data_2C08 # _entry.id 2C08 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.308 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2C08 PDBE EBI-25448 WWPDB D_1290025448 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2C08 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2005-08-26 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Gallop, J.L.' 1 ? 'Kent, H.M.' 2 ? 'Mcmahon, H.T.' 3 ? 'Evans, P.R.' 4 ? # _citation.id primary _citation.title 'Mechanism of Endophilin N-Bar Domain-Mediated Membrane Curvature.' _citation.journal_abbrev 'Embo J.' _citation.journal_volume 25 _citation.page_first 2898 _citation.page_last ? _citation.year 2006 _citation.journal_id_ASTM EMJODG _citation.country UK _citation.journal_id_ISSN 0261-4189 _citation.journal_id_CSD 0897 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16763559 _citation.pdbx_database_id_DOI 10.1038/SJ.EMBOJ.7601174 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gallop, J.L.' 1 ? primary 'Jao, C.C.' 2 ? primary 'Kent, H.M.' 3 ? primary 'Butler, P.J.' 4 ? primary 'Evans, P.R.' 5 ? primary 'Langen, R.' 6 ? primary 'Mcmahon, H.T.' 7 ? # _cell.entry_id 2C08 _cell.length_a 126.578 _cell.length_b 126.578 _cell.length_c 101.226 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2C08 _symmetry.space_group_name_H-M 'I 41' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 80 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'SH3-CONTAINING GRB2-LIKE PROTEIN 2' _entity.formula_weight 24025.070 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec 2.3.1.- _entity.pdbx_mutation ? _entity.pdbx_fragment 'BAR DOMAIN, RESIDUES 1-143' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'ENDOPHILIN A1, SH3 DOMAIN PROTEIN 2A, SH3P4' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;EGTKLDDDFKE(MSE)ERKVDVTSRAV(MSE)EI(MSE)TKTIEYLQPNPASRAKPQAEALLAEA(MSE)LKFGRELGDD CNFGPALGEVGEA(MSE)RELSEVKDSLD(MSE)EVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFDYKKKRQGKIP DEELRQALEKFDESKEIAESS(MSE)FNLLE(MSE)DIEQVSQLSALVQAQLEYHKQAVQILQQVTVRLEERIRQA ; _entity_poly.pdbx_seq_one_letter_code_can ;EGTKLDDDFKEMERKVDVTSRAVMEIMTKTIEYLQPNPASRAKPQAEALLAEAMLKFGRELGDDCNFGPALGEVGEAMRE LSEVKDSLDMEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFDYKKKRQGKIPDEELRQALEKFDESKEIAESSMFN LLEMDIEQVSQLSALVQAQLEYHKQAVQILQQVTVRLEERIRQA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 GLY n 1 3 THR n 1 4 LYS n 1 5 LEU n 1 6 ASP n 1 7 ASP n 1 8 ASP n 1 9 PHE n 1 10 LYS n 1 11 GLU n 1 12 MSE n 1 13 GLU n 1 14 ARG n 1 15 LYS n 1 16 VAL n 1 17 ASP n 1 18 VAL n 1 19 THR n 1 20 SER n 1 21 ARG n 1 22 ALA n 1 23 VAL n 1 24 MSE n 1 25 GLU n 1 26 ILE n 1 27 MSE n 1 28 THR n 1 29 LYS n 1 30 THR n 1 31 ILE n 1 32 GLU n 1 33 TYR n 1 34 LEU n 1 35 GLN n 1 36 PRO n 1 37 ASN n 1 38 PRO n 1 39 ALA n 1 40 SER n 1 41 ARG n 1 42 ALA n 1 43 LYS n 1 44 PRO n 1 45 GLN n 1 46 ALA n 1 47 GLU n 1 48 ALA n 1 49 LEU n 1 50 LEU n 1 51 ALA n 1 52 GLU n 1 53 ALA n 1 54 MSE n 1 55 LEU n 1 56 LYS n 1 57 PHE n 1 58 GLY n 1 59 ARG n 1 60 GLU n 1 61 LEU n 1 62 GLY n 1 63 ASP n 1 64 ASP n 1 65 CYS n 1 66 ASN n 1 67 PHE n 1 68 GLY n 1 69 PRO n 1 70 ALA n 1 71 LEU n 1 72 GLY n 1 73 GLU n 1 74 VAL n 1 75 GLY n 1 76 GLU n 1 77 ALA n 1 78 MSE n 1 79 ARG n 1 80 GLU n 1 81 LEU n 1 82 SER n 1 83 GLU n 1 84 VAL n 1 85 LYS n 1 86 ASP n 1 87 SER n 1 88 LEU n 1 89 ASP n 1 90 MSE n 1 91 GLU n 1 92 VAL n 1 93 LYS n 1 94 GLN n 1 95 ASN n 1 96 PHE n 1 97 ILE n 1 98 ASP n 1 99 PRO n 1 100 LEU n 1 101 GLN n 1 102 ASN n 1 103 LEU n 1 104 HIS n 1 105 ASP n 1 106 LYS n 1 107 ASP n 1 108 LEU n 1 109 ARG n 1 110 GLU n 1 111 ILE n 1 112 GLN n 1 113 HIS n 1 114 HIS n 1 115 LEU n 1 116 LYS n 1 117 LYS n 1 118 LEU n 1 119 GLU n 1 120 GLY n 1 121 ARG n 1 122 ARG n 1 123 LEU n 1 124 ASP n 1 125 PHE n 1 126 ASP n 1 127 TYR n 1 128 LYS n 1 129 LYS n 1 130 LYS n 1 131 ARG n 1 132 GLN n 1 133 GLY n 1 134 LYS n 1 135 ILE n 1 136 PRO n 1 137 ASP n 1 138 GLU n 1 139 GLU n 1 140 LEU n 1 141 ARG n 1 142 GLN n 1 143 ALA n 1 144 LEU n 1 145 GLU n 1 146 LYS n 1 147 PHE n 1 148 ASP n 1 149 GLU n 1 150 SER n 1 151 LYS n 1 152 GLU n 1 153 ILE n 1 154 ALA n 1 155 GLU n 1 156 SER n 1 157 SER n 1 158 MSE n 1 159 PHE n 1 160 ASN n 1 161 LEU n 1 162 LEU n 1 163 GLU n 1 164 MSE n 1 165 ASP n 1 166 ILE n 1 167 GLU n 1 168 GLN n 1 169 VAL n 1 170 SER n 1 171 GLN n 1 172 LEU n 1 173 SER n 1 174 ALA n 1 175 LEU n 1 176 VAL n 1 177 GLN n 1 178 ALA n 1 179 GLN n 1 180 LEU n 1 181 GLU n 1 182 TYR n 1 183 HIS n 1 184 LYS n 1 185 GLN n 1 186 ALA n 1 187 VAL n 1 188 GLN n 1 189 ILE n 1 190 LEU n 1 191 GLN n 1 192 GLN n 1 193 VAL n 1 194 THR n 1 195 VAL n 1 196 ARG n 1 197 LEU n 1 198 GLU n 1 199 GLU n 1 200 ARG n 1 201 ILE n 1 202 ARG n 1 203 GLN n 1 204 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name RAT _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'RATTUS NORVEGICUS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10116 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 2C08 1 ? ? 2C08 ? 2 UNP SH3G2_RAT 1 ? ? O35179 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2C08 A 1 ? 43 ? 2C08 25 ? 67 ? 25 67 2 1 2C08 A 44 ? 61 ? 2C08 87 ? 104 ? 87 104 3 2 2C08 A 62 ? 204 ? O35179 1 ? 143 ? 105 247 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2C08 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 8.76 _exptl_crystal.density_percent_sol 85.85 _exptl_crystal.description ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.00 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '25% BUTANE-1,4-DIOL, 100MM TRIS PH 8.0,4DEGC, CRYOPROTECTED IN 40% BUTANE-1,4-DIOL, 25% ETHYLENE GLYCOL' # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2004-11-05 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.98 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID29' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID29 _diffrn_source.pdbx_wavelength 0.98 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2C08 _reflns.observed_criterion_sigma_I 6.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 44.000 _reflns.d_resolution_high 2.900 _reflns.number_obs 393336 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.16000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 19.8000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 22.100 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.90 _reflns_shell.d_res_low 3.06 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.95000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.600 _reflns_shell.pdbx_redundancy 22.30 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2C08 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 16875 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 89.44 _refine.ls_d_res_high 2.90 _refine.ls_percent_reflns_obs 99.9 _refine.ls_R_factor_obs 0.280 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.279 _refine.ls_R_factor_R_free 0.295 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 904 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.881 _refine.correlation_coeff_Fo_to_Fc_free 0.861 _refine.B_iso_mean 59.79 _refine.aniso_B[1][1] 0.32000 _refine.aniso_B[2][2] 0.32000 _refine.aniso_B[3][3] -0.65000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOODWITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.330 _refine.pdbx_overall_ESU_R_Free 0.273 _refine.overall_SU_ML 0.228 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 12.411 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1653 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1653 _refine_hist.d_res_high 2.90 _refine_hist.d_res_low 89.44 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.020 0.023 ? 1820 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 0.956 1.985 ? 2234 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.461 5.000 ? 202 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.810 25.556 ? 90 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 17.836 15.000 ? 346 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 14.325 15.000 ? 13 'X-RAY DIFFRACTION' ? r_chiral_restr 0.072 0.200 ? 245 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.003 0.020 ? 1242 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.235 0.200 ? 708 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.293 0.200 ? 1169 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.128 0.200 ? 23 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.172 0.200 ? 53 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.080 0.200 ? 4 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.595 1.500 ? 1193 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 0.696 2.000 ? 1629 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 1.239 3.000 ? 675 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 1.833 4.500 ? 605 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.90 _refine_ls_shell.d_res_low 2.98 _refine_ls_shell.number_reflns_R_work 1235 _refine_ls_shell.R_factor_R_work 0.3610 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.3380 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 65 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2C08 _struct.title 'Rat endophilin A1 BAR domain' _struct.pdbx_descriptor 'SH3-CONTAINING GRB2-LIKE PROTEIN 2 (E.C.2.3.1.-)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2C08 _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;ENDOCYTOSIS, BAR DOMAIN, MEMBRANE CURVATURE, SH3 DOMAIN, ACYLTRANSFERASE, COILED COIL, LIPID-BINDING, MULTIGENE FAMILY, PHOSPHORYLATION, TRANSFERASE ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 6 ? GLN A 35 ? ASP A 30 GLN A 59 1 ? 30 HELX_P HELX_P2 2 ASN A 37 ? ARG A 41 ? ASN A 61 ARG A 65 5 ? 5 HELX_P HELX_P3 3 GLN A 45 ? GLY A 62 ? GLN A 88 GLY A 105 1 ? 18 HELX_P HELX_P4 4 ASN A 66 ? PHE A 96 ? ASN A 109 PHE A 139 1 ? 31 HELX_P HELX_P5 5 PHE A 96 ? ARG A 131 ? PHE A 139 ARG A 174 1 ? 36 HELX_P HELX_P6 6 PRO A 136 ? GLU A 163 ? PRO A 179 GLU A 206 1 ? 28 HELX_P HELX_P7 7 MSE A 164 ? GLN A 203 ? MSE A 207 GLN A 246 1 ? 40 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A GLU 11 C ? ? ? 1_555 A MSE 12 N ? ? A GLU 35 A MSE 36 1_555 ? ? ? ? ? ? ? 1.327 ? covale2 covale both ? A MSE 12 C ? ? ? 1_555 A GLU 13 N ? ? A MSE 36 A GLU 37 1_555 ? ? ? ? ? ? ? 1.334 ? covale3 covale both ? A VAL 23 C ? ? ? 1_555 A MSE 24 N ? ? A VAL 47 A MSE 48 1_555 ? ? ? ? ? ? ? 1.334 ? covale4 covale both ? A MSE 24 C ? ? ? 1_555 A GLU 25 N ? ? A MSE 48 A GLU 49 1_555 ? ? ? ? ? ? ? 1.332 ? covale5 covale both ? A ILE 26 C ? ? ? 1_555 A MSE 27 N ? ? A ILE 50 A MSE 51 1_555 ? ? ? ? ? ? ? 1.329 ? covale6 covale both ? A MSE 27 C ? ? ? 1_555 A THR 28 N ? ? A MSE 51 A THR 52 1_555 ? ? ? ? ? ? ? 1.335 ? covale7 covale both ? A ALA 53 C ? ? ? 1_555 A MSE 54 N ? ? A ALA 96 A MSE 97 1_555 ? ? ? ? ? ? ? 1.331 ? covale8 covale both ? A MSE 54 C ? ? ? 1_555 A LEU 55 N ? ? A MSE 97 A LEU 98 1_555 ? ? ? ? ? ? ? 1.330 ? covale9 covale both ? A ALA 77 C ? ? ? 1_555 A MSE 78 N ? ? A ALA 120 A MSE 121 1_555 ? ? ? ? ? ? ? 1.336 ? covale10 covale both ? A MSE 78 C ? ? ? 1_555 A ARG 79 N ? ? A MSE 121 A ARG 122 1_555 ? ? ? ? ? ? ? 1.333 ? covale11 covale both ? A ASP 89 C ? ? ? 1_555 A MSE 90 N ? ? A ASP 132 A MSE 133 1_555 ? ? ? ? ? ? ? 1.335 ? covale12 covale both ? A MSE 90 C ? ? ? 1_555 A GLU 91 N ? ? A MSE 133 A GLU 134 1_555 ? ? ? ? ? ? ? 1.330 ? covale13 covale both ? A SER 157 C ? ? ? 1_555 A MSE 158 N ? ? A SER 200 A MSE 201 1_555 ? ? ? ? ? ? ? 1.330 ? covale14 covale both ? A MSE 158 C ? ? ? 1_555 A PHE 159 N ? ? A MSE 201 A PHE 202 1_555 ? ? ? ? ? ? ? 1.330 ? covale15 covale both ? A GLU 163 C ? ? ? 1_555 A MSE 164 N ? ? A GLU 206 A MSE 207 1_555 ? ? ? ? ? ? ? 1.338 ? covale16 covale both ? A MSE 164 C ? ? ? 1_555 A ASP 165 N ? ? A MSE 207 A ASP 208 1_555 ? ? ? ? ? ? ? 1.329 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 2C08 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2C08 _atom_sites.fract_transf_matrix[1][1] 0.007900 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007900 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009879 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 25 25 GLU GLU A . n A 1 2 GLY 2 26 26 GLY GLY A . n A 1 3 THR 3 27 27 THR THR A . n A 1 4 LYS 4 28 28 LYS LYS A . n A 1 5 LEU 5 29 29 LEU LEU A . n A 1 6 ASP 6 30 30 ASP ASP A . n A 1 7 ASP 7 31 31 ASP ASP A . n A 1 8 ASP 8 32 32 ASP ASP A . n A 1 9 PHE 9 33 33 PHE PHE A . n A 1 10 LYS 10 34 34 LYS LYS A . n A 1 11 GLU 11 35 35 GLU GLU A . n A 1 12 MSE 12 36 36 MSE MSE A . n A 1 13 GLU 13 37 37 GLU GLU A . n A 1 14 ARG 14 38 38 ARG ARG A . n A 1 15 LYS 15 39 39 LYS LYS A . n A 1 16 VAL 16 40 40 VAL VAL A . n A 1 17 ASP 17 41 41 ASP ASP A . n A 1 18 VAL 18 42 42 VAL VAL A . n A 1 19 THR 19 43 43 THR THR A . n A 1 20 SER 20 44 44 SER SER A . n A 1 21 ARG 21 45 45 ARG ARG A . n A 1 22 ALA 22 46 46 ALA ALA A . n A 1 23 VAL 23 47 47 VAL VAL A . n A 1 24 MSE 24 48 48 MSE MSE A . n A 1 25 GLU 25 49 49 GLU GLU A . n A 1 26 ILE 26 50 50 ILE ILE A . n A 1 27 MSE 27 51 51 MSE MSE A . n A 1 28 THR 28 52 52 THR THR A . n A 1 29 LYS 29 53 53 LYS LYS A . n A 1 30 THR 30 54 54 THR THR A . n A 1 31 ILE 31 55 55 ILE ILE A . n A 1 32 GLU 32 56 56 GLU GLU A . n A 1 33 TYR 33 57 57 TYR TYR A . n A 1 34 LEU 34 58 58 LEU LEU A . n A 1 35 GLN 35 59 59 GLN GLN A . n A 1 36 PRO 36 60 60 PRO PRO A . n A 1 37 ASN 37 61 61 ASN ASN A . n A 1 38 PRO 38 62 62 PRO PRO A . n A 1 39 ALA 39 63 63 ALA ALA A . n A 1 40 SER 40 64 64 SER SER A . n A 1 41 ARG 41 65 65 ARG ARG A . n A 1 42 ALA 42 66 66 ALA ALA A . n A 1 43 LYS 43 67 67 LYS LYS A . n A 1 44 PRO 44 87 87 PRO PRO A . n A 1 45 GLN 45 88 88 GLN GLN A . n A 1 46 ALA 46 89 89 ALA ALA A . n A 1 47 GLU 47 90 90 GLU GLU A . n A 1 48 ALA 48 91 91 ALA ALA A . n A 1 49 LEU 49 92 92 LEU LEU A . n A 1 50 LEU 50 93 93 LEU LEU A . n A 1 51 ALA 51 94 94 ALA ALA A . n A 1 52 GLU 52 95 95 GLU GLU A . n A 1 53 ALA 53 96 96 ALA ALA A . n A 1 54 MSE 54 97 97 MSE MSE A . n A 1 55 LEU 55 98 98 LEU LEU A . n A 1 56 LYS 56 99 99 LYS LYS A . n A 1 57 PHE 57 100 100 PHE PHE A . n A 1 58 GLY 58 101 101 GLY GLY A . n A 1 59 ARG 59 102 102 ARG ARG A . n A 1 60 GLU 60 103 103 GLU GLU A . n A 1 61 LEU 61 104 104 LEU LEU A . n A 1 62 GLY 62 105 105 GLY GLY A . n A 1 63 ASP 63 106 106 ASP ASP A . n A 1 64 ASP 64 107 107 ASP ASP A . n A 1 65 CYS 65 108 108 CYS CYS A . n A 1 66 ASN 66 109 109 ASN ASN A . n A 1 67 PHE 67 110 110 PHE PHE A . n A 1 68 GLY 68 111 111 GLY GLY A . n A 1 69 PRO 69 112 112 PRO PRO A . n A 1 70 ALA 70 113 113 ALA ALA A . n A 1 71 LEU 71 114 114 LEU LEU A . n A 1 72 GLY 72 115 115 GLY GLY A . n A 1 73 GLU 73 116 116 GLU GLU A . n A 1 74 VAL 74 117 117 VAL VAL A . n A 1 75 GLY 75 118 118 GLY GLY A . n A 1 76 GLU 76 119 119 GLU GLU A . n A 1 77 ALA 77 120 120 ALA ALA A . n A 1 78 MSE 78 121 121 MSE MSE A . n A 1 79 ARG 79 122 122 ARG ARG A . n A 1 80 GLU 80 123 123 GLU GLU A . n A 1 81 LEU 81 124 124 LEU LEU A . n A 1 82 SER 82 125 125 SER SER A . n A 1 83 GLU 83 126 126 GLU GLU A . n A 1 84 VAL 84 127 127 VAL VAL A . n A 1 85 LYS 85 128 128 LYS LYS A . n A 1 86 ASP 86 129 129 ASP ASP A . n A 1 87 SER 87 130 130 SER SER A . n A 1 88 LEU 88 131 131 LEU LEU A . n A 1 89 ASP 89 132 132 ASP ASP A . n A 1 90 MSE 90 133 133 MSE MSE A . n A 1 91 GLU 91 134 134 GLU GLU A . n A 1 92 VAL 92 135 135 VAL VAL A . n A 1 93 LYS 93 136 136 LYS LYS A . n A 1 94 GLN 94 137 137 GLN GLN A . n A 1 95 ASN 95 138 138 ASN ASN A . n A 1 96 PHE 96 139 139 PHE PHE A . n A 1 97 ILE 97 140 140 ILE ILE A . n A 1 98 ASP 98 141 141 ASP ASP A . n A 1 99 PRO 99 142 142 PRO PRO A . n A 1 100 LEU 100 143 143 LEU LEU A . n A 1 101 GLN 101 144 144 GLN GLN A . n A 1 102 ASN 102 145 145 ASN ASN A . n A 1 103 LEU 103 146 146 LEU LEU A . n A 1 104 HIS 104 147 147 HIS HIS A . n A 1 105 ASP 105 148 148 ASP ASP A . n A 1 106 LYS 106 149 149 LYS LYS A . n A 1 107 ASP 107 150 150 ASP ASP A . n A 1 108 LEU 108 151 151 LEU LEU A . n A 1 109 ARG 109 152 152 ARG ARG A . n A 1 110 GLU 110 153 153 GLU GLU A . n A 1 111 ILE 111 154 154 ILE ILE A . n A 1 112 GLN 112 155 155 GLN GLN A . n A 1 113 HIS 113 156 156 HIS HIS A . n A 1 114 HIS 114 157 157 HIS HIS A . n A 1 115 LEU 115 158 158 LEU LEU A . n A 1 116 LYS 116 159 159 LYS LYS A . n A 1 117 LYS 117 160 160 LYS LYS A . n A 1 118 LEU 118 161 161 LEU LEU A . n A 1 119 GLU 119 162 162 GLU GLU A . n A 1 120 GLY 120 163 163 GLY GLY A . n A 1 121 ARG 121 164 164 ARG ARG A . n A 1 122 ARG 122 165 165 ARG ARG A . n A 1 123 LEU 123 166 166 LEU LEU A . n A 1 124 ASP 124 167 167 ASP ASP A . n A 1 125 PHE 125 168 168 PHE PHE A . n A 1 126 ASP 126 169 169 ASP ASP A . n A 1 127 TYR 127 170 170 TYR TYR A . n A 1 128 LYS 128 171 171 LYS LYS A . n A 1 129 LYS 129 172 172 LYS LYS A . n A 1 130 LYS 130 173 173 LYS LYS A . n A 1 131 ARG 131 174 174 ARG ARG A . n A 1 132 GLN 132 175 175 GLN GLN A . n A 1 133 GLY 133 176 176 GLY GLY A . n A 1 134 LYS 134 177 177 LYS LYS A . n A 1 135 ILE 135 178 178 ILE ILE A . n A 1 136 PRO 136 179 179 PRO PRO A . n A 1 137 ASP 137 180 180 ASP ASP A . n A 1 138 GLU 138 181 181 GLU GLU A . n A 1 139 GLU 139 182 182 GLU GLU A . n A 1 140 LEU 140 183 183 LEU LEU A . n A 1 141 ARG 141 184 184 ARG ARG A . n A 1 142 GLN 142 185 185 GLN GLN A . n A 1 143 ALA 143 186 186 ALA ALA A . n A 1 144 LEU 144 187 187 LEU LEU A . n A 1 145 GLU 145 188 188 GLU GLU A . n A 1 146 LYS 146 189 189 LYS LYS A . n A 1 147 PHE 147 190 190 PHE PHE A . n A 1 148 ASP 148 191 191 ASP ASP A . n A 1 149 GLU 149 192 192 GLU GLU A . n A 1 150 SER 150 193 193 SER SER A . n A 1 151 LYS 151 194 194 LYS LYS A . n A 1 152 GLU 152 195 195 GLU GLU A . n A 1 153 ILE 153 196 196 ILE ILE A . n A 1 154 ALA 154 197 197 ALA ALA A . n A 1 155 GLU 155 198 198 GLU GLU A . n A 1 156 SER 156 199 199 SER SER A . n A 1 157 SER 157 200 200 SER SER A . n A 1 158 MSE 158 201 201 MSE MSE A . n A 1 159 PHE 159 202 202 PHE PHE A . n A 1 160 ASN 160 203 203 ASN ASN A . n A 1 161 LEU 161 204 204 LEU LEU A . n A 1 162 LEU 162 205 205 LEU LEU A . n A 1 163 GLU 163 206 206 GLU GLU A . n A 1 164 MSE 164 207 207 MSE MSE A . n A 1 165 ASP 165 208 208 ASP ASP A . n A 1 166 ILE 166 209 209 ILE ILE A . n A 1 167 GLU 167 210 210 GLU GLU A . n A 1 168 GLN 168 211 211 GLN GLN A . n A 1 169 VAL 169 212 212 VAL VAL A . n A 1 170 SER 170 213 213 SER SER A . n A 1 171 GLN 171 214 214 GLN GLN A . n A 1 172 LEU 172 215 215 LEU LEU A . n A 1 173 SER 173 216 216 SER SER A . n A 1 174 ALA 174 217 217 ALA ALA A . n A 1 175 LEU 175 218 218 LEU LEU A . n A 1 176 VAL 176 219 219 VAL VAL A . n A 1 177 GLN 177 220 220 GLN GLN A . n A 1 178 ALA 178 221 221 ALA ALA A . n A 1 179 GLN 179 222 222 GLN GLN A . n A 1 180 LEU 180 223 223 LEU LEU A . n A 1 181 GLU 181 224 224 GLU GLU A . n A 1 182 TYR 182 225 225 TYR TYR A . n A 1 183 HIS 183 226 226 HIS HIS A . n A 1 184 LYS 184 227 227 LYS LYS A . n A 1 185 GLN 185 228 228 GLN GLN A . n A 1 186 ALA 186 229 229 ALA ALA A . n A 1 187 VAL 187 230 230 VAL VAL A . n A 1 188 GLN 188 231 231 GLN GLN A . n A 1 189 ILE 189 232 232 ILE ILE A . n A 1 190 LEU 190 233 233 LEU LEU A . n A 1 191 GLN 191 234 234 GLN GLN A . n A 1 192 GLN 192 235 235 GLN GLN A . n A 1 193 VAL 193 236 236 VAL VAL A . n A 1 194 THR 194 237 237 THR THR A . n A 1 195 VAL 195 238 238 VAL VAL A . n A 1 196 ARG 196 239 239 ARG ARG A . n A 1 197 LEU 197 240 240 LEU LEU A . n A 1 198 GLU 198 241 241 GLU GLU A . n A 1 199 GLU 199 242 242 GLU GLU A . n A 1 200 ARG 200 243 243 ARG ARG A . n A 1 201 ILE 201 244 244 ILE ILE A . n A 1 202 ARG 202 245 245 ARG ARG A . n A 1 203 GLN 203 246 246 GLN GLN A . n A 1 204 ALA 204 247 247 ALA ALA A . n # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 12 A MSE 36 ? MET SELENOMETHIONINE 2 A MSE 24 A MSE 48 ? MET SELENOMETHIONINE 3 A MSE 27 A MSE 51 ? MET SELENOMETHIONINE 4 A MSE 54 A MSE 97 ? MET SELENOMETHIONINE 5 A MSE 78 A MSE 121 ? MET SELENOMETHIONINE 6 A MSE 90 A MSE 133 ? MET SELENOMETHIONINE 7 A MSE 158 A MSE 201 ? MET SELENOMETHIONINE 8 A MSE 164 A MSE 207 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 6_665 -x+1,-y+1,z -1.0000000000 0.0000000000 0.0000000000 126.5780000000 0.0000000000 -1.0000000000 0.0000000000 126.5780000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-06-14 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2019-05-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Experimental preparation' 6 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' exptl_crystal_grow 2 4 'Structure model' pdbx_database_proc 3 4 'Structure model' pdbx_database_status 4 4 'Structure model' struct_biol 5 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_exptl_crystal_grow.temp' 2 4 'Structure model' '_pdbx_database_status.recvd_author_approval' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language REFMAC refinement 5.2.0005 ? 1 ? ? ? ? MOSFLM 'data reduction' . ? 2 ? ? ? ? SCALA 'data scaling' . ? 3 ? ? ? ? SHARP phasing . ? 4 ? ? ? ? # _pdbx_entry_details.entry_id 2C08 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;UNIPROT DOES NOT CURRENTLY HAVE A FULL-LENGTH ENTRY FOR RAT ENDOPHILIN A1. THE FRAGMENTS FROM 25-104 HAS BEEN MAPPED TO ITSELF AT THE PRESENT TIME DUE TO A LACK OF AVAILABLE SEQUENCE DATABASE MAPPING ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 28 ? ? 65.96 120.54 2 1 SER A 64 ? ? -160.03 71.44 3 1 ALA A 66 ? ? -54.63 103.70 4 1 CYS A 108 ? ? -87.22 -156.50 5 1 PHE A 139 ? ? -134.13 -55.77 6 1 ASP A 148 ? ? -68.91 -81.39 7 1 LYS A 149 ? ? -50.24 -79.52 8 1 ARG A 174 ? ? -91.13 34.64 # _pdbx_validate_polymer_linkage.id 1 _pdbx_validate_polymer_linkage.PDB_model_num 1 _pdbx_validate_polymer_linkage.auth_atom_id_1 C _pdbx_validate_polymer_linkage.auth_asym_id_1 A _pdbx_validate_polymer_linkage.auth_comp_id_1 LYS _pdbx_validate_polymer_linkage.auth_seq_id_1 67 _pdbx_validate_polymer_linkage.PDB_ins_code_1 ? _pdbx_validate_polymer_linkage.label_alt_id_1 ? _pdbx_validate_polymer_linkage.auth_atom_id_2 N _pdbx_validate_polymer_linkage.auth_asym_id_2 A _pdbx_validate_polymer_linkage.auth_comp_id_2 PRO _pdbx_validate_polymer_linkage.auth_seq_id_2 87 _pdbx_validate_polymer_linkage.PDB_ins_code_2 ? _pdbx_validate_polymer_linkage.label_alt_id_2 ? _pdbx_validate_polymer_linkage.dist 12.45 #