HEADER TRANSFERASE 30-NOV-05 2C7Z TITLE PLANT ENZYME CRYSTAL FORM II COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-KETOACYL-COA THIOLASE 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 38-441; COMPND 5 SYNONYM: BETA-KETOTHIOLASE 2, ACETYL-COA ACYLTRANSFERASE 2, COMPND 6 PEROXISOMAL 3-OXOACYL-COA THIOLASE 2, PEROXISOME DEFECTIVE PROTEIN 1; COMPND 7 EC: 2.3.1.16; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS FATTY ACID METABOLISM, TRANSFERASE, OXYLIPIN SYNTHESIS, LIPID KEYWDS 2 SYNTHESIS, ACYLTRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.SUNDARAMOORTHY,E.MICOSSI,M.S.ALPHEY,G.A.LEONARD,W.N.HUNTER REVDAT 4 13-DEC-23 2C7Z 1 REMARK REVDAT 3 13-JUL-11 2C7Z 1 VERSN REVDAT 2 24-FEB-09 2C7Z 1 VERSN REVDAT 1 17-MAY-06 2C7Z 0 JRNL AUTH R.SUNDARAMOORTHY,E.MICOSSI,M.S.ALPHEY,V.GERMAIN,J.H.BRYCE, JRNL AUTH 2 S.M.SMITH,G.A.LEONARD,W.N.HUNTER JRNL TITL THE CRYSTAL STRUCTURE OF A PLANT 3-KETOACYL-COA THIOLASE JRNL TITL 2 REVEALS THE POTENTIAL FOR REDOX CONTROL OF PEROXISOMAL FATTY JRNL TITL 3 ACID BETA-OXIDATION. JRNL REF J.MOL.BIOL. V. 359 347 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16630629 JRNL DOI 10.1016/J.JMB.2006.03.032 REMARK 2 REMARK 2 RESOLUTION. 2.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 87.4 REMARK 3 NUMBER OF REFLECTIONS : 13748 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 725 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.37 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.43 REMARK 3 REFLECTION IN BIN (WORKING SET) : 752 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 35 REMARK 3 BIN FREE R VALUE : 0.3990 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2900 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 102 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 53.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.52000 REMARK 3 B22 (A**2) : -0.12000 REMARK 3 B33 (A**2) : 0.64000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.632 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.324 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.276 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 26.770 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.896 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2910 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3946 ; 1.269 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 394 ; 5.644 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 108 ;34.582 ;24.167 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 466 ;16.722 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;18.396 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 463 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2183 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1407 ; 0.196 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2000 ; 0.295 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 146 ; 0.180 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 50 ; 0.217 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.102 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2001 ; 0.460 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3116 ; 0.806 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 996 ; 1.145 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 830 ; 1.883 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 38 A 259 REMARK 3 ORIGIN FOR THE GROUP (A): 29.2740 14.6320 5.4600 REMARK 3 T TENSOR REMARK 3 T11: -0.0338 T22: -0.2261 REMARK 3 T33: -0.4115 T12: -0.0349 REMARK 3 T13: -0.0113 T23: 0.0098 REMARK 3 L TENSOR REMARK 3 L11: 4.3963 L22: 5.7636 REMARK 3 L33: 2.1186 L12: -3.5734 REMARK 3 L13: 1.3057 L23: -1.3712 REMARK 3 S TENSOR REMARK 3 S11: 0.2854 S12: 0.1565 S13: -0.3244 REMARK 3 S21: -0.8783 S22: 0.0396 S23: 0.1466 REMARK 3 S31: 0.1268 S32: 0.0110 S33: -0.3250 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 260 A 292 REMARK 3 ORIGIN FOR THE GROUP (A): 8.4760 5.1600 0.3380 REMARK 3 T TENSOR REMARK 3 T11: 0.5985 T22: -0.0790 REMARK 3 T33: 1.3035 T12: -0.0775 REMARK 3 T13: -0.8726 T23: 0.0890 REMARK 3 L TENSOR REMARK 3 L11: 6.6359 L22: 7.4566 REMARK 3 L33: 2.3981 L12: -3.7480 REMARK 3 L13: -3.1705 L23: 0.3004 REMARK 3 S TENSOR REMARK 3 S11: 0.1832 S12: 0.7340 S13: -2.7816 REMARK 3 S21: -2.0018 S22: 0.2449 S23: 3.3416 REMARK 3 S31: 0.6956 S32: -0.1316 S33: -0.4281 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 293 A 441 REMARK 3 ORIGIN FOR THE GROUP (A): 22.7350 12.0340 18.8310 REMARK 3 T TENSOR REMARK 3 T11: -0.2162 T22: -0.0203 REMARK 3 T33: -0.3244 T12: 0.1107 REMARK 3 T13: 0.0397 T23: 0.2432 REMARK 3 L TENSOR REMARK 3 L11: 4.2873 L22: 7.1889 REMARK 3 L33: 2.6316 L12: -2.9831 REMARK 3 L13: 0.5507 L23: -0.9665 REMARK 3 S TENSOR REMARK 3 S11: -0.4369 S12: -0.7866 S13: -0.8011 REMARK 3 S21: 0.3259 S22: 0.9049 S23: 1.0339 REMARK 3 S31: -0.0001 S32: -0.3575 S33: -0.4680 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2001 A 2102 REMARK 3 ORIGIN FOR THE GROUP (A): 25.4030 14.3650 12.7310 REMARK 3 T TENSOR REMARK 3 T11: 0.0179 T22: -0.0562 REMARK 3 T33: -0.3259 T12: 0.0683 REMARK 3 T13: -0.0295 T23: 0.0595 REMARK 3 L TENSOR REMARK 3 L11: 1.3316 L22: 1.3636 REMARK 3 L33: 1.1192 L12: -1.0134 REMARK 3 L13: 0.2674 L23: 0.3719 REMARK 3 S TENSOR REMARK 3 S11: -0.1320 S12: -0.1438 S13: -0.1519 REMARK 3 S21: -0.0751 S22: 0.2549 S23: 0.1174 REMARK 3 S31: -0.0710 S32: -0.1008 S33: -0.1229 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REGIONS WITH NO DIFFERENCE DENSITY HAVE BEEN LEFT REMARK 3 OUT. NON DEFINED SIDE CHAINS ARE MODELLED WITH ZERO OCCUPANCY REMARK 4 REMARK 4 2C7Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-NOV-05. REMARK 100 THE DEPOSITION ID IS D_1290025856. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.70 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16453 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.3 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.30000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1AFW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% POLYETHYLENE GLYCOL 4000, 0.1M REMARK 280 TRIS-HCL PH 8.5, 300MM MGCL2, PH 7.70 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 36.69750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.91050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.69750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.91050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 73.39500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 38 REMARK 465 GLY A 177 REMARK 465 SER A 178 REMARK 465 VAL A 179 REMARK 465 ASN A 180 REMARK 465 PRO A 181 REMARK 465 ALA A 182 REMARK 465 VAL A 183 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 184 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 205 CD OE1 NE2 REMARK 480 ARG A 206 CG CD NE CZ NH1 NH2 REMARK 480 LYS A 249 CG CD CE NZ REMARK 480 LYS A 254 CG CD CE NZ REMARK 480 LYS A 275 CG CD CE NZ REMARK 480 LYS A 277 CG CD CE NZ REMARK 480 PHE A 280 CG CD1 CD2 CE1 CE2 CZ REMARK 480 LYS A 282 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE A 207 O HOH A 2042 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN A 205 CG GLN A 205 CD -0.212 REMARK 500 ARG A 206 CB ARG A 206 CG -0.355 REMARK 500 LYS A 254 CB LYS A 254 CG -0.582 REMARK 500 LYS A 275 CB LYS A 275 CG 0.250 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 254 CA - CB - CG ANGL. DEV. = 29.2 DEGREES REMARK 500 LYS A 254 CB - CG - CD ANGL. DEV. = 26.5 DEGREES REMARK 500 LYS A 282 CB - CG - CD ANGL. DEV. = 21.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 67 -0.92 66.99 REMARK 500 ASP A 99 137.45 -174.81 REMARK 500 THR A 243 -151.84 -127.54 REMARK 500 PHE A 280 -82.41 -108.85 REMARK 500 ASP A 283 35.76 -97.16 REMARK 500 GLU A 362 47.45 -108.09 REMARK 500 PRO A 394 37.82 -86.68 REMARK 500 LEU A 395 -106.90 31.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2C7Y RELATED DB: PDB REMARK 900 PLANT ENZYME DBREF 2C7Z A 38 441 UNP Q9S7M3 THIK2_ARATH 38 441 SEQRES 1 A 404 ASP SER ALA ALA TYR GLN ARG THR SER LEU TYR GLY ASP SEQRES 2 A 404 ASP VAL VAL ILE VAL ALA ALA HIS ARG THR PRO LEU CYS SEQRES 3 A 404 LYS SER LYS ARG GLY ASN PHE LYS ASP THR TYR PRO ASP SEQRES 4 A 404 ASP LEU LEU ALA PRO VAL LEU ARG ALA LEU ILE GLU LYS SEQRES 5 A 404 THR ASN LEU ASN PRO SER GLU VAL GLY ASP ILE VAL VAL SEQRES 6 A 404 GLY THR VAL LEU ALA PRO GLY SER GLN ARG ALA SER GLU SEQRES 7 A 404 CYS ARG MET ALA ALA PHE TYR ALA GLY PHE PRO GLU THR SEQRES 8 A 404 VAL ALA VAL ARG THR VAL ASN ARG GLN CYS SER SER GLY SEQRES 9 A 404 LEU GLN ALA VAL ALA ASP VAL ALA ALA ALA ILE LYS ALA SEQRES 10 A 404 GLY PHE TYR ASP ILE GLY ILE GLY ALA GLY LEU GLU SER SEQRES 11 A 404 MET THR THR ASN PRO MET ALA TRP GLU GLY SER VAL ASN SEQRES 12 A 404 PRO ALA VAL LYS LYS PHE ALA GLN ALA GLN ASN CYS LEU SEQRES 13 A 404 LEU PRO MET GLY VAL THR SER GLU ASN VAL ALA GLN ARG SEQRES 14 A 404 PHE GLY VAL SER ARG GLN GLU GLN ASP GLN ALA ALA VAL SEQRES 15 A 404 ASP SER HIS ARG LYS ALA ALA ALA ALA THR ALA ALA GLY SEQRES 16 A 404 LYS PHE LYS ASP GLU ILE ILE PRO VAL LYS THR LYS LEU SEQRES 17 A 404 VAL ASP PRO LYS THR GLY ASP GLU LYS PRO ILE THR VAL SEQRES 18 A 404 SER VAL ASP ASP GLY ILE ARG PRO THR THR THR LEU ALA SEQRES 19 A 404 SER LEU GLY LYS LEU LYS PRO VAL PHE LYS LYS ASP GLY SEQRES 20 A 404 THR THR THR ALA GLY ASN SER SER GLN VAL SER ASP GLY SEQRES 21 A 404 ALA GLY ALA VAL LEU LEU MET LYS ARG SER VAL ALA MET SEQRES 22 A 404 GLN LYS GLY LEU PRO VAL LEU GLY VAL PHE ARG THR PHE SEQRES 23 A 404 ALA ALA VAL GLY VAL ASP PRO ALA ILE MET GLY ILE GLY SEQRES 24 A 404 PRO ALA VAL ALA ILE PRO ALA ALA VAL LYS ALA ALA GLY SEQRES 25 A 404 LEU GLU LEU ASP ASP ILE ASP LEU PHE GLU ILE ASN GLU SEQRES 26 A 404 ALA PHE ALA SER GLN PHE VAL TYR CYS ARG ASN LYS LEU SEQRES 27 A 404 GLY LEU ASP PRO GLU LYS ILE ASN VAL ASN GLY GLY ALA SEQRES 28 A 404 MET ALA ILE GLY HIS PRO LEU GLY ALA THR GLY ALA ARG SEQRES 29 A 404 CYS VAL ALA THR LEU LEU HIS GLU MET LYS ARG ARG GLY SEQRES 30 A 404 LYS ASP CYS ARG PHE GLY VAL VAL SER MET CYS ILE GLY SEQRES 31 A 404 THR GLY MET GLY ALA ALA ALA VAL PHE GLU ARG GLY ASP SEQRES 32 A 404 GLY FORMUL 2 HOH *102(H2 O) HELIX 1 1 PRO A 75 ASN A 91 1 17 HELIX 2 2 ASN A 93 VAL A 97 5 5 HELIX 3 3 SER A 110 ALA A 123 1 14 HELIX 4 4 GLY A 141 ALA A 154 1 14 HELIX 5 5 LYS A 184 GLY A 208 1 25 HELIX 6 6 SER A 210 GLY A 232 1 23 HELIX 7 7 THR A 269 GLY A 274 1 6 HELIX 8 8 ARG A 306 LYS A 312 1 7 HELIX 9 9 ILE A 335 ALA A 348 1 14 HELIX 10 10 GLU A 351 ILE A 355 5 5 HELIX 11 11 PHE A 364 LEU A 375 1 12 HELIX 12 12 ASP A 378 LYS A 381 5 4 HELIX 13 13 GLY A 387 GLY A 392 1 6 HELIX 14 14 PRO A 394 GLY A 396 5 3 HELIX 15 15 ALA A 397 GLY A 414 1 18 SHEET 1 AA 4 TYR A 42 LEU A 47 0 SHEET 2 AA 4 GLY A 318 GLY A 327 -1 O PHE A 323 N SER A 46 SHEET 3 AA 4 VAL A 52 ARG A 59 -1 O VAL A 52 N PHE A 320 SHEET 4 AA 4 SER A 295 LYS A 305 -1 O ALA A 300 N HIS A 58 SHEET 1 AB 5 TYR A 42 LEU A 47 0 SHEET 2 AB 5 GLY A 318 GLY A 327 -1 O PHE A 323 N SER A 46 SHEET 3 AB 5 MET A 430 ARG A 438 -1 O GLY A 431 N VAL A 326 SHEET 4 AB 5 PHE A 419 CYS A 425 -1 O GLY A 420 N PHE A 436 SHEET 5 AB 5 LEU A 357 ILE A 360 1 O LEU A 357 N VAL A 421 SHEET 1 AC 2 VAL A 241 VAL A 246 0 SHEET 2 AC 2 GLU A 253 VAL A 258 -1 O LYS A 254 N LEU A 245 SSBOND 1 CYS A 138 CYS A 192 1555 1555 2.04 CRYST1 73.395 95.821 56.125 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013625 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010436 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017817 0.00000