HEADER VIRAL PROTEIN 25-OCT-05 2C55 TITLE SOLUTION STRUCTURE OF THE HUMAN IMMUNODEFICIENCY VIRUS TYPE TITLE 2 1 P6 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN P6; COMPND 3 CHAIN: A; COMPND 4 OTHER_DETAILS: P6 SEQUENCE DERIVED FROM THE ISOLATE HIV- COMPND 5 1NL4-3 SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1; SOURCE 4 ORGANISM_COMMON: HIV-1; SOURCE 5 ORGANISM_TAXID: 11676; SOURCE 6 OTHER_DETAILS: P6 SEQUENCE DERIVED FROM THE ISOLATE HIV- SOURCE 7 1NL4-3 KEYWDS P6, HIV-1, P6-GAG, AIDS, CORE PROTEIN, LIPOPROTEIN, KEYWDS 2 MEMBRANE, METAL-BINDING, MYRISTATE, PHOSPHORYLATION, KEYWDS 3 POLYPROTEIN, RNA-BINDING, VIRAL NUCLEOPROTEIN, ZINC, ZINC- KEYWDS 4 FINGER, VIRAL PROTEIN EXPDTA SOLUTION NMR MDLTYP MINIMIZED AVERAGE AUTHOR T.FOSSEN,V.WRAY,K.BRUNS,J.RACHMAT,P.HENKLEIN,U.TESSMER, AUTHOR 2 A.MACZUREK,P.KLINGER,U.SCHUBERT REVDAT 3 24-FEB-09 2C55 1 VERSN REVDAT 2 04-JAN-06 2C55 1 JRNL REVDAT 1 02-NOV-05 2C55 0 JRNL AUTH T.FOSSEN,V.WRAY,K.BRUNS,J.RACHMAT,P.HENKLEIN, JRNL AUTH 2 U.TESSMER,A.MACZUREK,P.KLINGER,U.SCHUBERT JRNL TITL SOLUTION STRUCTURE OF THE HUMAN IMMUNODEFICIENCY JRNL TITL 2 VIRUS TYPE 1 P6 PROTEIN. JRNL REF J.BIOL.CHEM. V. 280 42515 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 16234236 JRNL DOI 10.1074/JBC.M507375200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS, GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, REMARK 3 RICE,SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN REMARK 3 THE JRNL CITATION ABOVE REMARK 4 REMARK 4 2C55 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-OCT-05. REMARK 100 THE PDBE ID CODE IS EBI-26163. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300.0 REMARK 210 PH : 3.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1.0 REMARK 210 SAMPLE CONTENTS : 50% WATER/50% TFE-D2 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY, TOCSY; COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS 1.0 REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 104 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NONE REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 400 REMARK 400 COMPOUND REMARK 400 PARTICIPATES IN BUDDING OF THE ASSEMBLED PARTICLE BY REMARK 400 INTERACTING WITH TSG101 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 16 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 3 -169.25 -103.10 REMARK 500 ALA A 9 132.59 63.31 REMARK 500 PRO A 10 87.61 -21.75 REMARK 500 PRO A 11 58.48 -93.27 REMARK 500 THR A 21 40.48 -97.67 REMARK 500 LYS A 27 160.70 59.94 REMARK 500 GLN A 28 173.44 58.54 REMARK 500 ASP A 32 33.35 -140.48 REMARK 500 LYS A 33 -54.54 -135.00 REMARK 500 SER A 47 39.05 -145.83 REMARK 500 SER A 50 88.39 -63.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 P6 SEQUENCE DERIVED FROM THE ISOLATE HIV-1NL4-3 DBREF 2C55 A 1 52 UNP P12493 GAG_HV1N5 448 499 SEQRES 1 A 52 LEU GLN SER ARG PRO GLU PRO THR ALA PRO PRO GLU GLU SEQRES 2 A 52 SER PHE ARG PHE GLY GLU GLU THR THR THR PRO SER GLN SEQRES 3 A 52 LYS GLN GLU PRO ILE ASP LYS GLU LEU TYR PRO LEU ALA SEQRES 4 A 52 SER LEU ARG SER LEU PHE GLY SER ASP PRO SER SER GLN HELIX 1 1 PHE A 17 THR A 21 5 5 HELIX 2 2 LEU A 38 SER A 43 5 6 HELIX 3 3 SER A 43 SER A 47 5 5 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000