HEADER UBIQUITIN-LIKE PROTEIN 24-NOV-05 2C7H TITLE SOLUTION NMR STRUCTURE OF THE DWNN DOMAIN FROM HUMAN RBBP6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETINOBLASTOMA-BINDING PROTEIN 6, ISOFORM 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DWNN, RESIDUES 1-81; COMPND 5 SYNONYM: RBBP6; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: N-TERMINAL 5 RESIDUES ARE ARTIFACTS OF THE COMPND 8 PGEX-6P-2 CLONING VECTOR SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: (DE3) PLYSS; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-2 KEYWDS RBBP6, P53-ASSOCIATED, MRNA PROCESSING, KEYWDS 2 SPLICING-ASSOCIATED, OESOPHAGEAL CANCER, UBIQUITIN-LIKE KEYWDS 3 PROTEIN EXPDTA SOLUTION NMR NUMMDL 25 AUTHOR D.J.R.PUGH,E.AB,A.FARO,P.T.LUTYA,E.HOFFMANN,D.J.G.REES REVDAT 2 24-FEB-09 2C7H 1 VERSN REVDAT 1 19-JAN-06 2C7H 0 JRNL AUTH D.J.R.PUGH,E.AB,A.FARO,P.T.LUTYA,E.HOFFMANN, JRNL AUTH 2 D.J.G.REES JRNL TITL DWNN, A NOVEL UBIQUITIN-LIKE DOMAIN, IMPLICATES JRNL TITL 2 RBBP6 IN MRNA PROCESSING AND UBIQUITIN-LIKE JRNL TITL 3 PATHWAYS JRNL REF BMC STRUCT.BIOL. V. 6 1 2006 JRNL REFN ISSN 1472-6807 JRNL PMID 16396680 JRNL DOI 10.1186/1472-6807-6-1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS, GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, REMARK 3 RICE,SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE FINAL SET OF NOE-BASED REMARK 3 RESTRAINTS, TOGETHER WITH DIHEDRAL RESTRAINTS FOR 90 RESIDUES, REMARK 3 WERE USED FOR REFINEMENT IN EXPLICIT SOLVENT USING CNS, REMARK 3 ACCORDING TO THE STANDARD RECOORD PROTOCOL. REMARK 4 REMARK 4 2C7H COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-NOV-05. REMARK 100 THE PDBE ID CODE IS EBI-26434. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.0 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 150MM REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 95% WATER/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : HNCO; CBCACONH; CBCANH; REMARK 210 HCCH-TOCSY; HCCH-COSY; HNH- REMARK 210 HSQC-TOCSY; HNH-HSQC-NOESY; REMARK 210 HCH-HSQC-NOESY; HH-NOESY; REMARK 210 HMQC-J; HN-EXCHANGE, HH- REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 REMARK 210 SPECTROMETER MODEL : UNITY INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, CANDID, CYANA, REMARK 210 CNS, RECOORD REMARK 210 METHOD USED : AUTOMATED NOE ASSIGNMENT REMARK 210 USING CANDID REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 18 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE REMARK 210 NMR SPECTROSCOPY ON A 15N,13C-LABELLED SAMPLE. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 27 -41.08 -152.58 REMARK 500 1 LYS A 43 72.30 77.75 REMARK 500 2 PRO A 2 -157.01 -93.95 REMARK 500 3 LEU A 27 -41.32 -148.50 REMARK 500 5 MET A 6 -170.87 64.25 REMARK 500 5 LEU A 17 -52.78 74.04 REMARK 500 5 LYS A 43 70.93 60.75 REMARK 500 7 SER A 5 80.45 57.47 REMARK 500 7 LEU A 17 -51.78 73.65 REMARK 500 7 LYS A 43 70.14 80.40 REMARK 500 8 MET A 6 98.67 55.94 REMARK 500 8 LYS A 16 -39.23 -177.81 REMARK 500 8 LEU A 17 -52.53 76.71 REMARK 500 8 LYS A 43 45.02 71.75 REMARK 500 10 PRO A 2 41.86 -82.57 REMARK 500 10 LEU A 27 -45.75 -140.90 REMARK 500 10 ASP A 48 -40.84 -130.23 REMARK 500 11 LEU A 27 -42.45 -145.02 REMARK 500 11 ASP A 48 -47.20 -133.36 REMARK 500 12 PRO A 2 47.84 -76.54 REMARK 500 12 SER A 5 -62.03 -165.87 REMARK 500 12 ASP A 48 -45.19 -130.57 REMARK 500 13 LYS A 43 65.63 75.37 REMARK 500 14 MET A 6 -164.13 60.20 REMARK 500 15 MET A 6 173.73 63.96 REMARK 500 16 SER A 5 24.03 -149.62 REMARK 500 16 MET A 6 113.13 58.85 REMARK 500 16 LYS A 43 66.96 66.93 REMARK 500 16 THR A 63 -36.80 74.41 REMARK 500 17 LYS A 43 68.50 66.22 REMARK 500 19 LYS A 43 62.29 71.71 REMARK 500 20 LEU A 27 -45.23 -131.48 REMARK 500 20 LYS A 43 68.23 67.35 REMARK 500 21 PRO A 2 -70.76 -67.53 REMARK 500 21 SER A 5 35.47 -144.83 REMARK 500 21 LYS A 43 65.92 71.21 REMARK 500 22 LEU A 27 -41.11 -149.14 REMARK 500 24 SER A 5 85.31 62.53 REMARK 500 24 LEU A 17 -47.31 71.89 REMARK 500 24 LYS A 43 67.06 76.66 REMARK 500 25 LYS A 43 66.13 61.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 4 ARG A 79 0.09 SIDE CHAIN REMARK 500 14 ARG A 41 0.08 SIDE CHAIN REMARK 500 20 ARG A 41 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 12 LYS A 43 25.0 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL DBREF 2C7H A 1 5 PDB 2C7H 2C7H 1 5 DBREF 2C7H A 6 86 UNP Q8N0V2 Q8N0V2_HUMAN 1 81 SEQRES 1 A 86 GLY PRO LEU GLY SER MET SER CYS VAL HIS TYR LYS PHE SEQRES 2 A 86 SER SER LYS LEU ASN TYR ASP THR VAL THR PHE ASP GLY SEQRES 3 A 86 LEU HIS ILE SER LEU CYS ASP LEU LYS LYS GLN ILE MET SEQRES 4 A 86 GLY ARG GLU LYS LEU LYS ALA ALA ASP CYS ASP LEU GLN SEQRES 5 A 86 ILE THR ASN ALA GLN THR LYS GLU GLU TYR THR ASP ASP SEQRES 6 A 86 ASN ALA LEU ILE PRO LYS ASN SER SER VAL ILE VAL ARG SEQRES 7 A 86 ARG ILE PRO ILE GLY GLY VAL LYS HELIX 1 1 LEU A 31 LYS A 43 1 13 SHEET 1 AA 5 TYR A 19 PHE A 24 0 SHEET 2 AA 5 SER A 7 PHE A 13 -1 O SER A 7 N PHE A 24 SHEET 3 AA 5 VAL A 75 PRO A 81 1 O VAL A 75 N LYS A 12 SHEET 4 AA 5 CYS A 49 ASN A 55 -1 O ASP A 50 N ILE A 80 SHEET 5 AA 5 GLU A 61 TYR A 62 -1 O TYR A 62 N ILE A 53 SHEET 1 AB 2 HIS A 28 SER A 30 0 SHEET 2 AB 2 LEU A 68 PRO A 70 -1 O ILE A 69 N ILE A 29 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1