HEADER LIGASE 21-MAR-08 2C00 TITLE CRYSTAL STRUCTURE OF BIOTIN CARBOXYLASE FROM PSEUDOMONAS AERUGINOSA IN TITLE 2 APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIOTIN CARBOXYLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ACETYL-COA CARBOXYLASE SUBUNIT A, ACC; COMPND 5 EC: 6.3.4.14; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NUCLEOTIDE-BINDING, FATTY ACID BIOSYNTHESIS, ATP-GRASP DOMAIN, BIOTIN KEYWDS 2 CARBOXYLASE, LIGASE, BIOTIN, ATP-BINDING, LIPID SYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR I.MOCHALKIN REVDAT 5 13-DEC-23 2C00 1 REMARK REVDAT 4 13-JUL-11 2C00 1 VERSN REVDAT 3 24-FEB-09 2C00 1 VERSN REVDAT 2 30-SEP-08 2C00 1 JRNL REVDAT 1 09-SEP-08 2C00 0 JRNL AUTH I.MOCHALKIN,J.R.MILLER,A.EVDOKIMOV,S.LIGHTLE,C.YAN, JRNL AUTH 2 C.K.STOVER,G.L.WALDROP JRNL TITL STRUCTURAL EVIDENCE FOR SUBSTRATE-INDUCED SYNERGISM AND JRNL TITL 2 HALF-SITES REACTIVITY IN BIOTIN CARBOXYLASE. JRNL REF PROTEIN SCI. V. 17 1706 2008 JRNL REFN ISSN 0961-8368 JRNL PMID 18725455 JRNL DOI 10.1110/PS.035584.108 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 71168 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3769 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5189 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3010 REMARK 3 BIN FREE R VALUE SET COUNT : 289 REMARK 3 BIN FREE R VALUE : 0.3450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6731 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 488 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.52000 REMARK 3 B22 (A**2) : 0.52000 REMARK 3 B33 (A**2) : -0.77000 REMARK 3 B12 (A**2) : 0.26000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.207 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.182 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.116 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.635 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6873 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4720 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9288 ; 1.083 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11498 ; 0.842 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 877 ; 5.811 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 308 ;36.593 ;23.734 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1189 ;13.867 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 57 ;17.158 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1041 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7707 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1354 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1237 ; 0.199 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4738 ; 0.190 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3310 ; 0.168 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 3725 ; 0.081 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 348 ; 0.120 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 6 ; 0.091 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 17 ; 0.224 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.152 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5684 ; 0.723 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7005 ; 0.786 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2833 ; 1.195 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2283 ; 1.800 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 445 REMARK 3 ORIGIN FOR THE GROUP (A): -76.1696 42.3981 2.4376 REMARK 3 T TENSOR REMARK 3 T11: -0.0937 T22: -0.0695 REMARK 3 T33: -0.0530 T12: -0.0407 REMARK 3 T13: -0.0328 T23: 0.0074 REMARK 3 L TENSOR REMARK 3 L11: 0.6312 L22: 0.8516 REMARK 3 L33: 1.8344 L12: -0.3192 REMARK 3 L13: 0.0411 L23: 0.2320 REMARK 3 S TENSOR REMARK 3 S11: -0.0660 S12: -0.0212 S13: 0.0933 REMARK 3 S21: 0.0114 S22: 0.0245 S23: -0.0658 REMARK 3 S31: -0.1094 S32: -0.1260 S33: 0.0415 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 445 REMARK 3 ORIGIN FOR THE GROUP (A): -65.8566 1.2111 12.3108 REMARK 3 T TENSOR REMARK 3 T11: 0.1485 T22: -0.0991 REMARK 3 T33: -0.0108 T12: 0.0343 REMARK 3 T13: -0.0249 T23: 0.0631 REMARK 3 L TENSOR REMARK 3 L11: 0.4504 L22: 2.2808 REMARK 3 L33: 0.0192 L12: 0.4869 REMARK 3 L13: 0.0920 L23: 0.0736 REMARK 3 S TENSOR REMARK 3 S11: -0.0437 S12: -0.0709 S13: -0.2154 REMARK 3 S21: 0.2847 S22: 0.0265 S23: -0.3524 REMARK 3 S31: 0.2325 S32: 0.0302 S33: 0.0172 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2C00 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1290035551. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75554 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 33.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.37000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1DV1 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 76.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS (PH 7.0); 0.2M MGCL2; 17-21% REMARK 280 PEG3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.92133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 97.84267 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 97.84267 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 48.92133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 163 REMARK 465 GLY A 164 REMARK 465 GLY A 165 REMARK 465 ALA A 191 REMARK 465 ALA A 192 REMARK 465 MET A 446 REMARK 465 ASP A 447 REMARK 465 LYS A 448 REMARK 465 HIS A 449 REMARK 465 GLY A 450 REMARK 465 SER A 451 REMARK 465 GLU A 452 REMARK 465 ASN A 453 REMARK 465 LEU A 454 REMARK 465 TYR A 455 REMARK 465 PHE A 456 REMARK 465 GLN A 457 REMARK 465 GLY A 458 REMARK 465 HIS A 459 REMARK 465 HIS A 460 REMARK 465 HIS A 461 REMARK 465 HIS A 462 REMARK 465 HIS A 463 REMARK 465 HIS A 464 REMARK 465 GLY B 164 REMARK 465 GLY B 165 REMARK 465 GLY B 166 REMARK 465 ARG B 167 REMARK 465 ALA B 192 REMARK 465 PHE B 193 REMARK 465 MET B 446 REMARK 465 ASP B 447 REMARK 465 LYS B 448 REMARK 465 HIS B 449 REMARK 465 GLY B 450 REMARK 465 SER B 451 REMARK 465 GLU B 452 REMARK 465 ASN B 453 REMARK 465 LEU B 454 REMARK 465 TYR B 455 REMARK 465 PHE B 456 REMARK 465 GLN B 457 REMARK 465 GLY B 458 REMARK 465 HIS B 459 REMARK 465 HIS B 460 REMARK 465 HIS B 461 REMARK 465 HIS B 462 REMARK 465 HIS B 463 REMARK 465 HIS B 464 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2066 O HOH A 2153 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 9 -173.16 -172.25 REMARK 500 SER A 59 -85.68 -140.97 REMARK 500 PHE A 84 -114.70 47.53 REMARK 500 GLU A 188 46.74 -77.91 REMARK 500 ALA A 189 93.54 170.89 REMARK 500 PRO A 196 41.30 -90.04 REMARK 500 ASN A 281 69.91 29.47 REMARK 500 ARG A 292 169.84 178.69 REMARK 500 SER A 322 -91.72 40.86 REMARK 500 ASN B 9 -167.77 -171.86 REMARK 500 SER B 59 -86.34 -146.88 REMARK 500 PHE B 84 -122.85 45.96 REMARK 500 ARG B 292 168.25 179.88 REMARK 500 TYR B 381 -159.24 -116.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 321 SER A 322 72.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1446 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1446 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2J9G RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BIOTIN CARBOXYLASE FROM E. COLI IN COMPLEX REMARK 900 WITH AMPPNP AND ADP REMARK 900 RELATED ID: 2VPQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BIOTIN CARBOXYLASE FROM S. AUREUS COMPLEXED REMARK 900 WITH AMPPNP REMARK 900 RELATED ID: 2VQD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BIOTIN CARBOXYLASE FROM PSEUDOMONAS AERUGINOSA REMARK 900 COMPLEXED WITH AMPCP REMARK 900 RELATED ID: 2VR1 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BIOTIN CARBOXYLASE FROM E. COLI IN COMPLEX REMARK 900 WITH ATP ANALOG, ADPCF2P. REMARK 999 REMARK 999 SEQUENCE REMARK 999 C-TERMINAL HIS-TAG PRESENT DBREF 2C00 A 1 449 UNP P37798 ACCC_PSEAE 1 449 DBREF 2C00 A 450 464 PDB 2C00 2C00 450 464 DBREF 2C00 B 1 449 UNP P37798 ACCC_PSEAE 1 449 DBREF 2C00 B 450 464 PDB 2C00 2C00 450 464 SEQRES 1 A 464 MET LEU GLU LYS VAL LEU ILE ALA ASN ARG GLY GLU ILE SEQRES 2 A 464 ALA LEU ARG ILE LEU ARG ALA CYS LYS GLU LEU GLY ILE SEQRES 3 A 464 LYS THR VAL ALA VAL HIS SER THR ALA ASP ARG GLU LEU SEQRES 4 A 464 MET HIS LEU SER LEU ALA ASP GLU SER VAL CYS ILE GLY SEQRES 5 A 464 PRO ALA PRO ALA THR GLN SER TYR LEU GLN ILE PRO ALA SEQRES 6 A 464 ILE ILE ALA ALA ALA GLU VAL THR GLY ALA THR ALA ILE SEQRES 7 A 464 HIS PRO GLY TYR GLY PHE LEU ALA GLU ASN ALA ASP PHE SEQRES 8 A 464 ALA GLU GLN ILE GLU ARG SER GLY PHE THR PHE VAL GLY SEQRES 9 A 464 PRO THR ALA GLU VAL ILE ARG LEU MET GLY ASP LYS VAL SEQRES 10 A 464 SER ALA LYS ASP ALA MET LYS ARG ALA GLY VAL PRO THR SEQRES 11 A 464 VAL PRO GLY SER ASP GLY PRO LEU PRO GLU ASP GLU GLU SEQRES 12 A 464 THR ALA LEU ALA ILE ALA ARG GLU VAL GLY TYR PRO VAL SEQRES 13 A 464 ILE ILE LYS ALA ALA GLY GLY GLY GLY GLY ARG GLY MET SEQRES 14 A 464 ARG VAL VAL TYR ASP GLU SER GLU LEU ILE LYS SER ALA SEQRES 15 A 464 LYS LEU THR ARG THR GLU ALA GLY ALA ALA PHE GLY ASN SEQRES 16 A 464 PRO MET VAL TYR LEU GLU LYS PHE LEU THR ASN PRO ARG SEQRES 17 A 464 HIS VAL GLU VAL GLN VAL LEU SER ASP GLY GLN GLY ASN SEQRES 18 A 464 ALA ILE HIS LEU GLY ASP ARG ASP CYS SER LEU GLN ARG SEQRES 19 A 464 ARG HIS GLN LYS VAL ILE GLU GLU ALA PRO ALA PRO GLY SEQRES 20 A 464 ILE ASP GLU LYS ALA ARG GLN GLU VAL PHE ALA ARG CYS SEQRES 21 A 464 VAL GLN ALA CYS ILE GLU ILE GLY TYR ARG GLY ALA GLY SEQRES 22 A 464 THR PHE GLU PHE LEU TYR GLU ASN GLY ARG PHE TYR PHE SEQRES 23 A 464 ILE GLU MET ASN THR ARG VAL GLN VAL GLU HIS PRO VAL SEQRES 24 A 464 SER GLU MET VAL THR GLY VAL ASP ILE VAL LYS GLU MET SEQRES 25 A 464 LEU ARG ILE ALA SER GLY GLU LYS LEU SER ILE ARG GLN SEQRES 26 A 464 GLU ASP VAL VAL ILE ARG GLY HIS ALA LEU GLU CYS ARG SEQRES 27 A 464 ILE ASN ALA GLU ASP PRO LYS THR PHE MET PRO SER PRO SEQRES 28 A 464 GLY LYS VAL LYS HIS PHE HIS ALA PRO GLY GLY ASN GLY SEQRES 29 A 464 VAL ARG VAL ASP SER HIS LEU TYR SER GLY TYR SER VAL SEQRES 30 A 464 PRO PRO ASN TYR ASP SER LEU VAL GLY LYS VAL ILE THR SEQRES 31 A 464 TYR GLY ALA ASP ARG ASP GLU ALA LEU ALA ARG MET ARG SEQRES 32 A 464 ASN ALA LEU ASP GLU LEU ILE VAL ASP GLY ILE LYS THR SEQRES 33 A 464 ASN THR GLU LEU HIS LYS ASP LEU VAL ARG ASP ALA ALA SEQRES 34 A 464 PHE CYS LYS GLY GLY VAL ASN ILE HIS TYR LEU GLU LYS SEQRES 35 A 464 LYS LEU GLY MET ASP LYS HIS GLY SER GLU ASN LEU TYR SEQRES 36 A 464 PHE GLN GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 464 MET LEU GLU LYS VAL LEU ILE ALA ASN ARG GLY GLU ILE SEQRES 2 B 464 ALA LEU ARG ILE LEU ARG ALA CYS LYS GLU LEU GLY ILE SEQRES 3 B 464 LYS THR VAL ALA VAL HIS SER THR ALA ASP ARG GLU LEU SEQRES 4 B 464 MET HIS LEU SER LEU ALA ASP GLU SER VAL CYS ILE GLY SEQRES 5 B 464 PRO ALA PRO ALA THR GLN SER TYR LEU GLN ILE PRO ALA SEQRES 6 B 464 ILE ILE ALA ALA ALA GLU VAL THR GLY ALA THR ALA ILE SEQRES 7 B 464 HIS PRO GLY TYR GLY PHE LEU ALA GLU ASN ALA ASP PHE SEQRES 8 B 464 ALA GLU GLN ILE GLU ARG SER GLY PHE THR PHE VAL GLY SEQRES 9 B 464 PRO THR ALA GLU VAL ILE ARG LEU MET GLY ASP LYS VAL SEQRES 10 B 464 SER ALA LYS ASP ALA MET LYS ARG ALA GLY VAL PRO THR SEQRES 11 B 464 VAL PRO GLY SER ASP GLY PRO LEU PRO GLU ASP GLU GLU SEQRES 12 B 464 THR ALA LEU ALA ILE ALA ARG GLU VAL GLY TYR PRO VAL SEQRES 13 B 464 ILE ILE LYS ALA ALA GLY GLY GLY GLY GLY ARG GLY MET SEQRES 14 B 464 ARG VAL VAL TYR ASP GLU SER GLU LEU ILE LYS SER ALA SEQRES 15 B 464 LYS LEU THR ARG THR GLU ALA GLY ALA ALA PHE GLY ASN SEQRES 16 B 464 PRO MET VAL TYR LEU GLU LYS PHE LEU THR ASN PRO ARG SEQRES 17 B 464 HIS VAL GLU VAL GLN VAL LEU SER ASP GLY GLN GLY ASN SEQRES 18 B 464 ALA ILE HIS LEU GLY ASP ARG ASP CYS SER LEU GLN ARG SEQRES 19 B 464 ARG HIS GLN LYS VAL ILE GLU GLU ALA PRO ALA PRO GLY SEQRES 20 B 464 ILE ASP GLU LYS ALA ARG GLN GLU VAL PHE ALA ARG CYS SEQRES 21 B 464 VAL GLN ALA CYS ILE GLU ILE GLY TYR ARG GLY ALA GLY SEQRES 22 B 464 THR PHE GLU PHE LEU TYR GLU ASN GLY ARG PHE TYR PHE SEQRES 23 B 464 ILE GLU MET ASN THR ARG VAL GLN VAL GLU HIS PRO VAL SEQRES 24 B 464 SER GLU MET VAL THR GLY VAL ASP ILE VAL LYS GLU MET SEQRES 25 B 464 LEU ARG ILE ALA SER GLY GLU LYS LEU SER ILE ARG GLN SEQRES 26 B 464 GLU ASP VAL VAL ILE ARG GLY HIS ALA LEU GLU CYS ARG SEQRES 27 B 464 ILE ASN ALA GLU ASP PRO LYS THR PHE MET PRO SER PRO SEQRES 28 B 464 GLY LYS VAL LYS HIS PHE HIS ALA PRO GLY GLY ASN GLY SEQRES 29 B 464 VAL ARG VAL ASP SER HIS LEU TYR SER GLY TYR SER VAL SEQRES 30 B 464 PRO PRO ASN TYR ASP SER LEU VAL GLY LYS VAL ILE THR SEQRES 31 B 464 TYR GLY ALA ASP ARG ASP GLU ALA LEU ALA ARG MET ARG SEQRES 32 B 464 ASN ALA LEU ASP GLU LEU ILE VAL ASP GLY ILE LYS THR SEQRES 33 B 464 ASN THR GLU LEU HIS LYS ASP LEU VAL ARG ASP ALA ALA SEQRES 34 B 464 PHE CYS LYS GLY GLY VAL ASN ILE HIS TYR LEU GLU LYS SEQRES 35 B 464 LYS LEU GLY MET ASP LYS HIS GLY SER GLU ASN LEU TYR SEQRES 36 B 464 PHE GLN GLY HIS HIS HIS HIS HIS HIS HET SO4 A1446 5 HET SO4 B1446 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 HOH *488(H2 O) HELIX 1 1 ARG A 10 LEU A 24 1 15 HELIX 2 2 ALA A 35 ARG A 37 5 3 HELIX 3 3 HIS A 41 ALA A 45 5 5 HELIX 4 4 PRO A 55 SER A 59 5 5 HELIX 5 5 GLN A 62 GLY A 74 1 13 HELIX 6 6 ASN A 88 GLY A 99 1 12 HELIX 7 7 THR A 106 ASP A 115 1 10 HELIX 8 8 ASP A 115 ALA A 126 1 12 HELIX 9 9 ASP A 141 GLY A 153 1 13 HELIX 10 10 ASP A 174 SER A 176 5 3 HELIX 11 11 GLU A 177 GLU A 188 1 12 HELIX 12 12 ASP A 249 GLY A 268 1 20 HELIX 13 13 GLU A 296 GLY A 305 1 10 HELIX 14 14 ASP A 307 SER A 317 1 11 HELIX 15 15 ARG A 324 VAL A 328 5 5 HELIX 16 16 ASP A 394 LEU A 409 1 16 HELIX 17 17 ASN A 417 VAL A 425 1 9 HELIX 18 18 ASP A 427 GLY A 433 1 7 HELIX 19 19 HIS A 438 GLY A 445 1 8 HELIX 20 20 ARG B 10 LEU B 24 1 15 HELIX 21 21 ALA B 35 ARG B 37 5 3 HELIX 22 22 LEU B 39 ALA B 45 5 7 HELIX 23 23 PRO B 55 SER B 59 5 5 HELIX 24 24 GLN B 62 GLY B 74 1 13 HELIX 25 25 ASN B 88 SER B 98 1 11 HELIX 26 26 THR B 106 ASP B 115 1 10 HELIX 27 27 ASP B 115 GLY B 127 1 13 HELIX 28 28 ASP B 141 GLY B 153 1 13 HELIX 29 29 GLU B 177 GLY B 190 1 14 HELIX 30 30 ASP B 249 GLY B 268 1 20 HELIX 31 31 GLU B 296 GLY B 305 1 10 HELIX 32 32 ASP B 307 SER B 317 1 11 HELIX 33 33 ARG B 324 VAL B 328 5 5 HELIX 34 34 ASP B 394 LEU B 409 1 16 HELIX 35 35 ASN B 417 VAL B 425 1 9 HELIX 36 36 ASP B 427 GLY B 433 1 7 HELIX 37 37 HIS B 438 LEU B 444 1 7 SHEET 1 AA 5 GLU A 47 GLY A 52 0 SHEET 2 AA 5 LYS A 27 SER A 33 1 O THR A 28 N GLU A 47 SHEET 3 AA 5 LYS A 4 ILE A 7 1 O VAL A 5 N VAL A 29 SHEET 4 AA 5 ALA A 77 HIS A 79 1 O ALA A 77 N LEU A 6 SHEET 5 AA 5 THR A 101 PHE A 102 1 O THR A 101 N ILE A 78 SHEET 1 AB 3 ARG A 170 VAL A 172 0 SHEET 2 AB 3 VAL A 156 ALA A 160 -1 O VAL A 156 N VAL A 172 SHEET 3 AB 3 VAL A 198 LYS A 202 -1 O TYR A 199 N LYS A 159 SHEET 1 AC 4 ALA A 222 ASP A 229 0 SHEET 2 AC 4 ARG A 208 ASP A 217 -1 O GLU A 211 N ARG A 228 SHEET 3 AC 4 ARG A 270 GLU A 280 -1 O GLY A 271 N SER A 216 SHEET 4 AC 4 ARG A 283 ASN A 290 -1 O ARG A 283 N GLU A 280 SHEET 1 AD 2 GLN A 233 ARG A 234 0 SHEET 2 AD 2 GLN A 237 LYS A 238 -1 O GLN A 237 N ARG A 234 SHEET 1 AE 4 ILE A 240 ALA A 243 0 SHEET 2 AE 4 HIS A 333 ASN A 340 -1 O ALA A 334 N ALA A 243 SHEET 3 AE 4 LEU A 384 GLY A 392 -1 N VAL A 385 O ILE A 339 SHEET 4 AE 4 VAL A 365 SER A 369 -1 O ARG A 366 N ILE A 389 SHEET 1 AF 2 GLY A 352 LYS A 353 0 SHEET 2 AF 2 SER A 376 VAL A 377 -1 O VAL A 377 N GLY A 352 SHEET 1 AG 2 HIS A 356 HIS A 358 0 SHEET 2 AG 2 ILE A 410 ASP A 412 -1 O ILE A 410 N HIS A 358 SHEET 1 BA 5 GLU B 47 GLY B 52 0 SHEET 2 BA 5 LYS B 27 SER B 33 1 O THR B 28 N GLU B 47 SHEET 3 BA 5 LYS B 4 ILE B 7 1 O VAL B 5 N VAL B 29 SHEET 4 BA 5 ALA B 77 HIS B 79 1 O ALA B 77 N LEU B 6 SHEET 5 BA 5 THR B 101 PHE B 102 1 O THR B 101 N ILE B 78 SHEET 1 BB 3 MET B 169 VAL B 172 0 SHEET 2 BB 3 VAL B 156 ALA B 160 -1 O VAL B 156 N VAL B 172 SHEET 3 BB 3 VAL B 198 LYS B 202 -1 O TYR B 199 N LYS B 159 SHEET 1 BC 8 ARG B 283 ASN B 290 0 SHEET 2 BC 8 ARG B 270 GLU B 280 -1 O THR B 274 N ASN B 290 SHEET 3 BC 8 ARG B 208 ASP B 217 -1 O ARG B 208 N TYR B 279 SHEET 4 BC 8 ALA B 222 ARG B 234 -1 O ILE B 223 N LEU B 215 SHEET 5 BC 8 GLN B 237 ALA B 243 -1 O GLN B 237 N ARG B 234 SHEET 6 BC 8 HIS B 333 ASN B 340 -1 O ALA B 334 N ALA B 243 SHEET 7 BC 8 LEU B 384 GLY B 392 -1 N VAL B 385 O ILE B 339 SHEET 8 BC 8 VAL B 365 SER B 369 -1 O ARG B 366 N ILE B 389 SHEET 1 BD 2 GLY B 352 LYS B 353 0 SHEET 2 BD 2 SER B 376 VAL B 377 -1 O VAL B 377 N GLY B 352 SHEET 1 BE 2 HIS B 356 HIS B 358 0 SHEET 2 BE 2 ILE B 410 ASP B 412 -1 O ILE B 410 N HIS B 358 CISPEP 1 ASP A 135 GLY A 136 0 -7.61 CISPEP 2 TYR A 154 PRO A 155 0 -5.99 CISPEP 3 ALA A 189 GLY A 190 0 5.34 CISPEP 4 ALA A 243 PRO A 244 0 -9.17 CISPEP 5 TYR B 154 PRO B 155 0 -1.43 CISPEP 6 ALA B 243 PRO B 244 0 -11.43 SITE 1 AC1 9 LYS A 238 ARG A 292 GLN A 294 VAL A 295 SITE 2 AC1 9 GLU A 296 ARG A 338 HOH A2185 HOH A2310 SITE 3 AC1 9 HOH A2311 SITE 1 AC2 7 LYS B 238 ARG B 292 GLN B 294 VAL B 295 SITE 2 AC2 7 GLU B 296 ARG B 338 HOH B2177 CRYST1 160.402 160.402 146.764 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006234 0.003599 0.000000 0.00000 SCALE2 0.000000 0.007199 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006814 0.00000