRO 19 518 518 PRO PRO B . n B 1 20 VAL 20 519 519 VAL VAL B . n B 1 21 ALA 21 520 520 ALA ALA B . n B 1 22 ASP 22 521 521 ASP ASP B . n B 1 23 ILE 23 522 522 ILE ILE B . n B 1 24 VAL 24 523 523 VAL VAL B . n B 1 25 GLN 25 524 524 GLN GLN B . n B 1 26 ILE 26 525 525 ILE ILE B . n B 1 27 MET 27 526 526 MET MET B . n B 1 28 ARG 28 527 527 ARG ARG B . n B 1 29 ALA 29 528 528 ALA ALA B . n B 1 30 SER 30 529 529 SER SER B . n B 1 31 ARG 31 530 530 ARG ARG B . n B 1 32 VAL 32 531 531 VAL VAL B . n B 1 33 ARG 33 532 532 ARG ARG B . n B 1 34 ASN 34 533 533 ASN ASN B . n B 1 35 LEU 35 534 534 LEU LEU B . n B 1 36 ARG 36 535 535 ARG ARG B . n B 1 37 LEU 37 536 536 LEU LEU B . n B 1 38 GLY 38 537 537 GLY GLY B . n B 1 39 ILE 39 538 538 ILE ILE B . n B 1 40 THR 40 539 539 THR THR B . n B 1 41 GLY 41 540 540 GLY GLY B . n B 1 42 ILE 42 541 541 ILE ILE B . n B 1 43 LEU 43 542 542 LEU LEU B . n B 1 44 LEU 44 543 543 LEU LEU B . n B 1 45 TYR 45 544 544 TYR TYR B . n B 1 46 ASN 46 545 545 ASN ASN B . n B 1 47 GLY 47 546 546 GLY GLY B . n B 1 48 VAL 48 547 547 VAL VAL B . n B 1 49 HIS 49 548 548 HIS HIS B . n B 1 50 PHE 50 549 549 PHE PHE B . n B 1 51 VAL 51 550 550 VAL VAL B . n B 1 52 GLN 52 551 551 GLN GLN B . n B 1 53 THR 53 552 552 THR THR B . n B 1 54 ILE 54 553 553 ILE ILE B . n B 1 55 GLU 55 554 554 GLU GLU B . n B 1 56 GLY 56 555 555 GLY GLY B . n B 1 57 PRO 57 556 556 PRO PRO B . n B 1 58 ARG 58 557 557 ARG ARG B . n B 1 59 SER 59 558 558 SER SER B . n B 1 60 ALA 60 559 559 ALA ALA B . n B 1 61 CYS 61 560 560 CYS CYS B . n B 1 62 ASP 62 561 561 ASP ASP B . n B 1 63 GLU 63 562 562 GLU GLU B . n B 1 64 LEU 64 563 563 LEU LEU B . n B 1 65 PHE 65 564 564 PHE PHE B . n B 1 66 ARG 66 565 565 ARG ARG B . n B 1 67 LEU 67 566 566 LEU LEU B . n B 1 68 ILE 68 567 567 ILE ILE B . n B 1 69 SER 69 568 568 SER SER B . n B 1 70 ALA 70 569 569 ALA ALA B . n B 1 71 ASP 71 570 570 ASP ASP B . n B 1 72 PRO 72 571 571 PRO PRO B . n B 1 73 ARG 73 572 572 ARG ARG B . n B 1 74 HIS 74 573 573 HIS HIS B . n B 1 75 GLN 75 574 574 GLN GLN B . n B 1 76 GLU 76 575 575 GLU GLU B . n B 1 77 ILE 77 576 576 ILE ILE B . n B 1 78 LEU 78 577 577 LEU LEU B . n B 1 79 ALA 79 578 578 ALA ALA B . n B 1 80 PHE 80 579 579 PHE PHE B . n B 1 81 ASP 81 580 580 ASP ASP B . n B 1 82 LEU 82 581 581 LEU LEU B . n B 1 83 GLU 83 582 582 GLU GLU B . n B 1 84 PRO 84 583 583 PRO PRO B . n B 1 85 ILE 85 584 584 ILE ILE B . n B 1 86 THR 86 585 585 THR THR B . n B 1 87 ALA 87 586 586 ALA ALA B . n B 1 88 ARG 88 587 587 ARG ARG B . n B 1 89 ARG 89 588 588 ARG ARG B . n B 1 90 PHE 90 589 589 PHE PHE B . n B 1 91 PRO 91 590 590 PRO PRO B . n B 1 92 ASP 92 591 591 ASP ASP B . n B 1 93 TRP 93 592 592 TRP TRP B . n B 1 94 SER 94 593 593 SER SER B . n B 1 95 MET 95 594 594 MET MET B . n B 1 96 ARG 96 595 595 ARG ARG B . n B 1 97 ILE 97 596 596 ILE ILE B . n B 1 98 VAL 98 597 597 VAL VAL B . n B 1 99 SER 99 598 598 SER SER B . n B 1 100 ARG 100 599 599 ARG ARG B . n B 1 101 LYS 101 600 600 LYS LYS B . n B 1 102 GLU 102 601 601 GLU GLU B . n B 1 103 LEU 103 602 602 LEU LEU B . n B 1 104 ARG 104 603 603 ARG ARG B . n B 1 105 ALA 105 604 604 ALA ALA B . n B 1 106 LEU 106 605 605 LEU LEU B . n B 1 107 ALA 107 606 606 ALA ALA B . n B 1 108 PRO 108 607 607 PRO PRO B . n B 1 109 ASP 109 608 608 ASP ASP B . n B 1 110 LEU 110 609 609 LEU LEU B . n B 1 111 GLU 111 610 610 GLU GLU B . n B 1 112 ARG 112 611 611 ARG ARG B . n B 1 113 LEU 113 612 612 LEU LEU B . n B 1 114 ASP 114 613 613 ASP ASP B . n B 1 115 LEU 115 614 614 LEU LEU B . n B 1 116 SER 116 615 615 SER SER B . n B 1 117 GLY 117 616 616 GLY GLY B . n B 1 118 PRO 118 617 617 PRO PRO B . n B 1 119 GLU 119 618 618 GLU GLU B . n B 1 120 ASP 120 619 619 ASP ASP B . n B 1 121 VAL 121 620 620 VAL VAL B . n B 1 122 ALA 122 621 621 ALA ALA B . n B 1 123 GLU 123 622 622 GLU GLU B . n B 1 124 LEU 124 623 623 LEU LEU B . n B 1 125 HIS 125 624 624 HIS HIS B . n B 1 126 ARG 126 625 625 ARG ARG B . n B 1 127 THR 127 626 626 THR THR B . n B 1 128 ILE 128 627 627 ILE ILE B . n B 1 129 ALA 129 628 628 ALA ALA B . n B 1 130 ALA 130 629 629 ALA ALA B . n B 1 131 SER 131 630 630 SER SER B . n B 1 132 LEU 132 631 631 LEU LEU B . n B 1 133 SER 133 632 ? ? ? B . n B 1 134 ARG 134 633 ? ? ? B . n B 1 135 GLY 135 634 ? ? ? B . n B 1 136 ASP 136 635 ? ? ? B . n B 1 137 ALA 137 636 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN 1 1137 1137 FMN FMN A . D 2 FMN 1 1632 1632 FMN FMN B . E 3 HOH 1 2001 2001 HOH HOH A . E 3 HOH 2 2002 2002 HOH HOH A . E 3 HOH 3 2003 2003 HOH HOH A . E 3 HOH 4 2004 2004 HOH HOH A . E 3 HOH 5 2005 2005 HOH HOH A . E 3 HOH 6 2006 2006 HOH HOH A . E 3 HOH 7 2007 2007 HOH HOH A . E 3 HOH 8 2008 2008 HOH HOH A . E 3 HOH 9 2009 2009 HOH HOH A . E 3 HOH 10 2010 2010 HOH HOH A . E 3 HOH 11 2011 2011 HOH HOH A . E 3 HOH 12 2012 2012 HOH HOH A . E 3 HOH 13 2013 2013 HOH HOH A . E 3 HOH 14 2014 2014 HOH HOH A . E 3 HOH 15 2015 2015 HOH HOH A . E 3 HOH 16 2016 2016 HOH HOH A . E 3 HOH 17 2017 2017 HOH HOH A . E 3 HOH 18 2018 2018 HOH HOH A . E 3 HOH 19 2019 2019 HOH HOH A . E 3 HOH 20 2020 2020 HOH HOH A . E 3 HOH 21 2021 2021 HOH HOH A . E 3 HOH 22 2022 2022 HOH HOH A . E 3 HOH 23 2023 2023 HOH HOH A . E 3 HOH 24 2024 2024 HOH HOH A . E 3 HOH 25 2025 2025 HOH HOH A . E 3 HOH 26 2026 2026 HOH HOH A . E 3 HOH 27 2027 2027 HOH HOH A . E 3 HOH 28 2028 2028 HOH HOH A . E 3 HOH 29 2029 2029 HOH HOH A . E 3 HOH 30 2030 2030 HOH HOH A . E 3 HOH 31 2031 2031 HOH HOH A . E 3 HOH 32 2032 2032 HOH HOH A . E 3 HOH 33 2033 2033 HOH HOH A . E 3 HOH 34 2034 2034 HOH HOH A . E 3 HOH 35 2035 2035 HOH HOH A . E 3 HOH 36 2036 2036 HOH HOH A . E 3 HOH 37 2037 2037 HOH HOH A . E 3 HOH 38 2038 2038 HOH HOH A . E 3 HOH 39 2039 2039 HOH HOH A . E 3 HOH 40 2040 2040 HOH HOH A . E 3 HOH 41 2041 2041 HOH HOH A . E 3 HOH 42 2042 2042 HOH HOH A . E 3 HOH 43 2043 2043 HOH HOH A . E 3 HOH 44 2044 2044 HOH HOH A . E 3 HOH 45 2045 2045 HOH HOH A . E 3 HOH 46 2046 2046 HOH HOH A . E 3 HOH 47 2047 2047 HOH HOH A . E 3 HOH 48 2048 2048 HOH HOH A . E 3 HOH 49 2049 2049 HOH HOH A . E 3 HOH 50 2050 2050 HOH HOH A . E 3 HOH 51 2051 2051 HOH HOH A . E 3 HOH 52 2052 2052 HOH HOH A . F 3 HOH 1 2001 2001 HOH HOH B . F 3 HOH 2 2002 2002 HOH HOH B . F 3 HOH 3 2003 2003 HOH HOH B . F 3 HOH 4 2004 2004 HOH HOH B . F 3 HOH 5 2005 2005 HOH HOH B . F 3 HOH 6 2006 2006 HOH HOH B . F 3 HOH 7 2007 2007 HOH HOH B . F 3 HOH 8 2008 2008 HOH HOH B . F 3 HOH 9 2009 2009 HOH HOH B . F 3 HOH 10 2010 2010 HOH HOH B . F 3 HOH 11 2011 2011 HOH HOH B . F 3 HOH 12 2012 2012 HOH HOH B . F 3 HOH 13 2013 2013 HOH HOH B . F 3 HOH 14 2014 2014 HOH HOH B . F 3 HOH 15 2015 2015 HOH HOH B . F 3 HOH 16 2016 2016 HOH HOH B . F 3 HOH 17 2017 2017 HOH HOH B . F 3 HOH 18 2018 2018 HOH HOH B . F 3 HOH 19 2019 2019 HOH HOH B . F 3 HOH 20 2020 2020 HOH HOH B . F 3 HOH 21 2021 2021 HOH HOH B . F 3 HOH 22 2022 2022 HOH HOH B . F 3 HOH 23 2023 2023 HOH HOH B . F 3 HOH 24 2024 2024 HOH HOH B . F 3 HOH 25 2025 2025 HOH HOH B . F 3 HOH 26 2026 2026 HOH HOH B . F 3 HOH 27 2027 2027 HOH HOH B . F 3 HOH 28 2028 2028 HOH HOH B . F 3 HOH 29 2029 2029 HOH HOH B . F 3 HOH 30 2030 2030 HOH HOH B . F 3 HOH 31 2031 2031 HOH HOH B . F 3 HOH 32 2032 2032 HOH HOH B . F 3 HOH 33 2033 2033 HOH HOH B . F 3 HOH 34 2034 2034 HOH HOH B . F 3 HOH 35 2035 2035 HOH HOH B . F 3 HOH 36 2036 2036 HOH HOH B . F 3 HOH 37 2037 2037 HOH HOH B . F 3 HOH 38 2038 2038 HOH HOH B . F 3 HOH 39 2039 2039 HOH HOH B . F 3 HOH 40 2040 2040 HOH HOH B . F 3 HOH 41 2041 2041 HOH HOH B . F 3 HOH 42 2042 2042 HOH HOH B . F 3 HOH 43 2043 2043 HOH HOH B . F 3 HOH 44 2044 2044 HOH HOH B . F 3 HOH 45 2045 2045 HOH HOH B . F 3 HOH 46 2046 2046 HOH HOH B . F 3 HOH 47 2047 2047 HOH HOH B . F 3 HOH 48 2048 2048 HOH HOH B . F 3 HOH 49 2049 2049 HOH HOH B . F 3 HOH 50 2050 2050 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,E 2 1 B,D,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-08-24 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Refinement description' 2 2 'Structure model' 'Version format compliance' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 3.2490 30.1370 12.1150 -0.1077 -0.1782 -0.0166 0.0178 -0.0181 0.0121 0.9523 0.9268 3.1390 -0.2546 0.4866 -0.1459 -0.0487 0.1269 0.0473 0.0464 0.0859 0.0306 -0.0351 0.1802 -0.0372 'X-RAY DIFFRACTION' 2 ? refined 3.4320 33.6280 -4.3010 -0.1037 -0.1946 0.0167 0.0073 0.0262 -0.0138 0.4351 0.4025 4.3231 0.3356 -0.2531 -0.9697 0.1892 0.0813 -0.1481 -0.0263 -0.1604 0.1778 -0.1165 0.2940 -0.0287 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 0 ? ? A 136 ? ? ? ? 'X-RAY DIFFRACTION' 2 1 A 1137 ? ? A 1137 ? ? ? ? 'X-RAY DIFFRACTION' 3 2 B 500 ? ? B 631 ? ? ? ? 'X-RAY DIFFRACTION' 4 2 B 1632 ? ? B 1632 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 XDS 'data reduction' . ? 2 XSCALE 'data scaling' . ? 3 SHARP phasing . ? 4 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OD2 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 ASP _pdbx_validate_symm_contact.auth_seq_id_1 17 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 OG _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 SER _pdbx_validate_symm_contact.auth_seq_id_2 598 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_565 _pdbx_validate_symm_contact.dist 2.15 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A LEU 7 ? ? CG A LEU 7 ? ? CD1 A LEU 7 ? ? 98.02 111.00 -12.98 1.70 N 2 1 NE A ARG 57 ? ? CZ A ARG 57 ? ? NH1 A ARG 57 ? ? 125.20 120.30 4.90 0.50 N 3 1 NE A ARG 57 ? ? CZ A ARG 57 ? ? NH2 A ARG 57 ? ? 113.90 120.30 -6.40 0.50 N 4 1 NE B ARG 510 ? ? CZ B ARG 510 ? ? NH2 B ARG 510 ? ? 116.16 120.30 -4.14 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 106 ? ? -157.07 58.63 2 1 LEU A 131 ? ? -63.71 -177.08 3 1 SER A 132 ? ? 80.59 -59.58 4 1 MET B 594 ? ? -173.97 97.52 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B SER 632 ? B SER 133 2 1 Y 1 B ARG 633 ? B ARG 134 3 1 Y 1 B GLY 634 ? B GLY 135 4 1 Y 1 B ASP 635 ? B ASP 136 5 1 Y 1 B ALA 636 ? B ALA 137 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'FLAVIN MONONUCLEOTIDE' FMN 3 water HOH #