HEADER RNA BINDING PROTEIN 01-NOV-05 2C5S TITLE CRYSTAL STRUCTURE OF BACILLUS ANTHRACIS THII, A TRNA-MODIFYING ENZYME TITLE 2 CONTAINING THE PREDICTED RNA-BINDING THUMP DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE THIAMINE BIOSYNTHESIS PROTEIN THII; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: THII; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS ANTHRACIS; SOURCE 3 ORGANISM_TAXID: 198094; SOURCE 4 STRAIN: AMES; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21/B834; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: YSBLIC (MODIFIED PET-28A); SOURCE 9 OTHER_DETAILS: GENOMIC DNA PROVIDED BY PROFESSOR COLIN HARWOOD SOURCE 10 (UNIVERSITY OF NEWCASTLE UPON TYNE, UK) KEYWDS RNA-BINDING PROTEIN, RNA BINDING PROTEIN, TRNA MODIFICATION, 4- KEYWDS 2 THIOURIDINE SYNTHASE, FERREDOXIN-LIKE DOMAIN, THUMP DOMAIN, PP-LOOP KEYWDS 3 PYROPHOSPHATASE DOMAIN, THIAMINE BIOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR D.G.WATERMAN,M.ORTIZ-LOMBARDIA,M.J.FOGG,E.V.KOONIN,A.A.ANTSON REVDAT 7 08-MAY-24 2C5S 1 REMARK REVDAT 6 02-OCT-19 2C5S 1 JRNL REMARK REVDAT 5 13-JUL-11 2C5S 1 VERSN REVDAT 4 24-FEB-09 2C5S 1 VERSN REVDAT 3 04-SEP-07 2C5S 1 REMARK REVDAT 2 18-JAN-06 2C5S 1 JRNL REVDAT 1 30-NOV-05 2C5S 0 JRNL AUTH D.G.WATERMAN,M.ORTIZ-LOMBARDIA,M.J.FOGG,E.V.KOONIN, JRNL AUTH 2 A.A.ANTSON JRNL TITL CRYSTAL STRUCTURE OF BACILLUS ANTHRACIS THII, A JRNL TITL 2 TRNA-MODIFYING ENZYME CONTAINING THE PREDICTED RNA-BINDING JRNL TITL 3 THUMP DOMAIN. JRNL REF J.MOL.BIOL. V. 356 97 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16343540 JRNL DOI 10.1016/J.JMB.2005.11.013 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 17240 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 915 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1023 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3220 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.3890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2964 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 50 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.48000 REMARK 3 B22 (A**2) : 2.48000 REMARK 3 B33 (A**2) : -3.72000 REMARK 3 B12 (A**2) : 1.24000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.448 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.299 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.233 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.628 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3040 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4098 ; 1.191 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 369 ; 5.824 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 130 ;35.912 ;23.846 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 581 ;16.835 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;16.510 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 469 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2209 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1315 ; 0.201 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2022 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 130 ; 0.132 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 22 ; 0.164 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.214 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1909 ; 0.716 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3018 ; 1.225 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1258 ; 2.954 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1080 ; 4.586 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 77 REMARK 3 RESIDUE RANGE : A 164 A 171 REMARK 3 ORIGIN FOR THE GROUP (A): 29.6200 39.4660 96.1220 REMARK 3 T TENSOR REMARK 3 T11: -0.0265 T22: 0.0447 REMARK 3 T33: -0.0404 T12: 0.0791 REMARK 3 T13: 0.0070 T23: 0.1108 REMARK 3 L TENSOR REMARK 3 L11: 6.2309 L22: 15.9972 REMARK 3 L33: 9.2568 L12: 0.9975 REMARK 3 L13: -0.0288 L23: -4.8725 REMARK 3 S TENSOR REMARK 3 S11: -0.1154 S12: -0.2872 S13: -0.5804 REMARK 3 S21: 1.1278 S22: 0.1765 S23: -0.0127 REMARK 3 S31: 0.1426 S32: 0.1521 S33: -0.0610 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 78 A 163 REMARK 3 ORIGIN FOR THE GROUP (A): 29.1770 16.6550 97.5790 REMARK 3 T TENSOR REMARK 3 T11: 0.1302 T22: 0.1872 REMARK 3 T33: 0.2612 T12: 0.0192 REMARK 3 T13: 0.0240 T23: 0.2618 REMARK 3 L TENSOR REMARK 3 L11: 17.8857 L22: 9.3053 REMARK 3 L33: 5.1551 L12: 4.9048 REMARK 3 L13: 1.3328 L23: 1.3926 REMARK 3 S TENSOR REMARK 3 S11: -0.1189 S12: 0.5476 S13: -0.8608 REMARK 3 S21: -0.4121 S22: 0.0491 S23: -0.4386 REMARK 3 S31: 0.3038 S32: -0.1506 S33: 0.0699 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 172 A 413 REMARK 3 ORIGIN FOR THE GROUP (A): 24.1660 65.5920 77.3290 REMARK 3 T TENSOR REMARK 3 T11: -0.1846 T22: -0.0436 REMARK 3 T33: -0.1057 T12: 0.0520 REMARK 3 T13: -0.0503 T23: -0.0699 REMARK 3 L TENSOR REMARK 3 L11: 2.0802 L22: 3.1093 REMARK 3 L33: 2.8269 L12: 0.3056 REMARK 3 L13: -1.0029 L23: -0.3316 REMARK 3 S TENSOR REMARK 3 S11: 0.0992 S12: -0.0019 S13: 0.1198 REMARK 3 S21: -0.1682 S22: -0.1537 S23: 0.3696 REMARK 3 S31: -0.3328 S32: -0.4152 S33: 0.0545 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. RESIDUES 14 TO 16 AND 342 TO 355 ARE DISORDERED AND REMARK 3 NOT BUILT INTO THE MODEL REMARK 4 REMARK 4 2C5S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-NOV-05. REMARK 100 THE DEPOSITION ID IS D_1290026139. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00798, 0.97788, 0.97788, REMARK 200 0.95372 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18357 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 8.500 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.57000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.92867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.96433 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 46.96433 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 93.92867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 3260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 140.89300 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2041 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -9 REMARK 465 GLY A -8 REMARK 465 SER A -7 REMARK 465 SER A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 THR A 14 REMARK 465 THR A 15 REMARK 465 LYS A 16 REMARK 465 GLU A 342 REMARK 465 ASP A 343 REMARK 465 CYS A 344 REMARK 465 CYS A 345 REMARK 465 THR A 346 REMARK 465 VAL A 347 REMARK 465 PHE A 348 REMARK 465 THR A 349 REMARK 465 PRO A 350 REMARK 465 ALA A 351 REMARK 465 SER A 352 REMARK 465 PRO A 353 REMARK 465 ALA A 354 REMARK 465 THR A 355 REMARK 465 VAL A 392 REMARK 465 VAL A 393 REMARK 465 ALA A 394 REMARK 465 GLU A 395 REMARK 465 GLU A 396 REMARK 465 GLU A 397 REMARK 465 LYS A 398 REMARK 465 PHE A 399 REMARK 465 GLU A 400 REMARK 465 GLU A 401 REMARK 465 LEU A 402 REMARK 465 PHE A 403 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 38 72.86 -114.43 REMARK 500 PRO A 82 153.51 -49.40 REMARK 500 SER A 83 60.57 -104.00 REMARK 500 ASP A 102 83.99 -64.42 REMARK 500 LYS A 104 -30.92 -133.52 REMARK 500 GLU A 137 -80.52 -102.68 REMARK 500 ASP A 138 61.64 -103.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A1392 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THERE IS AN ADDITIONAL 10 RESIDUE N TERMINAL TAG ON THE REMARK 999 RECOMBINANT PROTEIN DBREF 2C5S A -9 0 PDB 2C5S 2C5S -9 0 DBREF 2C5S A 1 403 UNP Q81KU0 THII_BACAN 1 403 SEQRES 1 A 413 MET GLY SER SER HIS HIS HIS HIS HIS HIS MET THR TYR SEQRES 2 A 413 GLU TYR ILE LEU VAL ARG TYR GLY GLU MET THR THR LYS SEQRES 3 A 413 GLY LYS ASN ARG SER LYS PHE VAL SER THR LEU LYS ASP SEQRES 4 A 413 ASN VAL LYS PHE LYS LEU LYS LYS PHE PRO ASN ILE LYS SEQRES 5 A 413 ILE ASP ALA THR HIS ASP ARG MET TYR ILE GLN LEU ASN SEQRES 6 A 413 GLY GLU ASP HIS GLU ALA VAL SER GLU ARG LEU LYS ASP SEQRES 7 A 413 VAL PHE GLY ILE HIS LYS PHE ASN LEU ALA MET LYS VAL SEQRES 8 A 413 PRO SER GLU LEU GLU ASP ILE LYS LYS GLY ALA LEU ALA SEQRES 9 A 413 ALA PHE LEU GLN VAL LYS GLY ASP VAL LYS THR PHE LYS SEQRES 10 A 413 ILE THR VAL HIS ARG SER TYR LYS HIS PHE PRO MET ARG SEQRES 11 A 413 THR MET GLU LEU LEU PRO GLU ILE GLY GLY HIS ILE LEU SEQRES 12 A 413 GLU ASN THR GLU ASP ILE THR VAL ASP VAL HIS ASN PRO SEQRES 13 A 413 ASP VAL ASN VAL ARG VAL GLU ILE ARG SER GLY TYR SER SEQRES 14 A 413 TYR ILE MET CYS ASP GLU ARG MET GLY ALA GLY GLY LEU SEQRES 15 A 413 PRO VAL GLY VAL GLY GLY LYS VAL MET VAL LEU LEU SER SEQRES 16 A 413 GLY GLY ILE ASP SER PRO VAL ALA ALA TYR LEU THR MET SEQRES 17 A 413 LYS ARG GLY VAL SER VAL GLU ALA VAL HIS PHE HIS SER SEQRES 18 A 413 PRO PRO PHE THR SER GLU ARG ALA LYS GLN LYS VAL ILE SEQRES 19 A 413 ASP LEU ALA GLN GLU LEU THR LYS TYR CYS LYS ARG VAL SEQRES 20 A 413 THR LEU HIS LEU VAL PRO PHE THR GLU VAL GLN LYS THR SEQRES 21 A 413 ILE ASN LYS GLU ILE PRO SER SER TYR SER MET THR VAL SEQRES 22 A 413 MET ARG ARG MET MET MET ARG ILE THR GLU ARG ILE ALA SEQRES 23 A 413 GLU GLU ARG ASN ALA LEU ALA ILE THR THR GLY GLU SER SEQRES 24 A 413 LEU GLY GLN VAL ALA SER GLN THR LEU ASP SER MET HIS SEQRES 25 A 413 THR ILE ASN GLU VAL THR ASN TYR PRO VAL ILE ARG PRO SEQRES 26 A 413 LEU ILE THR MET ASP LYS LEU GLU ILE ILE LYS ILE ALA SEQRES 27 A 413 GLU GLU ILE GLY THR TYR ASP ILE SER ILE ARG PRO TYR SEQRES 28 A 413 GLU ASP CYS CYS THR VAL PHE THR PRO ALA SER PRO ALA SEQRES 29 A 413 THR LYS PRO LYS ARG GLU LYS ALA ASN ARG PHE GLU ALA SEQRES 30 A 413 LYS TYR ASP PHE THR PRO LEU ILE ASP GLU ALA VAL ALA SEQRES 31 A 413 ASN LYS GLU THR MET VAL LEU GLN THR VAL GLU VAL VAL SEQRES 32 A 413 ALA GLU GLU GLU LYS PHE GLU GLU LEU PHE HET AMP A1392 23 HETNAM AMP ADENOSINE MONOPHOSPHATE FORMUL 2 AMP C10 H14 N5 O7 P FORMUL 3 HOH *50(H2 O) HELIX 1 1 GLY A 17 LEU A 35 1 19 HELIX 2 2 ASP A 58 LYS A 67 1 10 HELIX 3 3 GLU A 84 GLN A 98 1 15 HELIX 4 4 ARG A 120 GLU A 134 1 15 HELIX 5 5 ILE A 188 ARG A 200 1 13 HELIX 6 6 SER A 216 THR A 231 1 16 HELIX 7 7 LYS A 232 CYS A 234 5 3 HELIX 8 8 PHE A 244 ILE A 255 1 12 HELIX 9 9 PRO A 256 SER A 258 5 3 HELIX 10 10 TYR A 259 ARG A 279 1 21 HELIX 11 11 THR A 297 ASN A 305 1 9 HELIX 12 12 GLU A 306 THR A 308 5 3 HELIX 13 13 ASP A 320 ILE A 331 1 12 HELIX 14 14 THR A 333 ILE A 338 1 6 HELIX 15 15 LYS A 358 ALA A 367 1 10 HELIX 16 16 PHE A 371 LYS A 382 1 12 SHEET 1 AA 8 LYS A 42 ALA A 45 0 SHEET 2 AA 8 MET A 50 GLN A 53 -1 O TYR A 51 N ASP A 44 SHEET 3 AA 8 TYR A 5 TYR A 10 -1 O ILE A 6 N ILE A 52 SHEET 4 AA 8 ILE A 72 PRO A 82 -1 N HIS A 73 O ARG A 9 SHEET 5 AA 8 TYR A 158 MET A 167 -1 O SER A 159 N VAL A 81 SHEET 6 AA 8 VAL A 148 ILE A 154 -1 O ARG A 151 N MET A 162 SHEET 7 AA 8 THR A 105 ARG A 112 1 O THR A 105 N VAL A 148 SHEET 8 AA 8 THR A 140 VAL A 141 1 O THR A 140 N PHE A 106 SHEET 1 AB 6 VAL A 312 ILE A 313 0 SHEET 2 AB 6 ALA A 283 THR A 285 1 O ILE A 284 N ILE A 313 SHEET 3 AB 6 LYS A 179 LEU A 183 1 O MET A 181 N THR A 285 SHEET 4 AB 6 SER A 203 HIS A 210 1 O SER A 203 N VAL A 180 SHEET 5 AB 6 VAL A 237 PRO A 243 1 O THR A 238 N ALA A 206 SHEET 6 AB 6 GLU A 383 LEU A 387 -1 O GLU A 383 N LEU A 241 SITE 1 AC1 13 LEU A 183 LEU A 184 SER A 185 SER A 190 SITE 2 AC1 13 VAL A 207 HIS A 208 PHE A 209 ARG A 265 SITE 3 AC1 13 MET A 268 GLY A 287 GLN A 296 HOH A2017 SITE 4 AC1 13 HOH A2033 CRYST1 81.047 81.047 140.893 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012339 0.007124 0.000000 0.00000 SCALE2 0.000000 0.014247 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007098 0.00000