HEADER RECEPTOR 10-NOV-05 2C6J OBSLTE 08-MAR-17 2C6J 5X6N TITLE STRUCTURE OF P. KNOWLESI DBL DOMAIN CAPABLE OF BINDING HUMAN DUFFY TITLE 2 ANTIGEN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUFFY RECEPTOR, ALPHA FORM; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DUFFY BINDING DOMAIN, RESIDUES 200-536; COMPND 5 SYNONYM: ERYTHROCYTE BINDING PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM KNOWLESI; SOURCE 3 ORGANISM_TAXID: 5850; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: B834 KEYWDS RECEPTOR, DUFFY ANTIGEN, DBL DOMAIN, P.KNOWLESI, P.VIVAX, INVASION, KEYWDS 2 MALARIA EXPDTA X-RAY DIFFRACTION AUTHOR S.K.SINGH,R.HORA,H.BELRHALI,C.CHITNIS,A.SHARMA REVDAT 4 08-MAR-17 2C6J 1 REVDAT 3 24-FEB-09 2C6J 1 VERSN REVDAT 2 03-FEB-06 2C6J 1 JRNL REVDAT 1 04-JAN-06 2C6J 0 JRNL AUTH S.K.SINGH,R.HORA,H.BELRHALI,C.CHITNIS,A.SHARMA JRNL TITL STRUCTURAL BASIS FOR DUFFY RECOGNITION BY MALARIA PARASITE JRNL TITL 2 DUFFY-BINDING-LIKE DOMAIN JRNL REF NATURE V. 439 741 2006 JRNL REFN ISSN 0028-0836 JRNL PMID 16372020 JRNL DOI 10.1038/NATURE04443 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.5 REMARK 3 NUMBER OF REFLECTIONS : 8937 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.248 REMARK 3 FREE R VALUE : 0.312 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.800 REMARK 3 FREE R VALUE TEST SET COUNT : 556 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 20.00 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 70.86 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 659 REMARK 3 BIN R VALUE (WORKING SET) : 0.5100 REMARK 3 BIN FREE R VALUE : 0.6100 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 45 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2185 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 42 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -19.32700 REMARK 3 B22 (A**2) : -19.32700 REMARK 3 B33 (A**2) : 38.65500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.40 REMARK 3 ESD FROM SIGMAA (A) : 0.60 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.50 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.60 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.014 REMARK 3 BOND ANGLES (DEGREES) : 1.900 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 19.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.700 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.22 REMARK 3 BSOL : 29.13 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2C6J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-NOV-05. REMARK 100 THE PDBE ID CODE IS EBI-26327. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.88560 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9599 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 13.70 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 20.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 12.30 REMARK 200 R MERGE FOR SHELL (I) : 0.48000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH7.5, 12% PEG 10K, 0.1M REMARK 280 AMMONIUM SULFATE, 0.5% BETA-OCTYL GLUCOSIDE, PH 7.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 120.52450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 30.28600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 30.28600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 180.78675 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 30.28600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 30.28600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 60.26225 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 30.28600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 30.28600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 180.78675 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 30.28600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 30.28600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 60.26225 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 120.52450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 ILE A 3 REMARK 465 ASN A 4 REMARK 465 GLN A 5 REMARK 465 THR A 6 REMARK 465 PHE A 7 REMARK 465 LEU A 8 REMARK 465 GLN A 9 REMARK 465 ASN A 10 REMARK 465 ASN A 11 REMARK 465 VAL A 12 REMARK 465 MET A 13 REMARK 465 ASP A 14 REMARK 465 VAL A 53 REMARK 465 ASN A 54 REMARK 465 ASN A 55 REMARK 465 THR A 56 REMARK 465 ARG A 57 REMARK 465 THR A 58 REMARK 465 HIS A 59 REMARK 465 SER A 60 REMARK 465 HIS A 61 REMARK 465 ASN A 62 REMARK 465 ASP A 63 REMARK 465 ILE A 121 REMARK 465 GLY A 122 REMARK 465 TYR A 123 REMARK 465 SER A 124 REMARK 465 GLN A 125 REMARK 465 VAL A 126 REMARK 465 THR A 181 REMARK 465 LEU A 182 REMARK 465 LYS A 183 REMARK 465 VAL A 184 REMARK 465 GLU A 185 REMARK 465 GLN A 263 REMARK 465 LYS A 264 REMARK 465 ILE A 265 REMARK 465 GLY A 266 REMARK 465 THR A 267 REMARK 465 GLU A 268 REMARK 465 GLU A 309 REMARK 465 GLU A 310 REMARK 465 ALA A 311 REMARK 465 ARG A 312 REMARK 465 LYS A 313 REMARK 465 ASN A 314 REMARK 465 THR A 315 REMARK 465 GLN A 316 REMARK 465 GLU A 317 REMARK 465 ASN A 318 REMARK 465 VAL A 319 REMARK 465 LYS A 320 REMARK 465 ASN A 321 REMARK 465 VAL A 322 REMARK 465 GLY A 323 REMARK 465 SER A 324 REMARK 465 GLY A 325 REMARK 465 VAL A 326 REMARK 465 GLU A 327 REMARK 465 SER A 328 REMARK 465 LYS A 329 REMARK 465 ALA A 330 REMARK 465 ALA A 331 REMARK 465 SER A 332 REMARK 465 SER A 333 REMARK 465 ASN A 334 REMARK 465 PRO A 335 REMARK 465 ILE A 336 REMARK 465 THR A 337 REMARK 465 GLU A 338 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 52 CG CD1 CD2 REMARK 470 ILE A 64 CG1 CG2 CD1 REMARK 470 VAL A 127 CG1 CG2 REMARK 470 GLU A 128 CG CD OE1 OE2 REMARK 470 ASN A 129 CG OD1 ND2 REMARK 470 ASN A 130 CG OD1 ND2 REMARK 470 LEU A 131 CG CD1 CD2 REMARK 470 ARG A 132 CG CD NE CZ NH1 NH2 REMARK 470 SER A 133 OG REMARK 470 ILE A 134 CG1 CG2 CD1 REMARK 470 PHE A 135 CG CD1 CD2 CE1 CE2 CZ REMARK 470 THR A 137 OG1 CG2 REMARK 470 ASP A 138 CG OD1 OD2 REMARK 470 VAL A 308 CA C O CB CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU A 168 C LEU A 168 O -0.166 REMARK 500 LEU A 230 C LEU A 230 O -0.174 REMARK 500 CYS A 231 CB CYS A 231 SG -0.201 REMARK 500 GLY A 283 CA GLY A 283 C 0.099 REMARK 500 GLY A 283 C GLY A 283 O -0.114 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 34 CB - CA - C ANGL. DEV. = -26.5 DEGREES REMARK 500 LYS A 169 N - CA - C ANGL. DEV. = 25.9 DEGREES REMARK 500 CYS A 231 N - CA - CB ANGL. DEV. = 20.4 DEGREES REMARK 500 CYS A 231 CA - CB - SG ANGL. DEV. = 9.2 DEGREES REMARK 500 ASN A 282 CB - CG - OD1 ANGL. DEV. = -17.6 DEGREES REMARK 500 ASN A 282 CB - CG - ND2 ANGL. DEV. = 15.3 DEGREES REMARK 500 GLY A 283 N - CA - C ANGL. DEV. = 16.6 DEGREES REMARK 500 GLY A 283 O - C - N ANGL. DEV. = -21.5 DEGREES REMARK 500 PHE A 284 N - CA - CB ANGL. DEV. = -11.2 DEGREES REMARK 500 PHE A 284 N - CA - C ANGL. DEV. = 23.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 21 135.29 -37.26 REMARK 500 ARG A 22 97.97 -67.66 REMARK 500 TRP A 27 177.69 -50.05 REMARK 500 GLU A 32 4.57 -65.88 REMARK 500 LYS A 33 -175.70 51.54 REMARK 500 ASP A 34 15.56 58.81 REMARK 500 ILE A 35 165.75 160.52 REMARK 500 TYR A 42 -4.07 -57.45 REMARK 500 CYS A 45 92.40 -57.05 REMARK 500 LYS A 47 -81.81 -37.92 REMARK 500 GLU A 48 -32.01 -35.76 REMARK 500 THR A 50 29.36 -61.68 REMARK 500 ASN A 51 -58.23 -131.81 REMARK 500 MET A 114 7.15 -67.38 REMARK 500 THR A 116 49.65 -74.23 REMARK 500 ASN A 117 -131.83 -84.38 REMARK 500 MET A 118 -46.63 171.96 REMARK 500 GLU A 119 171.88 -44.14 REMARK 500 GLU A 128 -1.80 62.24 REMARK 500 THR A 137 11.14 -170.90 REMARK 500 GLU A 139 173.24 -37.16 REMARK 500 ASP A 144 34.03 -85.11 REMARK 500 GLU A 151 -84.87 -68.57 REMARK 500 SER A 152 46.05 -78.39 REMARK 500 LYS A 169 -47.53 -9.17 REMARK 500 TRP A 174 99.72 -47.57 REMARK 500 GLN A 187 111.44 95.76 REMARK 500 TYR A 189 26.53 -65.94 REMARK 500 CYS A 214 -40.37 -144.77 REMARK 500 ALA A 215 132.80 -39.42 REMARK 500 LYS A 217 156.03 -48.69 REMARK 500 LEU A 218 -7.01 -58.17 REMARK 500 ASN A 221 79.92 63.69 REMARK 500 PRO A 229 -77.91 -40.99 REMARK 500 LEU A 230 82.82 -69.62 REMARK 500 CYS A 231 -28.85 159.95 REMARK 500 LYS A 261 63.25 -69.24 REMARK 500 ILE A 270 75.85 58.03 REMARK 500 ALA A 271 97.34 152.01 REMARK 500 ALA A 273 -167.31 48.81 REMARK 500 TYR A 274 29.18 -76.38 REMARK 500 PHE A 284 -86.89 -20.70 REMARK 500 LYS A 285 104.69 70.09 REMARK 500 LYS A 295 19.29 59.12 REMARK 500 CYS A 304 103.45 -161.36 REMARK 500 CYS A 306 30.18 -75.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 274 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASP A 34 12.57 REMARK 500 LEU A 168 -20.37 REMARK 500 LEU A 230 15.13 REMARK 500 LEU A 281 -10.69 REMARK 500 GLY A 283 -28.40 REMARK 500 REMARK 500 REMARK: NULL DBREF 2C6J A 1 1 PDB 2C6J 2C6J 1 1 DBREF 2C6J A 2 338 UNP P22545 PVDA_PLAKN 200 536 SEQADV 2C6J ASP A 39 UNP P22545 VAL 237 CONFLICT SEQADV 2C6J GLU A 48 UNP P22545 GLY 246 CONFLICT SEQADV 2C6J SER A 133 UNP P22545 GLN 331 CONFLICT SEQADV 2C6J ILE A 134 UNP P22545 VAL 332 CONFLICT SEQRES 1 A 338 MET VAL ILE ASN GLN THR PHE LEU GLN ASN ASN VAL MET SEQRES 2 A 338 ASP LYS CYS ASN ASP LYS ARG LYS ARG GLY GLU ARG ASP SEQRES 3 A 338 TRP ASP CYS PRO ALA GLU LYS ASP ILE CYS ILE SER ASP SEQRES 4 A 338 ARG ARG TYR GLN LEU CYS MET LYS GLU LEU THR ASN LEU SEQRES 5 A 338 VAL ASN ASN THR ARG THR HIS SER HIS ASN ASP ILE THR SEQRES 6 A 338 PHE LEU LYS LEU ASN LEU LYS ARG LYS LEU MET TYR ASP SEQRES 7 A 338 ALA ALA VAL GLU GLY ASP LEU LEU LEU LYS LYS ASN ASN SEQRES 8 A 338 TYR GLN TYR ASN LYS GLU PHE CYS LYS ASP ILE ARG TRP SEQRES 9 A 338 GLY LEU GLY ASP PHE GLY ASP ILE ILE MET GLY THR ASN SEQRES 10 A 338 MET GLU GLY ILE GLY TYR SER GLN VAL VAL GLU ASN ASN SEQRES 11 A 338 LEU ARG SER ILE PHE GLY THR ASP GLU LYS ALA LYS GLN SEQRES 12 A 338 ASP ARG LYS GLN TRP TRP ASN GLU SER LYS GLU HIS ILE SEQRES 13 A 338 TRP ARG ALA MET MET PHE SER LEU ARG SER ARG LEU LYS SEQRES 14 A 338 GLU LYS PHE VAL TRP ILE CYS LYS LYS ASP VAL THR LEU SEQRES 15 A 338 LYS VAL GLU PRO GLN ILE TYR ARG TRP ILE ARG GLU TRP SEQRES 16 A 338 GLY ARG ASP TYR MET SER GLU LEU PRO LYS GLU GLN GLY SEQRES 17 A 338 LYS LEU ASN GLU LYS CYS ALA SER LYS LEU TYR TYR ASN SEQRES 18 A 338 ASN MET ALA ILE CYS MET LEU PRO LEU CYS HIS ASP ALA SEQRES 19 A 338 CYS LYS SER TYR ASP GLN TRP ILE THR ARG LYS LYS LYS SEQRES 20 A 338 GLN TRP ASP VAL LEU SER THR LYS PHE SER SER VAL LYS SEQRES 21 A 338 LYS THR GLN LYS ILE GLY THR GLU ASN ILE ALA THR ALA SEQRES 22 A 338 TYR ASP ILE LEU LYS GLN GLU LEU ASN GLY PHE LYS GLU SEQRES 23 A 338 ALA THR PHE GLU ASN GLU ILE ASN LYS ARG ASP ASN LEU SEQRES 24 A 338 TYR ASN HIS LEU CYS PRO CYS VAL VAL GLU GLU ALA ARG SEQRES 25 A 338 LYS ASN THR GLN GLU ASN VAL LYS ASN VAL GLY SER GLY SEQRES 26 A 338 VAL GLU SER LYS ALA ALA SER SER ASN PRO ILE THR GLU FORMUL 2 HOH *42(H2 O) HELIX 1 1 ILE A 64 ASN A 90 1 27 HELIX 2 2 ASN A 95 MET A 114 1 20 HELIX 3 3 GLU A 128 ILE A 134 1 7 HELIX 4 4 ASP A 144 SER A 152 1 9 HELIX 5 5 SER A 152 MET A 161 1 10 HELIX 6 6 MET A 161 LYS A 169 1 9 HELIX 7 7 TYR A 189 ALA A 215 1 27 HELIX 8 8 ASN A 221 LEU A 228 1 8 HELIX 9 9 LEU A 228 LYS A 260 1 33 HELIX 10 10 THR A 272 GLU A 280 5 9 HELIX 11 11 LYS A 285 ASN A 294 1 10 HELIX 12 12 ASP A 297 CYS A 304 1 8 SSBOND 1 CYS A 16 CYS A 45 1555 1555 2.03 SSBOND 2 CYS A 29 CYS A 36 1555 1555 2.04 SSBOND 3 CYS A 99 CYS A 176 1555 1555 2.03 SSBOND 4 CYS A 214 CYS A 231 1555 1555 2.03 SSBOND 5 CYS A 226 CYS A 306 1555 1555 2.03 SSBOND 6 CYS A 235 CYS A 304 1555 1555 2.01 CRYST1 60.572 60.572 241.049 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016509 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016509 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004149 0.00000