HEADER VIRAL PROTEIN/TRANSFERASE 06-SEP-05 2C0N TITLE CRYSTAL STRUCTURE OF A197 FROM STIV COMPND MOL_ID: 1; COMPND 2 MOLECULE: A197; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS TURRETED ICOSAHEDRAL VIRUS; SOURCE 3 ORGANISM_COMMON: STIV; SOURCE 4 ORGANISM_TAXID: 269145; SOURCE 5 STRAIN: ISOLATE YNPRC179; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PEXP14-STIVA197; SOURCE 10 OTHER_DETAILS: STIV WAS ISOLATED FROM SULFOLOBUS SPECIES IN ACIDIC SOURCE 11 HOT SPRINGS (PH 2.9-3.9, 72-92 DEGREES C) IN THE RABBIT CREEK SOURCE 12 THERMAL AREA WITHIN MIDWAY GEYSER BASIN IN YELLOWSTONE NATIONAL PARK KEYWDS VIRAL PROTEIN-TRANSFERASE COMPLEX, VIRAL PROTEIN, VIRUS, ARCHAEA, KEYWDS 2 CRENARCHAEA, ARCHAEAL VIRUS, CRENARCHAEAL VIRUS, THERMOPHILIC KEYWDS 3 PROTEIN, THERMOPHILIC VIRUS, STIV, SULFOLOBUS TURRETED ICOSAHEDRAL KEYWDS 4 VIRUS, SULFOLOBUS, GLYCOSYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.T.LARSON,D.REITER,M.YOUNG,C.M.LAWRENCE REVDAT 7 08-MAY-19 2C0N 1 REMARK REVDAT 6 27-JUN-18 2C0N 1 LINK REVDAT 5 13-JUL-11 2C0N 1 VERSN REVDAT 4 24-FEB-09 2C0N 1 VERSN REVDAT 3 19-JUL-06 2C0N 1 JRNL REVDAT 2 17-NOV-05 2C0N 1 LINK REVDAT 1 29-SEP-05 2C0N 0 JRNL AUTH E.T.LARSON,D.REITER,M.YOUNG,C.M.LAWRENCE JRNL TITL STRUCTURE OF A197 FROM SULFOLOBUS TURRETED ICOSAHEDRAL JRNL TITL 2 VIRUS: A CRENARCHAEAL VIRAL GLYCOSYLTRANSFERASE EXHIBITING JRNL TITL 3 THE GT-A FOLD. JRNL REF J.VIROL. V. 80 7636 2006 JRNL REFN ISSN 0022-538X JRNL PMID 16840342 JRNL DOI 10.1128/JVI.00567-06 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.RICE,L.TANG,K.STEDMAN,F.ROBERTO,J.SPUHLER,E.GILLITZER, REMARK 1 AUTH 2 J.E.JOHNSON,T.DOUGLAS,M.YOUNG REMARK 1 TITL THE STRUCTURE OF A THERMOPHILIC ARCHAEAL VIRUS SHOWS A REMARK 1 TITL 2 DOUBLE-STRANDED DNA VIRAL CAPSID TYPE THAT SPANS ALL DOMAINS REMARK 1 TITL 3 OF LIFE REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 101 7716 2004 REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 15123802 REMARK 1 DOI 10.1073/PNAS.0401773101 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 14813 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 768 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.86 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.91 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1119 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.1440 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.2340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1595 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 105 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.71000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.72000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.153 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.134 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.082 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.369 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1650 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1515 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2219 ; 1.545 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3509 ; 0.786 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 189 ; 6.578 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 84 ;34.075 ;22.857 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 293 ;14.414 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;18.732 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 236 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1787 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 373 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 303 ; 0.218 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1499 ; 0.209 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 790 ; 0.188 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 981 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 88 ; 0.205 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 26 ; 0.234 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 74 ; 0.234 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.302 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 1 ; 0.058 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1112 ; 1.423 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 387 ; 0.259 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1537 ; 1.437 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 783 ; 2.723 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 682 ; 3.703 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 27 REMARK 3 ORIGIN FOR THE GROUP (A): 38.2727 18.6764 38.8232 REMARK 3 T TENSOR REMARK 3 T11: -0.0187 T22: -0.1097 REMARK 3 T33: -0.0650 T12: 0.0092 REMARK 3 T13: 0.0334 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 3.6849 L22: 1.4526 REMARK 3 L33: 1.8367 L12: -0.0892 REMARK 3 L13: -0.4582 L23: 0.3215 REMARK 3 S TENSOR REMARK 3 S11: -0.0435 S12: -0.0699 S13: -0.2552 REMARK 3 S21: 0.0103 S22: 0.0837 S23: -0.0126 REMARK 3 S31: 0.2300 S32: -0.0142 S33: -0.0402 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 28 A 41 REMARK 3 ORIGIN FOR THE GROUP (A): 47.2769 20.8229 39.7064 REMARK 3 T TENSOR REMARK 3 T11: -0.0274 T22: -0.0784 REMARK 3 T33: -0.0642 T12: 0.0606 REMARK 3 T13: 0.0095 T23: -0.0372 REMARK 3 L TENSOR REMARK 3 L11: 7.6399 L22: 7.4233 REMARK 3 L33: 5.3066 L12: 2.0033 REMARK 3 L13: -2.2423 L23: 0.7342 REMARK 3 S TENSOR REMARK 3 S11: -0.2266 S12: -0.0906 S13: -0.0842 REMARK 3 S21: -0.0206 S22: 0.3759 S23: -0.3237 REMARK 3 S31: 0.1720 S32: 0.3733 S33: -0.1493 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 42 A 52 REMARK 3 ORIGIN FOR THE GROUP (A): 54.0623 15.7258 39.5354 REMARK 3 T TENSOR REMARK 3 T11: 0.0058 T22: 0.0362 REMARK 3 T33: 0.0031 T12: 0.1294 REMARK 3 T13: -0.0200 T23: -0.0389 REMARK 3 L TENSOR REMARK 3 L11: 7.4593 L22: 11.5403 REMARK 3 L33: 4.8425 L12: -4.1755 REMARK 3 L13: 1.4542 L23: 0.2042 REMARK 3 S TENSOR REMARK 3 S11: -0.1066 S12: -0.5506 S13: -0.3624 REMARK 3 S21: -0.0800 S22: 0.2340 S23: 0.0669 REMARK 3 S31: 0.1512 S32: 0.2450 S33: -0.1274 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 53 A 67 REMARK 3 ORIGIN FOR THE GROUP (A): 45.3006 16.3332 33.3747 REMARK 3 T TENSOR REMARK 3 T11: -0.0290 T22: -0.0774 REMARK 3 T33: -0.0283 T12: 0.0178 REMARK 3 T13: 0.0445 T23: -0.0537 REMARK 3 L TENSOR REMARK 3 L11: 5.9920 L22: 2.7525 REMARK 3 L33: 1.8135 L12: -1.7278 REMARK 3 L13: 0.8733 L23: -0.2657 REMARK 3 S TENSOR REMARK 3 S11: -0.1050 S12: 0.0388 S13: -0.5190 REMARK 3 S21: 0.0690 S22: 0.1745 S23: 0.0699 REMARK 3 S31: 0.2188 S32: 0.1218 S33: -0.0694 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 68 A 81 REMARK 3 ORIGIN FOR THE GROUP (A): 58.4529 7.3468 20.3212 REMARK 3 T TENSOR REMARK 3 T11: 0.0901 T22: 0.0624 REMARK 3 T33: 0.0062 T12: 0.1048 REMARK 3 T13: 0.0050 T23: -0.1310 REMARK 3 L TENSOR REMARK 3 L11: 17.8557 L22: 8.4173 REMARK 3 L33: 3.3967 L12: -7.2033 REMARK 3 L13: -7.2148 L23: 4.5396 REMARK 3 S TENSOR REMARK 3 S11: 0.0011 S12: 0.0350 S13: -0.1640 REMARK 3 S21: -0.1836 S22: -0.0492 S23: 0.0172 REMARK 3 S31: 0.0879 S32: -0.1879 S33: 0.0481 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 82 A 91 REMARK 3 ORIGIN FOR THE GROUP (A): 52.7199 19.2402 28.4515 REMARK 3 T TENSOR REMARK 3 T11: -0.0243 T22: 0.0202 REMARK 3 T33: -0.0161 T12: 0.0361 REMARK 3 T13: 0.0071 T23: -0.1019 REMARK 3 L TENSOR REMARK 3 L11: 6.2335 L22: 5.3225 REMARK 3 L33: 1.9893 L12: -5.5752 REMARK 3 L13: 0.1543 L23: -0.7583 REMARK 3 S TENSOR REMARK 3 S11: -0.4314 S12: -0.0767 S13: 0.1315 REMARK 3 S21: 0.4479 S22: 0.4115 S23: -0.2626 REMARK 3 S31: -0.1599 S32: 0.4169 S33: 0.0199 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 92 A 107 REMARK 3 ORIGIN FOR THE GROUP (A): 41.8131 32.2613 22.2566 REMARK 3 T TENSOR REMARK 3 T11: 0.0058 T22: -0.0131 REMARK 3 T33: -0.0372 T12: -0.0339 REMARK 3 T13: 0.0493 T23: 0.0161 REMARK 3 L TENSOR REMARK 3 L11: 6.6980 L22: 4.3308 REMARK 3 L33: 4.1489 L12: -3.2746 REMARK 3 L13: -0.7735 L23: 0.7807 REMARK 3 S TENSOR REMARK 3 S11: 0.1495 S12: 0.2407 S13: 0.2000 REMARK 3 S21: -0.1733 S22: -0.0914 S23: -0.1224 REMARK 3 S31: -0.2502 S32: -0.0703 S33: -0.0581 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 108 A 150 REMARK 3 ORIGIN FOR THE GROUP (A): 49.4240 14.4022 25.7273 REMARK 3 T TENSOR REMARK 3 T11: -0.0030 T22: 0.0250 REMARK 3 T33: -0.0112 T12: 0.0357 REMARK 3 T13: 0.0224 T23: -0.1021 REMARK 3 L TENSOR REMARK 3 L11: 2.9807 L22: 1.4238 REMARK 3 L33: 4.2872 L12: -0.7234 REMARK 3 L13: 0.2064 L23: 0.1792 REMARK 3 S TENSOR REMARK 3 S11: 0.1017 S12: 0.2906 S13: -0.2233 REMARK 3 S21: -0.0906 S22: -0.0350 S23: -0.0324 REMARK 3 S31: 0.4248 S32: 0.0720 S33: -0.0667 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 151 A 166 REMARK 3 ORIGIN FOR THE GROUP (A): 54.8575 20.2261 22.0674 REMARK 3 T TENSOR REMARK 3 T11: -0.0367 T22: 0.0561 REMARK 3 T33: -0.0538 T12: 0.0238 REMARK 3 T13: 0.0711 T23: -0.0496 REMARK 3 L TENSOR REMARK 3 L11: 7.4296 L22: 4.0958 REMARK 3 L33: 5.8467 L12: 0.3339 REMARK 3 L13: 2.4614 L23: 2.1861 REMARK 3 S TENSOR REMARK 3 S11: 0.1135 S12: 0.6014 S13: 0.1240 REMARK 3 S21: -0.2727 S22: 0.0536 S23: -0.2753 REMARK 3 S31: -0.0853 S32: 0.5219 S33: -0.1671 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 167 A 176 REMARK 3 ORIGIN FOR THE GROUP (A): 27.5373 37.3888 37.1746 REMARK 3 T TENSOR REMARK 3 T11: -0.0204 T22: -0.0266 REMARK 3 T33: -0.0217 T12: -0.0239 REMARK 3 T13: -0.0123 T23: -0.0943 REMARK 3 L TENSOR REMARK 3 L11: 5.8486 L22: 6.6191 REMARK 3 L33: 4.5432 L12: -3.7383 REMARK 3 L13: -2.4870 L23: 4.6650 REMARK 3 S TENSOR REMARK 3 S11: -0.2048 S12: -0.4369 S13: 0.4363 REMARK 3 S21: 0.3282 S22: -0.0923 S23: 0.2339 REMARK 3 S31: 0.1156 S32: -0.2412 S33: 0.2971 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 177 A 189 REMARK 3 ORIGIN FOR THE GROUP (A): 32.6395 28.1530 23.4969 REMARK 3 T TENSOR REMARK 3 T11: -0.0490 T22: -0.0600 REMARK 3 T33: -0.0853 T12: -0.0198 REMARK 3 T13: -0.0199 T23: -0.0055 REMARK 3 L TENSOR REMARK 3 L11: 10.4750 L22: 4.8840 REMARK 3 L33: 11.0543 L12: -0.8190 REMARK 3 L13: -3.1121 L23: -0.1511 REMARK 3 S TENSOR REMARK 3 S11: -0.0521 S12: 0.6081 S13: 0.0144 REMARK 3 S21: -0.1482 S22: 0.0032 S23: -0.0592 REMARK 3 S31: 0.3375 S32: 0.0487 S33: 0.0489 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 190 A 198 REMARK 3 ORIGIN FOR THE GROUP (A): 23.7940 16.4376 37.3153 REMARK 3 T TENSOR REMARK 3 T11: 0.0449 T22: -0.0766 REMARK 3 T33: -0.0435 T12: -0.0530 REMARK 3 T13: 0.0278 T23: -0.0181 REMARK 3 L TENSOR REMARK 3 L11: 1.7931 L22: 18.6164 REMARK 3 L33: 8.6703 L12: -0.9814 REMARK 3 L13: 1.5074 L23: -11.8511 REMARK 3 S TENSOR REMARK 3 S11: -0.2144 S12: 0.2342 S13: -0.1462 REMARK 3 S21: -0.1152 S22: 0.3022 S23: -0.1148 REMARK 3 S31: 0.2682 S32: -0.2059 S33: -0.0877 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. TLS MOTION DETERMINATION SERVER (PAINTER & MERRITT REMARK 3 (2005) ACTA CRYST. D61, 465-471) WAS USED FOR SELECTION OF REMARK 3 OPTIMAL TLS GROUPS USED IN FINAL REFINEMENT. AMINO ACIDS 139 TO REMARK 3 147 WERE NOT MODELED DUE TO THE ABSENCE OF INTERPRETABLE REMARK 3 ELECTRON DENSITY. REMARK 4 REMARK 4 2C0N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-SEP-05. REMARK 100 THE DEPOSITION ID IS D_1290025508. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL1-5 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978445, 0.879301 REMARK 200 MONOCHROMATOR : CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15646 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 8.50 REMARK 200 R MERGE FOR SHELL (I) : 0.18000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HANGING DROP VAPOR DIFFUSION IN 0.1 M REMARK 280 MES(PH 6.5), 1.4 M (NH4)2SO4, 10% 1,4-DIOXANE; THEN REMARK 280 CRYOPROTECTED BY A QUICK SOAK IN MOTHER LIQUOR PLUS 25% GLUCOSE., REMARK 280 PH 6.50, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.21100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 35.28000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 40.63300 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 33.21100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.28000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.63300 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 33.21100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 35.28000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 40.63300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 33.21100 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 35.28000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 40.63300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ANNOTATION FOR THIS ENTRY IS PREDICTED REMARK 300 FROM THECRYSTAL STRUCTURE. HOWEVER, THE AUTHORS OF REMARK 300 THIS ENTRYARE CURRENTLY INVESIGATING THE QUATERNARY REMARK 300 STATE OFTHIS MOLECULE BY EXPERIMENTAL METHODS. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 66.42200 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 81.26600 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NI NI A1204 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2037 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A 139 REMARK 465 LYS A 140 REMARK 465 PRO A 141 REMARK 465 ILE A 142 REMARK 465 GLU A 143 REMARK 465 SER A 144 REMARK 465 PRO A 145 REMARK 465 HIS A 146 REMARK 465 TRP A 147 REMARK 465 HIS A 201 REMARK 465 HIS A 202 REMARK 465 HIS A 203 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 73 O HOH A 2044 2.01 REMARK 500 NZ LYS A 73 OG SER A 167 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 34 -169.13 -128.23 REMARK 500 ARG A 101 -88.22 -110.37 REMARK 500 PHE A 120 75.09 -164.45 REMARK 500 ASP A 175 -157.63 -116.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A1204 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 198 ND1 REMARK 620 2 HIS A 200 NE2 118.5 REMARK 620 3 HIS A 198 ND1 0.0 118.5 REMARK 620 4 HIS A 200 NE2 118.5 0.0 118.5 REMARK 620 N 1 2 3 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A1204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DIO A1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DIO A1202 REMARK 999 REMARK 999 SEQUENCE REMARK 999 C-TERMINAL 6XHIS TAG WAS ADDED DURING CLONING, REMARK 999 SELENOMETHIONINES IN PLACE OF METHIONINES DBREF 2C0N A 1 197 UNP Q6Q0L5 Q6Q0L5_9VIRU 1 197 DBREF 2C0N A 198 203 PDB 2C0N 2C0N 198 203 SEQRES 1 A 203 MSE ARG THR LEU PHE PHE ILE PRO SER MSE GLY SER VAL SEQRES 2 A 203 ARG LEU PRO LEU ILE ASP PHE LEU VAL LYS ASN ASP ILE SEQRES 3 A 203 GLU TYR VAL ILE LEU SER ARG ARG ASN HIS VAL ALA VAL SEQRES 4 A 203 GLN ARG GLU ILE ALA LEU ASP MSE PHE LEU GLU MSE LYS SEQRES 5 A 203 ASP TYR ASP THR LEU ALA PHE LEU ASP GLU ASP VAL VAL SEQRES 6 A 203 PRO ILE GLU ILE ASP PHE GLN LYS VAL GLU ALA LYS PHE SEQRES 7 A 203 ASN GLU GLY TYR ASP VAL VAL CYS GLY TYR TYR TYR LEU SEQRES 8 A 203 LYS THR LEU ARG GLY TYR SER VAL TYR ARG LYS ASP TRP SEQRES 9 A 203 GLU LYS GLU ILE PHE ASP GLY GLU VAL ASN GLY CYS GLY SEQRES 10 A 203 LEU GLY PHE THR PHE ILE LYS ARG GLU PHE LEU GLU LYS SEQRES 11 A 203 ILE LYS ARG PRO ALA PHE LEU ALA PHE LYS PRO ILE GLU SEQRES 12 A 203 SER PRO HIS TRP ILE GLY GLU ASP VAL TYR PHE PHE SER SEQRES 13 A 203 THR HIS LYS PRO ARG THR TYR ALA LEU SER SER LEU LYS SEQRES 14 A 203 ALA TYR HIS PHE ILE ASP GLU ARG LEU ALA LEU SER PRO SEQRES 15 A 203 ASP ARG LYS LEU ILE LEU GLN ASN ASP HIS VAL ALA ARG SEQRES 16 A 203 ILE LYS HIS HIS HIS HIS HIS HIS MODRES 2C0N MSE A 1 MET SELENOMETHIONINE MODRES 2C0N MSE A 10 MET SELENOMETHIONINE MODRES 2C0N MSE A 47 MET SELENOMETHIONINE MODRES 2C0N MSE A 51 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 10 8 HET MSE A 47 8 HET MSE A 51 8 HET DIO A1201 6 HET DIO A1202 6 HET SO4 A1203 5 HET NI A1204 1 HETNAM MSE SELENOMETHIONINE HETNAM DIO 1,4-DIETHYLENE DIOXIDE HETNAM SO4 SULFATE ION HETNAM NI NICKEL (II) ION FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 DIO 2(C4 H8 O2) FORMUL 4 SO4 O4 S 2- FORMUL 5 NI NI 2+ FORMUL 6 HOH *105(H2 O) HELIX 1 1 ARG A 14 ASN A 24 1 11 HELIX 2 2 HIS A 36 MSE A 51 1 16 HELIX 3 3 ASP A 70 GLY A 81 1 12 HELIX 4 4 ARG A 125 GLU A 129 1 5 HELIX 5 5 GLY A 149 LYS A 159 1 11 SHEET 1 AA 7 TYR A 28 LEU A 31 0 SHEET 2 AA 7 THR A 3 PRO A 8 1 O PHE A 5 N VAL A 29 SHEET 3 AA 7 THR A 56 LEU A 60 1 O THR A 56 N LEU A 4 SHEET 4 AA 7 PHE A 120 LYS A 124 -1 O THR A 121 N PHE A 59 SHEET 5 AA 7 VAL A 84 TYR A 88 -1 O VAL A 85 N PHE A 122 SHEET 6 AA 7 THR A 162 PHE A 173 1 O TYR A 163 N CYS A 86 SHEET 7 AA 7 VAL A 64 GLU A 68 -1 O VAL A 65 N TYR A 171 SHEET 1 AB 7 TYR A 28 LEU A 31 0 SHEET 2 AB 7 THR A 3 PRO A 8 1 O PHE A 5 N VAL A 29 SHEET 3 AB 7 THR A 56 LEU A 60 1 O THR A 56 N LEU A 4 SHEET 4 AB 7 PHE A 120 LYS A 124 -1 O THR A 121 N PHE A 59 SHEET 5 AB 7 VAL A 84 TYR A 88 -1 O VAL A 85 N PHE A 122 SHEET 6 AB 7 THR A 162 PHE A 173 1 O TYR A 163 N CYS A 86 SHEET 7 AB 7 GLY A 111 GLU A 112 -1 O GLY A 111 N ALA A 164 SHEET 1 AC 2 VAL A 99 TYR A 100 0 SHEET 2 AC 2 GLY A 115 CYS A 116 -1 O GLY A 115 N TYR A 100 LINK C MSE A 1 N ARG A 2 1555 1555 1.33 LINK C SER A 9 N MSE A 10 1555 1555 1.33 LINK C MSE A 10 N GLY A 11 1555 1555 1.35 LINK C ASP A 46 N MSE A 47 1555 1555 1.32 LINK C MSE A 47 N PHE A 48 1555 1555 1.33 LINK C GLU A 50 N MSE A 51 1555 1555 1.33 LINK C MSE A 51 N LYS A 52 1555 1555 1.34 LINK ND1 HIS A 198 NI NI A1204 1555 1555 2.13 LINK NE2 HIS A 200 NI NI A1204 1555 1555 2.01 LINK ND1 HIS A 198 NI NI A1204 1555 4556 2.15 LINK NE2 HIS A 200 NI NI A1204 1555 4556 1.89 CISPEP 1 ARG A 133 PRO A 134 0 8.04 SITE 1 AC1 4 MSE A 1 ARG A 2 HIS A 200 HOH A2105 SITE 1 AC2 2 HIS A 198 HIS A 200 SITE 1 AC3 3 TYR A 100 TRP A 104 VAL A 152 SITE 1 AC4 6 GLU A 80 GLY A 81 TYR A 82 ARG A 161 SITE 2 AC4 6 LEU A 188 GLN A 189 CRYST1 66.422 70.560 81.266 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015055 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014172 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012305 0.00000 HETATM 1 N MSE A 1 48.750 3.052 29.419 1.00 25.10 N HETATM 2 CA MSE A 1 49.162 4.365 29.953 1.00 24.71 C HETATM 3 C MSE A 1 48.113 4.855 30.936 1.00 23.36 C HETATM 4 O MSE A 1 46.916 4.818 30.626 1.00 22.55 O HETATM 5 CB MSE A 1 49.311 5.367 28.822 1.00 25.68 C HETATM 6 CG MSE A 1 49.855 6.703 29.270 1.00 28.09 C HETATM 7 SE MSE A 1 49.894 8.053 27.898 1.00 36.51 SE HETATM 8 CE MSE A 1 48.012 8.409 27.624 1.00 31.73 C