HEADER CHAPERONE 02-SEP-05 2C0G TITLE STRUCTURE OF PDI-RELATED CHAPERONE, WIND MUTANT-Y53S COMPND MOL_ID: 1; COMPND 2 MOLECULE: WINDBEUTEL PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ERP29 HOMOLOG; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: XL1-BLUE; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQE-30 (QIAGEN) KEYWDS WIND, WINDBEUTEL, PDI-DBETA, PDI, PROTEIN DISULFIDE ISOMERASE, PIPE, KEYWDS 2 DORSAL-VENTRAL PATTERNING, CHAPERONE, WIND MUTANTS, DEVELOPMENTAL KEYWDS 3 PROTEIN, ENDOPLASMIC RETICULUM EXPDTA X-RAY DIFFRACTION AUTHOR M.SEVVANA,Q.MA,K.BARNEWITZ,C.GUO,H.-D.SOLING,D.M.FERRARI, AUTHOR 2 G.M.SHELDRICK REVDAT 5 20-NOV-24 2C0G 1 REMARK REVDAT 4 13-DEC-23 2C0G 1 REMARK REVDAT 3 22-OCT-14 2C0G 1 REMARK VERSN REVDAT 2 24-FEB-09 2C0G 1 VERSN REVDAT 1 29-AUG-06 2C0G 0 JRNL AUTH M.SEVVANA,M.BIADENE,Q.MA,C.GUO,H.-D.SOLING,G.M.SHELDRICK, JRNL AUTH 2 D.M.FERRARI JRNL TITL STRUCTURAL ELUCIDATION OF THE PDI-RELATED CHAPERONE WIND JRNL TITL 2 WITH THE HELP OF MUTANTS. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 62 589 2006 JRNL REFN ISSN 0907-4449 JRNL PMID 16699185 JRNL DOI 10.1107/S0907444906010456 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Q.MA,C.GUO,K.BARNEWITZ,G.M.SHELDRICK,H.-D.SOELING,I.USON, REMARK 1 AUTH 2 D.M.FERRARI,G.M.SHELDRICK REMARK 1 TITL CRYSTAL STRUCTURE AND FUNCTIONAL ANALYSIS OF DROSOPHILA REMARK 1 TITL 2 WIND, A PROTEIN-DISULFIDE ISOMERASE-RELATED PROTEIN REMARK 1 REF J.BIOL.CHEM. V. 45 44600 2003 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 12941941 REMARK 1 DOI 10.1074/JBC.M307966200 REMARK 1 REFERENCE 2 REMARK 1 AUTH K.BARNEWITZ,C.GUO,M.SEVVANA,Q.MA,G.M.SHELDRICK,H.-D.SOELING, REMARK 1 AUTH 2 D.M.FERRARI REMARK 1 TITL MAPPING OF A SUSTRATE BINDING SITE IN THE PROTEIN DISULFIDE REMARK 1 TITL 2 ISOMERASE-RELATED CHAPERONE WIND BASED ON PROTEIN FUNCTION REMARK 1 TITL 3 AND CRYSTAL STRUCTURE REMARK 1 REF J.BIOL.CHEM. V. 38 39829 2004 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 15252019 REMARK 1 DOI 10.1074/JBC.M406839200 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 47523 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2487 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3304 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 151 REMARK 3 BIN FREE R VALUE : 0.3360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3299 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 167 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.34000 REMARK 3 B22 (A**2) : -0.47000 REMARK 3 B33 (A**2) : -0.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.55000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.125 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.129 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.177 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3367 ; 0.021 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4551 ; 1.784 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 449 ; 5.470 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 133 ;30.054 ;24.737 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 533 ;13.880 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;14.404 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 512 ; 0.137 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2540 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1560 ; 0.220 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2397 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 171 ; 0.134 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 44 ; 0.263 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.152 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2208 ; 1.040 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3492 ; 1.752 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1177 ; 3.002 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1058 ; 4.464 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1024 A 1146 REMARK 3 ORIGIN FOR THE GROUP (A): 24.7646 51.4322 61.0756 REMARK 3 T TENSOR REMARK 3 T11: -0.1015 T22: -0.1137 REMARK 3 T33: -0.0400 T12: -0.0111 REMARK 3 T13: -0.0282 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 2.4156 L22: 3.0097 REMARK 3 L33: 2.4222 L12: 0.3155 REMARK 3 L13: 0.6987 L23: 0.2399 REMARK 3 S TENSOR REMARK 3 S11: -0.0894 S12: 0.0608 S13: 0.2426 REMARK 3 S21: -0.0610 S22: 0.0185 S23: 0.0189 REMARK 3 S31: -0.1571 S32: 0.0228 S33: 0.0709 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1147 A 1251 REMARK 3 ORIGIN FOR THE GROUP (A): 17.6024 35.2572 32.8236 REMARK 3 T TENSOR REMARK 3 T11: -0.1026 T22: -0.0678 REMARK 3 T33: -0.0751 T12: -0.0027 REMARK 3 T13: 0.0129 T23: -0.0113 REMARK 3 L TENSOR REMARK 3 L11: 1.7285 L22: 2.0090 REMARK 3 L33: 1.9689 L12: -0.4936 REMARK 3 L13: -0.3896 L23: 0.3960 REMARK 3 S TENSOR REMARK 3 S11: 0.0325 S12: 0.0323 S13: -0.0928 REMARK 3 S21: -0.0490 S22: -0.0971 S23: -0.0549 REMARK 3 S31: -0.0692 S32: 0.1083 S33: 0.0646 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1024 B 1146 REMARK 3 ORIGIN FOR THE GROUP (A): 20.5442 31.9809 74.5928 REMARK 3 T TENSOR REMARK 3 T11: -0.0028 T22: -0.0981 REMARK 3 T33: -0.0864 T12: 0.0128 REMARK 3 T13: 0.0151 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 1.7059 L22: 2.6045 REMARK 3 L33: 2.3826 L12: -0.0279 REMARK 3 L13: 0.2264 L23: -0.2776 REMARK 3 S TENSOR REMARK 3 S11: -0.0961 S12: -0.2337 S13: -0.0652 REMARK 3 S21: 0.4581 S22: 0.0628 S23: 0.0684 REMARK 3 S31: 0.1012 S32: -0.0212 S33: 0.0333 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1147 B 1248 REMARK 3 ORIGIN FOR THE GROUP (A): 39.0950 42.9539 99.2271 REMARK 3 T TENSOR REMARK 3 T11: 0.0539 T22: 0.1024 REMARK 3 T33: -0.0818 T12: 0.0796 REMARK 3 T13: -0.0225 T23: -0.0502 REMARK 3 L TENSOR REMARK 3 L11: 4.6466 L22: 5.8511 REMARK 3 L33: 8.0434 L12: -0.5729 REMARK 3 L13: 1.3127 L23: 3.8388 REMARK 3 S TENSOR REMARK 3 S11: -0.0201 S12: 0.4238 S13: 0.0798 REMARK 3 S21: 0.0425 S22: 0.2714 S23: -0.2511 REMARK 3 S31: 0.5507 S32: 0.8452 S33: -0.2514 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2C0G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-SEP-05. REMARK 100 THE DEPOSITION ID IS D_1290025485. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47523 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.860 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.3200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.26000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.960 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: PDB ENTRY 1OVN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 10.0MG/ML Y53S IN 5MM HEPES REMARK 280 PH7.5, 25MM NACL, 0.0025%(V/V) BETA-MERCAPTOETHANOL RESERVOIR: REMARK 280 0.1M MES PH6.0, 50MM NACL, 18%(V/V) PEG 400 5% GLYCEROL CRYO: REMARK 280 0.1M MES PH6.0, 25%(V/V) PEG 400, 10%(V/V)GLYCEROL,50MM NACL, PH REMARK 280 6.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 54.23800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.27850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 54.23800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.27850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1010 REMARK 465 ARG A 1011 REMARK 465 GLY A 1012 REMARK 465 SER A 1013 REMARK 465 HIS A 1014 REMARK 465 HIS A 1015 REMARK 465 HIS A 1016 REMARK 465 HIS A 1017 REMARK 465 HIS A 1018 REMARK 465 HIS A 1019 REMARK 465 GLY A 1020 REMARK 465 SER A 1021 REMARK 465 VAL A 1022 REMARK 465 THR A 1023 REMARK 465 PRO A 1252 REMARK 465 GLU A 1253 REMARK 465 LYS A 1254 REMARK 465 GLU A 1255 REMARK 465 GLU A 1256 REMARK 465 LEU A 1257 REMARK 465 MET B 1010 REMARK 465 ARG B 1011 REMARK 465 GLY B 1012 REMARK 465 SER B 1013 REMARK 465 HIS B 1014 REMARK 465 HIS B 1015 REMARK 465 HIS B 1016 REMARK 465 HIS B 1017 REMARK 465 HIS B 1018 REMARK 465 HIS B 1019 REMARK 465 GLY B 1020 REMARK 465 SER B 1021 REMARK 465 VAL B 1022 REMARK 465 THR B 1023 REMARK 465 HIS B 1245 REMARK 465 LYS B 1246 REMARK 465 VAL B 1247 REMARK 465 THR B 1248 REMARK 465 LYS B 1249 REMARK 465 THR B 1250 REMARK 465 ALA B 1251 REMARK 465 PRO B 1252 REMARK 465 GLU B 1253 REMARK 465 LYS B 1254 REMARK 465 GLU B 1255 REMARK 465 GLU B 1256 REMARK 465 LEU B 1257 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A1060 CD OE1 OE2 REMARK 470 LYS A1074 CB CG CD CE NZ REMARK 470 LYS A1084 CD CE NZ REMARK 470 ASP A1085 CG OD1 OD2 REMARK 470 TYR A1086 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A1089 CD1 REMARK 470 GLU A1090 CG CD OE1 OE2 REMARK 470 LYS A1092 CE NZ REMARK 470 LYS A1099 CD CE NZ REMARK 470 GLU A1117 CD OE1 OE2 REMARK 470 LYS A1151 CD CE NZ REMARK 470 LYS A1158 CG CD CE NZ REMARK 470 LYS A1170 CG CD CE NZ REMARK 470 GLU A1173 CD OE1 OE2 REMARK 470 LYS A1174 NZ REMARK 470 GLN A1176 OE1 NE2 REMARK 470 LYS A1178 CE NZ REMARK 470 GLN A1189 CD OE1 NE2 REMARK 470 GLU A1210 CD OE1 OE2 REMARK 470 GLU A1211 CG CD OE1 OE2 REMARK 470 ARG A1218 NH2 REMARK 470 LYS A1229 CE NZ REMARK 470 GLU A1230 CG CD OE1 OE2 REMARK 470 ARG A1234 CZ NH1 NH2 REMARK 470 ILE B1051 CD1 REMARK 470 GLU B1057 OE1 REMARK 470 GLU B1060 CD OE1 OE2 REMARK 470 LYS B1071 CE NZ REMARK 470 LYS B1084 CG CD CE NZ REMARK 470 ASP B1085 CB CG OD1 OD2 REMARK 470 TYR B1086 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B1088 CB CG CD OE1 OE2 REMARK 470 GLU B1090 CG CD OE1 OE2 REMARK 470 LYS B1092 CE NZ REMARK 470 ASP B1102 CG OD1 OD2 REMARK 470 LYS B1103 CB CG CD CE NZ REMARK 470 LYS B1112 CE NZ REMARK 470 LYS B1133 CE NZ REMARK 470 ARG B1146 NE CZ NH1 NH2 REMARK 470 ASP B1147 OD1 OD2 REMARK 470 LYS B1151 CB CG CD CE NZ REMARK 470 GLU B1152 CG CD OE1 OE2 REMARK 470 PHE B1153 CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B1155 CB CG CD OE1 OE2 REMARK 470 LEU B1157 CD1 CD2 REMARK 470 LYS B1158 CG CD CE NZ REMARK 470 ASN B1159 CB CG OD1 ND2 REMARK 470 ALA B1161 CB REMARK 470 ILE B1163 CG1 CG2 CD1 REMARK 470 PRO B1164 CB CG CD REMARK 470 ASP B1165 CB CG OD1 OD2 REMARK 470 ALA B1166 CB REMARK 470 GLU B1167 CB CG CD OE1 OE2 REMARK 470 LYS B1170 CG CD CE NZ REMARK 470 LEU B1171 CD2 REMARK 470 ILE B1172 CD1 REMARK 470 GLU B1173 CB CG CD OE1 OE2 REMARK 470 LYS B1174 CD CE NZ REMARK 470 LEU B1175 CD1 REMARK 470 GLN B1176 CB CG CD OE1 NE2 REMARK 470 LYS B1178 CB CG CD CE NZ REMARK 470 GLN B1179 CB CG CD OE1 NE2 REMARK 470 GLU B1180 CB CG CD OE1 OE2 REMARK 470 GLN B1181 CG CD OE1 NE2 REMARK 470 LEU B1182 CB CG CD1 CD2 REMARK 470 ASP B1184 CG OD1 OD2 REMARK 470 PRO B1185 CB CG CD REMARK 470 GLU B1186 CG CD OE1 OE2 REMARK 470 GLN B1187 CB CG CD OE1 NE2 REMARK 470 GLN B1188 CB CG CD OE1 NE2 REMARK 470 ARG B1192 CG CD NE CZ NH1 NH2 REMARK 470 LEU B1195 CG CD1 CD2 REMARK 470 ILE B1196 CD1 REMARK 470 ARG B1199 NE CZ NH1 NH2 REMARK 470 GLU B1203 CG CD OE1 OE2 REMARK 470 ASP B1207 CB CG OD1 OD2 REMARK 470 LEU B1209 CB CG CD1 CD2 REMARK 470 GLU B1210 CB CG CD OE1 OE2 REMARK 470 LYS B1214 CD CE NZ REMARK 470 ARG B1215 CZ NH1 NH2 REMARK 470 LEU B1217 CD1 CD2 REMARK 470 ARG B1218 CG CD NE CZ NH1 NH2 REMARK 470 LYS B1220 CG CD CE NZ REMARK 470 ALA B1221 CB REMARK 470 LYS B1223 CB CG CD CE NZ REMARK 470 VAL B1224 CG1 CG2 REMARK 470 THR B1225 CB OG1 CG2 REMARK 470 GLU B1226 CD OE1 OE2 REMARK 470 LYS B1228 CB CG CD CE NZ REMARK 470 LYS B1229 CD CE NZ REMARK 470 GLU B1230 OE1 OE2 REMARK 470 GLU B1231 CB CG CD OE1 OE2 REMARK 470 LEU B1233 CD1 CD2 REMARK 470 ARG B1234 NH1 REMARK 470 LYS B1235 CE NZ REMARK 470 GLU B1240 CD OE1 OE2 REMARK 470 VAL B1241 CG2 REMARK 470 ARG B1243 CB CG CD NE CZ NH1 NH2 REMARK 470 VAL B1244 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE ARG A 1218 O HOH A 2103 2.17 REMARK 500 O HOH A 2037 O HOH A 2038 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A1152 CD GLU A1152 OE1 0.069 REMARK 500 PRO B1164 CA PRO B1164 C 0.143 REMARK 500 ASP B1165 N ASP B1165 CA 0.154 REMARK 500 GLN B1168 CD GLN B1168 OE1 0.152 REMARK 500 GLN B1168 CD GLN B1168 NE2 0.167 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A1050 CB - CG - OD1 ANGL. DEV. = 7.4 DEGREES REMARK 500 ARG A1218 NE - CZ - NH1 ANGL. DEV. = -5.2 DEGREES REMARK 500 CYS B1024 CA - CB - SG ANGL. DEV. = 7.4 DEGREES REMARK 500 LEU B1132 CB - CG - CD1 ANGL. DEV. = 12.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A1112 58.93 -112.99 REMARK 500 ASP B1102 -60.97 -28.03 REMARK 500 LYS B1112 52.55 -118.02 REMARK 500 ASP B1165 -6.79 -57.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 2252 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 2245 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1OVN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE AND FUNCTIONAL ANALYSIS OF DROSOPHILAWIND-- A PDI- REMARK 900 RELATED PROTEIN REMARK 900 RELATED ID: 2C0E RELATED DB: PDB REMARK 900 STRUCTURE OF PDI-RELATED CHAPERONE, WIND WITH HIS-TAG ON C-TERMINUS. REMARK 900 RELATED ID: 2C0F RELATED DB: PDB REMARK 900 STRUCTURE OF WIND Y53F MUTANT REMARK 900 RELATED ID: 2C1Y RELATED DB: PDB REMARK 900 STRUCTURE OF PDI-RELATED CHAPERONE, WIND MUTANT-Y55K DBREF 2C0G A 1010 1021 PDB 2C0G 2C0G 1010 1021 DBREF 2C0G A 1022 1257 UNP O44342 WBL_DROME 22 257 DBREF 2C0G B 1010 1021 PDB 2C0G 2C0G 1010 1021 DBREF 2C0G B 1022 1257 UNP O44342 WBL_DROME 22 257 SEQADV 2C0G SER A 1053 UNP O44342 TYR 53 ENGINEERED MUTATION SEQADV 2C0G SER B 1053 UNP O44342 TYR 53 ENGINEERED MUTATION SEQRES 1 A 248 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER VAL SEQRES 2 A 248 THR CYS THR GLY CYS VAL ASP LEU ASP GLU LEU SER PHE SEQRES 3 A 248 GLU LYS THR VAL GLU ARG PHE PRO TYR SER VAL VAL LYS SEQRES 4 A 248 PHE ASP ILE ALA SER PRO TYR GLY GLU LYS HIS GLU ALA SEQRES 5 A 248 PHE THR ALA PHE SER LYS SER ALA HIS LYS ALA THR LYS SEQRES 6 A 248 ASP LEU LEU ILE ALA THR VAL GLY VAL LYS ASP TYR GLY SEQRES 7 A 248 GLU LEU GLU ASN LYS ALA LEU GLY ASP ARG TYR LYS VAL SEQRES 8 A 248 ASP ASP LYS ASN PHE PRO SER ILE PHE LEU PHE LYS GLY SEQRES 9 A 248 ASN ALA ASP GLU TYR VAL GLN LEU PRO SER HIS VAL ASP SEQRES 10 A 248 VAL THR LEU ASP ASN LEU LYS ALA PHE VAL SER ALA ASN SEQRES 11 A 248 THR PRO LEU TYR ILE GLY ARG ASP GLY CYS ILE LYS GLU SEQRES 12 A 248 PHE ASN GLU VAL LEU LYS ASN TYR ALA ASN ILE PRO ASP SEQRES 13 A 248 ALA GLU GLN LEU LYS LEU ILE GLU LYS LEU GLN ALA LYS SEQRES 14 A 248 GLN GLU GLN LEU THR ASP PRO GLU GLN GLN GLN ASN ALA SEQRES 15 A 248 ARG ALA TYR LEU ILE TYR MET ARG LYS ILE HIS GLU VAL SEQRES 16 A 248 GLY TYR ASP PHE LEU GLU GLU GLU THR LYS ARG LEU LEU SEQRES 17 A 248 ARG LEU LYS ALA GLY LYS VAL THR GLU ALA LYS LYS GLU SEQRES 18 A 248 GLU LEU LEU ARG LYS LEU ASN ILE LEU GLU VAL PHE ARG SEQRES 19 A 248 VAL HIS LYS VAL THR LYS THR ALA PRO GLU LYS GLU GLU SEQRES 20 A 248 LEU SEQRES 1 B 248 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER VAL SEQRES 2 B 248 THR CYS THR GLY CYS VAL ASP LEU ASP GLU LEU SER PHE SEQRES 3 B 248 GLU LYS THR VAL GLU ARG PHE PRO TYR SER VAL VAL LYS SEQRES 4 B 248 PHE ASP ILE ALA SER PRO TYR GLY GLU LYS HIS GLU ALA SEQRES 5 B 248 PHE THR ALA PHE SER LYS SER ALA HIS LYS ALA THR LYS SEQRES 6 B 248 ASP LEU LEU ILE ALA THR VAL GLY VAL LYS ASP TYR GLY SEQRES 7 B 248 GLU LEU GLU ASN LYS ALA LEU GLY ASP ARG TYR LYS VAL SEQRES 8 B 248 ASP ASP LYS ASN PHE PRO SER ILE PHE LEU PHE LYS GLY SEQRES 9 B 248 ASN ALA ASP GLU TYR VAL GLN LEU PRO SER HIS VAL ASP SEQRES 10 B 248 VAL THR LEU ASP ASN LEU LYS ALA PHE VAL SER ALA ASN SEQRES 11 B 248 THR PRO LEU TYR ILE GLY ARG ASP GLY CYS ILE LYS GLU SEQRES 12 B 248 PHE ASN GLU VAL LEU LYS ASN TYR ALA ASN ILE PRO ASP SEQRES 13 B 248 ALA GLU GLN LEU LYS LEU ILE GLU LYS LEU GLN ALA LYS SEQRES 14 B 248 GLN GLU GLN LEU THR ASP PRO GLU GLN GLN GLN ASN ALA SEQRES 15 B 248 ARG ALA TYR LEU ILE TYR MET ARG LYS ILE HIS GLU VAL SEQRES 16 B 248 GLY TYR ASP PHE LEU GLU GLU GLU THR LYS ARG LEU LEU SEQRES 17 B 248 ARG LEU LYS ALA GLY LYS VAL THR GLU ALA LYS LYS GLU SEQRES 18 B 248 GLU LEU LEU ARG LYS LEU ASN ILE LEU GLU VAL PHE ARG SEQRES 19 B 248 VAL HIS LYS VAL THR LYS THR ALA PRO GLU LYS GLU GLU SEQRES 20 B 248 LEU HET NA A2252 1 HET CL B2245 1 HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION FORMUL 3 NA NA 1+ FORMUL 4 CL CL 1- FORMUL 5 HOH *167(H2 O) HELIX 1 1 SER A 1034 GLU A 1040 1 7 HELIX 2 2 GLY A 1056 THR A 1073 1 18 HELIX 3 3 ASN A 1091 TYR A 1098 1 8 HELIX 4 4 THR A 1128 THR A 1140 1 13 HELIX 5 5 ILE A 1150 LYS A 1158 1 9 HELIX 6 6 ASN A 1159 ILE A 1163 5 5 HELIX 7 7 PRO A 1164 LEU A 1182 1 19 HELIX 8 8 ASP A 1184 GLY A 1205 1 22 HELIX 9 9 TYR A 1206 ALA A 1221 1 16 HELIX 10 10 THR A 1225 PHE A 1242 1 18 HELIX 11 11 SER B 1034 GLU B 1040 1 7 HELIX 12 12 GLY B 1056 THR B 1073 1 18 HELIX 13 13 ASN B 1091 LYS B 1099 1 9 HELIX 14 14 THR B 1128 THR B 1140 1 13 HELIX 15 15 ILE B 1150 GLU B 1155 1 6 HELIX 16 16 ASP B 1165 GLU B 1180 1 16 HELIX 17 17 ASP B 1184 GLY B 1205 1 22 HELIX 18 18 TYR B 1206 ALA B 1221 1 16 HELIX 19 19 THR B 1225 VAL B 1241 1 17 SHEET 1 AA 5 VAL A1028 ASP A1029 0 SHEET 2 AA 5 LEU A1076 VAL A1083 1 O ILE A1078 N VAL A1028 SHEET 3 AA 5 TYR A1044 ILE A1051 1 O TYR A1044 N LEU A1077 SHEET 4 AA 5 SER A1107 PHE A1111 -1 O SER A1107 N PHE A1049 SHEET 5 AA 5 TYR A1118 GLN A1120 -1 O VAL A1119 N LEU A1110 SHEET 1 BA 5 VAL B1028 ASP B1029 0 SHEET 2 BA 5 LEU B1076 VAL B1083 1 O ILE B1078 N VAL B1028 SHEET 3 BA 5 TYR B1044 ILE B1051 1 O TYR B1044 N LEU B1077 SHEET 4 BA 5 SER B1107 PHE B1111 -1 O SER B1107 N PHE B1049 SHEET 5 BA 5 TYR B1118 GLN B1120 -1 O VAL B1119 N LEU B1110 SSBOND 1 CYS A 1024 CYS A 1027 1555 1555 2.09 SSBOND 2 CYS B 1024 CYS B 1027 1555 1555 2.04 CISPEP 1 PHE A 1105 PRO A 1106 0 -5.02 CISPEP 2 PHE B 1105 PRO B 1106 0 -4.74 SITE 1 AC1 4 GLN A1179 GLN A1188 ARG A1192 HOH A2079 SITE 1 AC2 4 LEU B1033 GLU B1036 LYS B1037 HOH B2005 CRYST1 108.476 50.557 98.900 90.00 112.06 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009219 0.000000 0.003736 0.00000 SCALE2 0.000000 0.019780 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010910 0.00000