HEADER RECEPTOR/DNA 19-NOV-05 2C7A TITLE STRUCTURE OF THE PROGESTERONE RECEPTOR-DNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROGESTERONE RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: DNA BINDING DOMAIN, RESIDUES 399-476; COMPND 5 SYNONYM: PR; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*GP*TP COMPND 9 *TP*TP*GP*TP*TP*CP*TP*G)-3'; COMPND 10 CHAIN: C; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: 5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*AP*AP COMPND 13 *CP*TP*GP*TP*TP*CP*TP*G)-3'; COMPND 14 CHAIN: D SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_COMMON: HUMAN; SOURCE 16 ORGANISM_TAXID: 9606 KEYWDS RECEPTOR/DNA, PROGESTERONE RECEPTOR, DNA-BINDING, COMPLEX, KEYWDS 2 METAL-BINDING, NUCLEAR PROTEIN, PHOSPHORYLATION, KEYWDS 3 STEROID-BINDING, TRANSCRIPTION REGULATION, ZINC-FINGER, KEYWDS 4 ZINC, RECEPTOR/DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.C.ROEMER,D.C.DONHAM,L.SHERMAN,V.H.PON,D.P.EDWARDS, AUTHOR 2 M.E.A.CHURCHILL REVDAT 5 24-FEB-09 2C7A 1 VERSN REVDAT 4 12-JUN-07 2C7A 1 REMARK REVDAT 3 29-NOV-06 2C7A 1 JRNL REVDAT 2 19-SEP-06 2C7A 1 ATOM REVDAT 1 30-AUG-06 2C7A 0 JRNL AUTH S.C.ROEMER,D.C.DONHAM,L.SHERMAN,V.H.PON, JRNL AUTH 2 D.P.EDWARDS,M.E.A.CHURCHILL JRNL TITL STRUCTURE OF THE PROGESTERONE RECEPTOR- JRNL TITL 2 DEOXYRIBONUCLEIC ACID COMPLEX: NOVEL INTERACTIONS JRNL TITL 3 REQUIRED FOR BINDING TO HALF-SITE RESPONSE JRNL TITL 4 ELEMENTS. JRNL REF MOL.ENDOCRINOL. V. 20 3042 2006 JRNL REFN ISSN 0888-8809 JRNL PMID 16931575 JRNL DOI 10.1210/ME.2005-0511 REMARK 2 REMARK 2 RESOLUTION. 2.5 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 14739 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1641 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 970 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2720 REMARK 3 BIN FREE R VALUE SET COUNT : 114 REMARK 3 BIN FREE R VALUE : 0.3490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1164 REMARK 3 NUCLEIC ACID ATOMS : 729 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 148 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.85000 REMARK 3 B22 (A**2) : -0.31000 REMARK 3 B33 (A**2) : -2.53000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.291 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.242 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.153 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.869 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.898 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2011 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2836 ; 1.706 ; 2.427 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 152 ; 6.026 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 272 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1248 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 809 ; 0.209 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 162 ; 0.152 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 23 ; 0.188 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.192 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 756 ; 1.218 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1190 ; 2.219 ; 2.500 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1255 ; 1.657 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1646 ; 2.488 ; 3.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 2C7A COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-NOV-05. REMARK 100 THE PDBE ID CODE IS EBI-26469. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 77.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16986 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA):NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.76500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.98000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.92500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.98000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.76500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.92500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS B 640 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 640 CG CD CE NZ REMARK 470 LYS B 638 CG CD CE NZ REMARK 470 PHE B 639 CA C O CB CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 612 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 DA C 3 O4' - C1' - N9 ANGL. DEV. = -5.9 DEGREES REMARK 500 DA C 6 O4' - C1' - N9 ANGL. DEV. = -2.2 DEGREES REMARK 500 DC C 7 O4' - C1' - C2' ANGL. DEV. = -3.8 DEGREES REMARK 500 DT C 11 O4' - C1' - N1 ANGL. DEV. = -5.4 DEGREES REMARK 500 DT C 12 C5 - C4 - O4 ANGL. DEV. = -4.4 DEGREES REMARK 500 DT C 12 N3 - C4 - O4 ANGL. DEV. = 4.4 DEGREES REMARK 500 DT C 12 O4' - C1' - N1 ANGL. DEV. = -4.3 DEGREES REMARK 500 DG C 13 O4' - C1' - N9 ANGL. DEV. = -2.5 DEGREES REMARK 500 DT C 14 O4' - C1' - N1 ANGL. DEV. = -3.7 DEGREES REMARK 500 DT C 15 O4' - C1' - N1 ANGL. DEV. = -3.1 DEGREES REMARK 500 DT C 17 O4' - C1' - N1 ANGL. DEV. = -6.3 DEGREES REMARK 500 DC D 1 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DC D 2 O4' - C1' - C2' ANGL. DEV. = -3.6 DEGREES REMARK 500 DA D 3 O4' - C1' - N9 ANGL. DEV. = -3.1 DEGREES REMARK 500 DG D 4 O4' - C1' - C2' ANGL. DEV. = -3.2 DEGREES REMARK 500 DA D 6 O4' - C1' - N9 ANGL. DEV. = -2.2 DEGREES REMARK 500 DA D 10 N9 - C1' - C2' ANGL. DEV. = 8.7 DEGREES REMARK 500 DA D 10 O4' - C1' - C2' ANGL. DEV. = -3.2 DEGREES REMARK 500 DA D 10 O4' - C1' - N9 ANGL. DEV. = -2.1 DEGREES REMARK 500 DC D 11 O4' - C1' - N1 ANGL. DEV. = -4.1 DEGREES REMARK 500 DT D 12 O3' - P - OP1 ANGL. DEV. = -6.7 DEGREES REMARK 500 DT D 12 O3' - P - OP2 ANGL. DEV. = -6.7 DEGREES REMARK 500 DG D 13 O4' - C1' - C2' ANGL. DEV. = -3.0 DEGREES REMARK 500 DT D 14 O4' - C1' - N1 ANGL. DEV. = -6.5 DEGREES REMARK 500 DT D 15 O3' - P - OP1 ANGL. DEV. = -6.8 DEGREES REMARK 500 DT D 15 O3' - P - OP2 ANGL. DEV. = -6.8 DEGREES REMARK 500 DC D 16 C3' - O3' - P ANGL. DEV. = 8.7 DEGREES REMARK 500 DT D 17 O4' - C1' - N1 ANGL. DEV. = -5.1 DEGREES REMARK 500 DG D 18 O4' - C1' - N9 ANGL. DEV. = -2.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN B 564 122.48 157.31 REMARK 500 ARG B 637 78.47 68.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1641 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 587 SG REMARK 620 2 CYS A 567 SG 112.5 REMARK 620 3 CYS A 570 SG 110.6 104.6 REMARK 620 4 CYS A 584 SG 98.3 117.3 113.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1642 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 603 SG REMARK 620 2 CYS A 609 SG 106.7 REMARK 620 3 CYS A 622 SG 110.6 105.2 REMARK 620 4 CYS A 619 SG 112.6 111.7 109.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1639 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 567 SG REMARK 620 2 CYS B 570 SG 108.3 REMARK 620 3 CYS B 584 SG 113.9 106.8 REMARK 620 4 CYS B 587 SG 111.0 114.5 102.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1640 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 603 SG REMARK 620 2 CYS B 609 SG 110.4 REMARK 620 3 CYS B 622 SG 110.1 104.3 REMARK 620 4 CYS B 619 SG 109.2 113.0 109.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1641 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1642 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B1639 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B1640 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1A28 RELATED DB: PDB REMARK 900 HORMONE-BOUND HUMAN PROGESTERONE RECEPTOR REMARK 900 LIGAND-BINDING DOMAIN REMARK 900 RELATED ID: 1E3K RELATED DB: PDB REMARK 900 HUMAN PROGESTERON RECEPTOR LIGAND BINDING REMARK 900 DOMAIN IN COMPLEX WITH THE LIGAND REMARK 900 METRIBOLONE (R1881) REMARK 900 RELATED ID: 1SQN RELATED DB: PDB REMARK 900 PROGESTERONE RECEPTOR LIGAND BINDING DOMAIN REMARK 900 WITH BOUND NORETHINDRONE REMARK 900 RELATED ID: 1SR7 RELATED DB: PDB REMARK 900 PROGESTERONE RECEPTOR HORMONE BINDING DOMAIN REMARK 900 WITH BOUNDMOMETASONE FUROATE REMARK 900 RELATED ID: 1ZUC RELATED DB: PDB REMARK 900 PROGESTERONE RECEPTOR LIGAND BINDING DOMAIN IN REMARK 900 COMPLEX WITH THE NONSTEROIDAL AGONIST REMARK 900 TANAPROGET DBREF 2C7A A 563 640 UNP P06401 PRGR_HUMAN 399 476 DBREF 2C7A B 563 640 UNP P06401 PRGR_HUMAN 399 476 DBREF 2C7A C 1 18 PDB 2C7A 2C7A 1 18 DBREF 2C7A D 1 18 PDB 2C7A 2C7A 1 18 SEQRES 1 C 18 DC DC DA DG DA DA DC DA DG DT DT DT DG SEQRES 2 C 18 DT DT DC DT DG SEQRES 1 D 18 DC DC DA DG DA DA DC DA DA DA DC DT DG SEQRES 2 D 18 DT DT DC DT DG SEQRES 1 A 78 PRO GLN LYS ILE CYS LEU ILE CYS GLY ASP GLU ALA SER SEQRES 2 A 78 GLY CYS HIS TYR GLY VAL LEU THR CYS GLY SER CYS LYS SEQRES 3 A 78 VAL PHE PHE LYS ARG ALA MET GLU GLY GLN HIS ASN TYR SEQRES 4 A 78 LEU CYS ALA GLY ARG ASN ASP CYS ILE VAL ASP LYS ILE SEQRES 5 A 78 ARG ARG LYS ASN CYS PRO ALA CYS ARG LEU ARG LYS CYS SEQRES 6 A 78 CYS GLN ALA GLY MET VAL LEU GLY GLY ARG LYS PHE LYS SEQRES 1 B 78 PRO GLN LYS ILE CYS LEU ILE CYS GLY ASP GLU ALA SER SEQRES 2 B 78 GLY CYS HIS TYR GLY VAL LEU THR CYS GLY SER CYS LYS SEQRES 3 B 78 VAL PHE PHE LYS ARG ALA MET GLU GLY GLN HIS ASN TYR SEQRES 4 B 78 LEU CYS ALA GLY ARG ASN ASP CYS ILE VAL ASP LYS ILE SEQRES 5 B 78 ARG ARG LYS ASN CYS PRO ALA CYS ARG LEU ARG LYS CYS SEQRES 6 B 78 CYS GLN ALA GLY MET VAL LEU GLY GLY ARG LYS PHE LYS HET ZN A1641 1 HET ZN A1642 1 HET ZN B1639 1 HET ZN B1640 1 HETNAM ZN ZINC ION FORMUL 5 ZN 4(ZN 2+) FORMUL 9 HOH *148(H2 O1) HELIX 1 1 CYS A 584 GLY A 597 1 14 HELIX 2 2 CYS A 619 GLY A 631 1 13 HELIX 3 3 CYS B 584 GLY B 597 1 14 HELIX 4 4 CYS B 619 GLY B 631 1 13 SHEET 1 AA 2 GLY A 576 HIS A 578 0 SHEET 2 AA 2 VAL A 581 THR A 583 -1 O VAL A 581 N HIS A 578 SHEET 1 BA 2 GLY B 576 HIS B 578 0 SHEET 2 BA 2 VAL B 581 THR B 583 -1 O VAL B 581 N HIS B 578 LINK ZN ZN A1641 SG CYS A 587 1555 1555 2.33 LINK ZN ZN A1641 SG CYS A 567 1555 1555 2.32 LINK ZN ZN A1641 SG CYS A 570 1555 1555 2.31 LINK ZN ZN A1641 SG CYS A 584 1555 1555 2.35 LINK ZN ZN A1642 SG CYS A 603 1555 1555 2.32 LINK ZN ZN A1642 SG CYS A 609 1555 1555 2.34 LINK ZN ZN A1642 SG CYS A 622 1555 1555 2.32 LINK ZN ZN A1642 SG CYS A 619 1555 1555 2.32 LINK ZN ZN B1639 SG CYS B 570 1555 1555 2.33 LINK ZN ZN B1639 SG CYS B 584 1555 1555 2.34 LINK ZN ZN B1639 SG CYS B 587 1555 1555 2.33 LINK ZN ZN B1639 SG CYS B 567 1555 1555 2.34 LINK ZN ZN B1640 SG CYS B 609 1555 1555 2.31 LINK ZN ZN B1640 SG CYS B 622 1555 1555 2.33 LINK ZN ZN B1640 SG CYS B 619 1555 1555 2.34 LINK ZN ZN B1640 SG CYS B 603 1555 1555 2.32 SITE 1 AC1 4 CYS A 567 CYS A 570 CYS A 584 CYS A 587 SITE 1 AC2 4 CYS A 603 CYS A 609 CYS A 619 CYS A 622 SITE 1 AC3 4 CYS B 567 CYS B 570 CYS B 584 CYS B 587 SITE 1 AC4 4 CYS B 603 CYS B 609 CYS B 619 CYS B 622 CRYST1 39.530 107.850 111.960 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025297 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009272 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008932 0.00000