HEADER HYDROLASE 13-OCT-05 2C40 TITLE CRYSTAL STRUCTURE OF INOSINE-URIDINE PREFERRING NUCLEOSIDE HYDROLASE TITLE 2 FROM BACILLUS ANTHRACIS AT 2.2A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: INOSINE-URIDINE PREFERRING NUCLEOSIDE HYDROLASE FAMILY COMPND 3 PROTEIN; COMPND 4 CHAIN: A, B; COMPND 5 EC: 3.2.2.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS ANTHRACIS; SOURCE 3 ORGANISM_TAXID: 198094; SOURCE 4 STRAIN: AMES; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-YSBLIC KEYWDS HYDROLASE, NUCLEOSIDE HYDROLASE, SPINE EXPDTA X-RAY DIFFRACTION AUTHOR O.V.MOROZ,E.V.BLAGOVA,M.J.FOGG,V.M.LEVDIKOV,J.A.BRANNIGAN, AUTHOR 2 A.J.WILKINSON,K.S.WILSON REVDAT 5 13-DEC-23 2C40 1 HETSYN REVDAT 4 29-JUL-20 2C40 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 13-JUL-11 2C40 1 VERSN REVDAT 2 24-FEB-09 2C40 1 VERSN REVDAT 1 27-FEB-07 2C40 0 JRNL AUTH O.V.MOROZ,E.V.BLAGOVA,M.J.FOGG,V.M.LEVDIKOV,J.A.BRANNIGAN, JRNL AUTH 2 A.J.WILKINSON,K.S.WILSON JRNL TITL CRYSTAL STRUCTURE OF INOSINE-URIDINE PREFERRING NUCLEOSIDE JRNL TITL 2 HYDROLASE FROM BACILLUS ANTHRACIS AT 2.2A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 67.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 35505 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1867 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2584 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 115 REMARK 3 BIN FREE R VALUE : 0.3130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4691 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 125 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.67000 REMARK 3 B22 (A**2) : 0.67000 REMARK 3 B33 (A**2) : -1.00000 REMARK 3 B12 (A**2) : 0.33000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.253 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.201 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.180 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.306 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4867 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4421 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6653 ; 1.781 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10205 ; 1.004 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 606 ; 6.830 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 211 ;37.696 ;23.555 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 748 ;18.910 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;17.149 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 764 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5422 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1000 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1117 ; 0.215 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4766 ; 0.190 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2367 ; 0.179 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2879 ; 0.095 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 118 ; 0.202 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 33 ; 0.339 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 104 ; 0.297 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 32 ; 0.209 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3109 ; 0.655 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4896 ; 1.068 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2034 ; 1.941 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1757 ; 2.789 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 312 3 REMARK 3 1 B 1 B 312 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 1747 ; 0.06 ; 0.05 REMARK 3 LOOSE POSITIONAL 1 A (A): 2689 ; 0.46 ; 5.00 REMARK 3 TIGHT THERMAL 1 A (A**2): 1747 ; 0.16 ; 0.50 REMARK 3 LOOSE THERMAL 1 A (A**2): 2689 ; 1.11 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 310 REMARK 3 ORIGIN FOR THE GROUP (A): 15.7654 -28.5839 -10.5477 REMARK 3 T TENSOR REMARK 3 T11: -0.0618 T22: -0.1402 REMARK 3 T33: -0.1619 T12: 0.0418 REMARK 3 T13: -0.1274 T23: 0.0243 REMARK 3 L TENSOR REMARK 3 L11: 1.6277 L22: 1.2797 REMARK 3 L33: 1.4551 L12: 0.3639 REMARK 3 L13: 0.0969 L23: -0.2736 REMARK 3 S TENSOR REMARK 3 S11: 0.0392 S12: -0.2670 S13: -0.1899 REMARK 3 S21: 0.0683 S22: -0.1164 S23: -0.0544 REMARK 3 S31: -0.0264 S32: -0.1245 S33: 0.0772 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 310 REMARK 3 ORIGIN FOR THE GROUP (A): -14.9849 -21.2539 -36.1009 REMARK 3 T TENSOR REMARK 3 T11: -0.0886 T22: -0.0642 REMARK 3 T33: -0.0137 T12: 0.1793 REMARK 3 T13: -0.1946 T23: -0.1864 REMARK 3 L TENSOR REMARK 3 L11: 2.5081 L22: 1.7502 REMARK 3 L33: 2.3851 L12: -0.0929 REMARK 3 L13: 0.0715 L23: -0.5922 REMARK 3 S TENSOR REMARK 3 S11: 0.0291 S12: -0.1480 S13: 0.0478 REMARK 3 S21: -0.1184 S22: -0.1112 S23: 0.3773 REMARK 3 S31: -0.2470 S32: -0.4208 S33: 0.0821 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2C40 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-OCT-05. REMARK 100 THE DEPOSITION ID IS D_1290025977. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-SEP-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9798 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37372 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 24.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.60000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.020 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1HOZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG 3350, 0.2 M NACL, TRIS-HCL PH REMARK 280 8.5, PH 8.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 135.75067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 67.87533 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 67.87533 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 135.75067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 235 REMARK 465 HIS A 236 REMARK 465 PHE A 237 REMARK 465 ALA A 238 REMARK 465 LYS A 239 REMARK 465 ASN A 240 REMARK 465 SER A 241 REMARK 465 THR A 242 REMARK 465 SER A 311 REMARK 465 THR A 312 REMARK 465 LEU B 234 REMARK 465 VAL B 235 REMARK 465 HIS B 236 REMARK 465 PHE B 237 REMARK 465 ALA B 238 REMARK 465 LYS B 239 REMARK 465 ASN B 240 REMARK 465 SER B 241 REMARK 465 THR B 242 REMARK 465 TYR B 243 REMARK 465 SER B 311 REMARK 465 THR B 312 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 3 CD CE NZ REMARK 470 LYS A 57 CG CD CE NZ REMARK 470 ASN A 58 CG OD1 ND2 REMARK 470 ASP A 76 CG OD1 OD2 REMARK 470 LYS A 95 CD CE NZ REMARK 470 LYS A 103 CG CD CE NZ REMARK 470 GLU A 111 CD OE1 OE2 REMARK 470 GLN A 115 CG CD OE1 NE2 REMARK 470 GLU A 117 CG CD OE1 OE2 REMARK 470 GLU A 118 CD OE1 OE2 REMARK 470 LYS A 146 CE NZ REMARK 470 ASP A 207 CG OD1 OD2 REMARK 470 GLN A 211 CG CD OE1 NE2 REMARK 470 LYS A 214 CG CD CE NZ REMARK 470 TYR A 272 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP A 284 CG OD1 OD2 REMARK 470 LYS A 309 O REMARK 470 LYS B 3 CD CE NZ REMARK 470 LYS B 57 CG CD CE NZ REMARK 470 ASN B 58 CB CG OD1 ND2 REMARK 470 ASP B 76 CG OD1 OD2 REMARK 470 LYS B 95 CG CD CE NZ REMARK 470 GLN B 115 CG CD OE1 NE2 REMARK 470 LYS B 146 CE NZ REMARK 470 ARG B 183 CD NE CZ NH1 NH2 REMARK 470 ASN B 200 CG OD1 ND2 REMARK 470 ASP B 207 CG OD1 OD2 REMARK 470 GLN B 211 CG CD OE1 NE2 REMARK 470 LYS B 214 CB CG CD CE NZ REMARK 470 LYS B 217 CG CD CE NZ REMARK 470 ILE B 265 CG1 CG2 CD1 REMARK 470 ASP B 284 CG OD1 OD2 REMARK 470 ASP B 301 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 288 CB VAL A 288 CG1 -0.127 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 276 CB - CA - C ANGL. DEV. = -13.3 DEGREES REMARK 500 ARG A 286 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 286 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ASN B 26 N - CA - CB ANGL. DEV. = -12.8 DEGREES REMARK 500 ASP B 293 CB - CG - OD1 ANGL. DEV. = -5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 37 -80.60 -98.41 REMARK 500 ASP A 38 36.63 -86.36 REMARK 500 LYS A 57 -84.26 -115.04 REMARK 500 GLU A 165 -1.09 69.07 REMARK 500 ASP A 177 85.89 -156.10 REMARK 500 ALA B 37 -81.30 -100.58 REMARK 500 ASP B 38 34.42 -86.44 REMARK 500 LYS B 57 -87.76 -115.55 REMARK 500 GLU B 165 -9.95 72.16 REMARK 500 ASP B 177 84.57 -155.84 REMARK 500 LEU B 245 65.92 -102.54 REMARK 500 LYS B 256 77.06 -151.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 RIB A 1312 REMARK 610 RIB B 1312 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1311 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 9 OD2 REMARK 620 2 ASP A 14 OD2 76.8 REMARK 620 3 ASP A 14 OD1 75.5 48.8 REMARK 620 4 THR A 125 O 95.2 126.3 77.6 REMARK 620 5 ASP A 247 OD2 152.1 79.4 77.9 87.1 REMARK 620 6 RIB A1312 O2 108.1 82.6 129.9 147.1 82.9 REMARK 620 7 RIB A1312 O3 137.8 143.2 135.7 72.0 69.3 75.1 REMARK 620 8 HOH A2050 O 70.6 133.3 142.4 89.7 137.3 77.0 69.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1311 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 9 OD2 REMARK 620 2 ASP B 14 OD2 76.3 REMARK 620 3 ASP B 14 OD1 76.4 49.6 REMARK 620 4 THR B 125 O 94.5 137.4 87.9 REMARK 620 5 ASP B 247 OD2 144.2 75.2 68.8 92.2 REMARK 620 6 RIB B1312 O2 104.9 80.0 128.5 141.6 90.9 REMARK 620 7 RIB B1312 O3 139.6 140.6 136.0 68.9 75.2 75.0 REMARK 620 8 HOH B2002 O 64.9 120.9 140.9 89.9 150.3 69.9 78.0 REMARK 620 N 1 2 3 4 5 6 7 DBREF 2C40 A 1 312 UNP Q81QM4 Q81QM4_BACAN 1 312 DBREF 2C40 B 1 312 UNP Q81QM4 Q81QM4_BACAN 1 312 SEQRES 1 A 312 MET LYS LYS VAL TYR PHE ASN HIS ASP GLY GLY VAL ASP SEQRES 2 A 312 ASP LEU VAL SER LEU PHE LEU LEU LEU GLN MET ASP ASN SEQRES 3 A 312 VAL GLU LEU THR GLY VAL SER VAL ILE PRO ALA ASP CYS SEQRES 4 A 312 TYR LEU GLU PRO ALA MET SER ALA SER ARG LYS ILE ILE SEQRES 5 A 312 ASP ARG PHE GLY LYS ASN THR ILE GLU VAL ALA ALA SER SEQRES 6 A 312 ASN SER ARG GLY LYS ASN PRO PHE PRO LYS ASP TRP ARG SEQRES 7 A 312 MET HIS ALA PHE TYR VAL ASP ALA LEU PRO ILE LEU ASN SEQRES 8 A 312 GLU SER GLY LYS VAL VAL THR HIS VAL ALA ALA LYS PRO SEQRES 9 A 312 ALA HIS HIS HIS LEU ILE GLU THR LEU LEU GLN THR GLU SEQRES 10 A 312 GLU LYS THR THR LEU LEU PHE THR GLY PRO LEU THR ASP SEQRES 11 A 312 LEU ALA ARG ALA LEU TYR GLU ALA PRO ILE ILE GLU ASN SEQRES 12 A 312 LYS ILE LYS ARG LEU VAL TRP MET GLY GLY THR PHE ARG SEQRES 13 A 312 THR ALA GLY ASN VAL HIS GLU PRO GLU HIS ASP GLY THR SEQRES 14 A 312 ALA GLU TRP ASN SER PHE TRP ASP PRO GLU ALA VAL ALA SEQRES 15 A 312 ARG VAL TRP GLU ALA ASN ILE GLU ILE ASP LEU ILE THR SEQRES 16 A 312 LEU GLU SER THR ASN GLN VAL PRO LEU THR ILE ASP ILE SEQRES 17 A 312 ARG GLU GLN TRP ALA LYS GLU ARG LYS TYR ILE GLY ILE SEQRES 18 A 312 ASP PHE LEU GLY GLN CYS TYR ALA ILE VAL PRO PRO LEU SEQRES 19 A 312 VAL HIS PHE ALA LYS ASN SER THR TYR TYR LEU TRP ASP SEQRES 20 A 312 VAL LEU THR ALA ALA PHE VAL GLY LYS ALA ASP LEU ALA SEQRES 21 A 312 LYS VAL GLN THR ILE ASN SER ILE VAL HIS THR TYR GLY SEQRES 22 A 312 PRO SER GLN GLY ARG THR VAL GLU THR ASP ASP GLY ARG SEQRES 23 A 312 PRO VAL HIS VAL VAL TYR ASP VAL ASN HIS ASP ARG PHE SEQRES 24 A 312 PHE ASP TYR ILE THR ARG LEU ALA LYS LYS VAL SER THR SEQRES 1 B 312 MET LYS LYS VAL TYR PHE ASN HIS ASP GLY GLY VAL ASP SEQRES 2 B 312 ASP LEU VAL SER LEU PHE LEU LEU LEU GLN MET ASP ASN SEQRES 3 B 312 VAL GLU LEU THR GLY VAL SER VAL ILE PRO ALA ASP CYS SEQRES 4 B 312 TYR LEU GLU PRO ALA MET SER ALA SER ARG LYS ILE ILE SEQRES 5 B 312 ASP ARG PHE GLY LYS ASN THR ILE GLU VAL ALA ALA SER SEQRES 6 B 312 ASN SER ARG GLY LYS ASN PRO PHE PRO LYS ASP TRP ARG SEQRES 7 B 312 MET HIS ALA PHE TYR VAL ASP ALA LEU PRO ILE LEU ASN SEQRES 8 B 312 GLU SER GLY LYS VAL VAL THR HIS VAL ALA ALA LYS PRO SEQRES 9 B 312 ALA HIS HIS HIS LEU ILE GLU THR LEU LEU GLN THR GLU SEQRES 10 B 312 GLU LYS THR THR LEU LEU PHE THR GLY PRO LEU THR ASP SEQRES 11 B 312 LEU ALA ARG ALA LEU TYR GLU ALA PRO ILE ILE GLU ASN SEQRES 12 B 312 LYS ILE LYS ARG LEU VAL TRP MET GLY GLY THR PHE ARG SEQRES 13 B 312 THR ALA GLY ASN VAL HIS GLU PRO GLU HIS ASP GLY THR SEQRES 14 B 312 ALA GLU TRP ASN SER PHE TRP ASP PRO GLU ALA VAL ALA SEQRES 15 B 312 ARG VAL TRP GLU ALA ASN ILE GLU ILE ASP LEU ILE THR SEQRES 16 B 312 LEU GLU SER THR ASN GLN VAL PRO LEU THR ILE ASP ILE SEQRES 17 B 312 ARG GLU GLN TRP ALA LYS GLU ARG LYS TYR ILE GLY ILE SEQRES 18 B 312 ASP PHE LEU GLY GLN CYS TYR ALA ILE VAL PRO PRO LEU SEQRES 19 B 312 VAL HIS PHE ALA LYS ASN SER THR TYR TYR LEU TRP ASP SEQRES 20 B 312 VAL LEU THR ALA ALA PHE VAL GLY LYS ALA ASP LEU ALA SEQRES 21 B 312 LYS VAL GLN THR ILE ASN SER ILE VAL HIS THR TYR GLY SEQRES 22 B 312 PRO SER GLN GLY ARG THR VAL GLU THR ASP ASP GLY ARG SEQRES 23 B 312 PRO VAL HIS VAL VAL TYR ASP VAL ASN HIS ASP ARG PHE SEQRES 24 B 312 PHE ASP TYR ILE THR ARG LEU ALA LYS LYS VAL SER THR HET CA A1311 1 HET RIB A1312 9 HET CA B1311 1 HET RIB B1312 9 HETNAM CA CALCIUM ION HETNAM RIB ALPHA-D-RIBOFURANOSE HETSYN RIB ALPHA-D-RIBOSE; D-RIBOSE; RIBOSE FORMUL 3 CA 2(CA 2+) FORMUL 4 RIB 2(C5 H10 O5) FORMUL 7 HOH *125(H2 O) HELIX 1 1 GLY A 11 LEU A 22 1 12 HELIX 2 2 TYR A 40 GLY A 56 1 17 HELIX 3 3 PRO A 74 MET A 79 1 6 HELIX 4 4 MET A 79 ALA A 86 1 8 HELIX 5 5 LEU A 87 GLU A 92 1 6 HELIX 6 6 PRO A 104 THR A 116 1 13 HELIX 7 7 LEU A 128 ALA A 138 1 11 HELIX 8 8 PRO A 139 ASN A 143 5 5 HELIX 9 9 GLU A 171 ASP A 177 1 7 HELIX 10 10 ASP A 177 ALA A 187 1 11 HELIX 11 11 THR A 195 ASN A 200 5 6 HELIX 12 12 THR A 205 GLU A 215 1 11 HELIX 13 13 TYR A 218 ILE A 230 1 13 HELIX 14 14 LEU A 245 LYS A 256 1 12 HELIX 15 15 ALA A 257 ALA A 260 5 4 HELIX 16 16 ASN A 295 LYS A 308 1 14 HELIX 17 17 GLY B 11 LEU B 22 1 12 HELIX 18 18 TYR B 40 GLY B 56 1 17 HELIX 19 19 PRO B 74 MET B 79 1 6 HELIX 20 20 MET B 79 ALA B 86 1 8 HELIX 21 21 LEU B 87 GLU B 92 1 6 HELIX 22 22 PRO B 104 THR B 116 1 13 HELIX 23 23 LEU B 128 ALA B 138 1 11 HELIX 24 24 PRO B 139 ASN B 143 5 5 HELIX 25 25 GLU B 171 TRP B 176 1 6 HELIX 26 26 ASP B 177 ALA B 187 1 11 HELIX 27 27 THR B 195 ASN B 200 5 6 HELIX 28 28 THR B 205 GLU B 215 1 11 HELIX 29 29 TYR B 218 ILE B 230 1 13 HELIX 30 30 LEU B 245 LYS B 256 1 12 HELIX 31 31 ALA B 257 ALA B 260 5 4 HELIX 32 32 ASN B 295 LYS B 309 1 15 SHEET 1 AA 9 VAL A 62 ALA A 64 0 SHEET 2 AA 9 VAL A 27 VAL A 34 1 O VAL A 32 N ALA A 63 SHEET 3 AA 9 LYS A 2 HIS A 8 1 O LYS A 2 N GLU A 28 SHEET 4 AA 9 THR A 120 PHE A 124 1 O THR A 121 N TYR A 5 SHEET 5 AA 9 ILE A 145 MET A 151 1 N LYS A 146 O THR A 120 SHEET 6 AA 9 ILE A 191 ILE A 194 1 O ASP A 192 N TRP A 150 SHEET 7 AA 9 ARG A 286 TYR A 292 1 O HIS A 289 N LEU A 193 SHEET 8 AA 9 LYS A 261 VAL A 269 -1 O LYS A 261 N TYR A 292 SHEET 9 AA 9 THR A 279 GLU A 281 -1 O VAL A 280 N ILE A 268 SHEET 1 BA 9 VAL B 62 ALA B 64 0 SHEET 2 BA 9 VAL B 27 VAL B 34 1 O VAL B 32 N ALA B 63 SHEET 3 BA 9 LYS B 2 HIS B 8 1 O LYS B 2 N GLU B 28 SHEET 4 BA 9 THR B 120 PHE B 124 1 O THR B 121 N TYR B 5 SHEET 5 BA 9 ILE B 145 MET B 151 1 N LYS B 146 O THR B 120 SHEET 6 BA 9 ILE B 191 ILE B 194 1 O ASP B 192 N TRP B 150 SHEET 7 BA 9 ARG B 286 TYR B 292 1 O HIS B 289 N LEU B 193 SHEET 8 BA 9 LYS B 261 VAL B 269 -1 O LYS B 261 N TYR B 292 SHEET 9 BA 9 THR B 279 GLU B 281 -1 O VAL B 280 N ILE B 268 LINK OD2 ASP A 9 CA CA A1311 1555 1555 2.34 LINK OD2 ASP A 14 CA CA A1311 1555 1555 2.41 LINK OD1 ASP A 14 CA CA A1311 1555 1555 2.83 LINK O THR A 125 CA CA A1311 1555 1555 2.52 LINK OD2 ASP A 247 CA CA A1311 1555 1555 2.47 LINK CA CA A1311 O2 RIB A1312 1555 1555 2.42 LINK CA CA A1311 O3 RIB A1312 1555 1555 2.68 LINK CA CA A1311 O HOH A2050 1555 1555 2.47 LINK OD2 ASP B 9 CA CA B1311 1555 1555 2.43 LINK OD2 ASP B 14 CA CA B1311 1555 1555 2.70 LINK OD1 ASP B 14 CA CA B1311 1555 1555 2.33 LINK O THR B 125 CA CA B1311 1555 1555 2.51 LINK OD2 ASP B 247 CA CA B1311 1555 1555 2.44 LINK CA CA B1311 O2 RIB B1312 1555 1555 2.57 LINK CA CA B1311 O3 RIB B1312 1555 1555 2.54 LINK CA CA B1311 O HOH B2002 1555 1555 1.94 CRYST1 78.154 78.154 203.626 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012795 0.007387 0.000000 0.00000 SCALE2 0.000000 0.014775 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004911 0.00000