HEADER OXIDOREDUCTASE 30-NOV-05 2C82 TITLE X-RAY STRUCTURE OF 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE, TITLE 2 DXR, RV2870C, FROM MYCOBACTERIUM TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DXP REDUCTOISOMERASE, 1-DEOXYXYLULOSE-5-PHOSPHATE COMPND 5 REDUCTOISOMERASE, 2-C-METHYL-D-ERYTHRITOL 4-PHOSPHATE SYNTHASE; COMPND 6 EC: 1.1.1.267; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET101D-TOPO KEYWDS 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE, RV2870C, DOXP/MEP KEYWDS 2 PATHWAY, OXIDOREDUCTASE, ISOPRENE BIOSYNTHESIS, METAL-BINDING, NADP EXPDTA X-RAY DIFFRACTION AUTHOR L.M.HENRIKSSON,C.BJORKELID,S.L.MOWBRAY,T.UNGE REVDAT 4 13-DEC-23 2C82 1 REMARK REVDAT 3 08-MAY-19 2C82 1 REMARK REVDAT 2 24-FEB-09 2C82 1 VERSN REVDAT 1 28-JUN-06 2C82 0 JRNL AUTH L.M.HENRIKSSON,C.BJORKELID,S.L.MOWBRAY,T.UNGE JRNL TITL THE 1.9 A RESOLUTION STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS JRNL TITL 2 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE, A POTENTIAL JRNL TITL 3 DRUG TARGET. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 62 807 2006 JRNL REFN ISSN 0907-4449 JRNL PMID 16790937 JRNL DOI 10.1107/S0907444906019196 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 56321 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2962 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4151 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 198 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5562 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 334 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.93000 REMARK 3 B22 (A**2) : 0.93000 REMARK 3 B33 (A**2) : -1.87000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.177 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.155 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.118 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.946 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5678 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7758 ; 1.148 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 756 ; 4.949 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 230 ;35.689 ;23.652 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 840 ;12.982 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 44 ;19.420 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 912 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4342 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2625 ; 0.196 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3941 ; 0.296 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 348 ; 0.132 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 41 ; 0.201 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.132 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3845 ; 0.794 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5994 ; 1.300 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2040 ; 1.838 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1764 ; 3.004 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 11 A 389 1 REMARK 3 1 B 11 B 389 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 2781 ; .01 ; .05 REMARK 3 TIGHT THERMAL 1 A (A**2): 2781 ; .06 ; .50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2C82 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-NOV-05. REMARK 100 THE DEPOSITION ID IS D_1290026502. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : 110.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.072 REMARK 200 MONOCHROMATOR : SILICON (111) CHANNEL-CUT REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56321 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.39000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1Q0Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE SITTING DROPS CONTAINED 1 ML REMARK 280 PROTEIN, 5.35 MG/ML, WITH A FINAL CONCENTRATION OF 0.64 MM OF REMARK 280 FOSMIDOMYCIN, DISSOLVED IN 10 MM TRIS PH 8.0, AND 1 ML REMARK 280 CRYSTALLIZATION BUFFER (40% ETHYLENE GLYCOL, 2 MM MGSO4, 20 MM REMARK 280 DTT, 0.2 MM EDTA, AND 100 MM ACETATE PH 5.0). THE RESERVOIR REMARK 280 SOLUTION CONSISTED OF A MIXTURE BETWEEN THE CRYSTALLIZATION REMARK 280 BUFFER, AND THE BUFFER USED IN THE FINAL STEPS OF THE PROTEIN REMARK 280 PURIFICATION (75 MM NACL, 10 MM TRIS-HCL PH 7.5, 20% ETHYLENE REMARK 280 GLYCOL, 1 MM MGSO4, 10 MM DTT, 0.1 MM EDTA, AND 50 MM ACETATE PH REMARK 280 5.0). BEFORE THE CRYSTALS WERE FLASH-COOLED IN LIQUID NITROGEN REMARK 280 THEY WERE TRANSFERRED TO A DROP WITH THE RESERVOIR SOLUTION REMARK 280 COMPLEMENTED WITH AN ADDITIONAL 10% ETHYLENE GLYCOL, AND 1 MM REMARK 280 FOSMIDOMYCIN., VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 119.49850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 59.74925 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 179.24775 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASN A 3 REMARK 465 SER A 4 REMARK 465 THR A 5 REMARK 465 ASP A 6 REMARK 465 GLY A 7 REMARK 465 ARG A 8 REMARK 465 ALA A 9 REMARK 465 ASP A 10 REMARK 465 ALA A 390 REMARK 465 SER A 391 REMARK 465 VAL A 392 REMARK 465 ALA A 393 REMARK 465 ILE A 394 REMARK 465 ALA A 395 REMARK 465 SER A 396 REMARK 465 THR A 397 REMARK 465 ALA A 398 REMARK 465 LYS A 399 REMARK 465 PRO A 400 REMARK 465 GLY A 401 REMARK 465 ALA A 402 REMARK 465 ALA A 403 REMARK 465 GLY A 404 REMARK 465 ARG A 405 REMARK 465 HIS A 406 REMARK 465 ALA A 407 REMARK 465 SER A 408 REMARK 465 THR A 409 REMARK 465 LEU A 410 REMARK 465 GLU A 411 REMARK 465 ARG A 412 REMARK 465 SER A 413 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ASN B 3 REMARK 465 SER B 4 REMARK 465 THR B 5 REMARK 465 ASP B 6 REMARK 465 GLY B 7 REMARK 465 ARG B 8 REMARK 465 ALA B 9 REMARK 465 ASP B 10 REMARK 465 ALA B 390 REMARK 465 SER B 391 REMARK 465 VAL B 392 REMARK 465 ALA B 393 REMARK 465 ILE B 394 REMARK 465 ALA B 395 REMARK 465 SER B 396 REMARK 465 THR B 397 REMARK 465 ALA B 398 REMARK 465 LYS B 399 REMARK 465 PRO B 400 REMARK 465 GLY B 401 REMARK 465 ALA B 402 REMARK 465 ALA B 403 REMARK 465 GLY B 404 REMARK 465 ARG B 405 REMARK 465 HIS B 406 REMARK 465 ALA B 407 REMARK 465 SER B 408 REMARK 465 THR B 409 REMARK 465 LEU B 410 REMARK 465 GLU B 411 REMARK 465 ARG B 412 REMARK 465 SER B 413 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 85 -74.59 -42.89 REMARK 500 ASP A 86 45.52 -105.05 REMARK 500 ALA A 199 -92.25 -85.02 REMARK 500 SER A 249 169.27 171.46 REMARK 500 ASP A 266 111.27 -168.08 REMARK 500 SER B 85 -74.77 -42.53 REMARK 500 ASP B 86 45.79 -105.16 REMARK 500 ALA B 199 -92.04 -85.25 REMARK 500 SER B 249 167.54 168.69 REMARK 500 ASP B 266 111.23 -168.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1390 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1390 DBREF 2C82 A 1 413 UNP P64012 DXR_MYCTU 1 413 DBREF 2C82 B 1 413 UNP P64012 DXR_MYCTU 1 413 SEQRES 1 A 413 MET THR ASN SER THR ASP GLY ARG ALA ASP GLY ARG LEU SEQRES 2 A 413 ARG VAL VAL VAL LEU GLY SER THR GLY SER ILE GLY THR SEQRES 3 A 413 GLN ALA LEU GLN VAL ILE ALA ASP ASN PRO ASP ARG PHE SEQRES 4 A 413 GLU VAL VAL GLY LEU ALA ALA GLY GLY ALA HIS LEU ASP SEQRES 5 A 413 THR LEU LEU ARG GLN ARG ALA GLN THR GLY VAL THR ASN SEQRES 6 A 413 ILE ALA VAL ALA ASP GLU HIS ALA ALA GLN ARG VAL GLY SEQRES 7 A 413 ASP ILE PRO TYR HIS GLY SER ASP ALA ALA THR ARG LEU SEQRES 8 A 413 VAL GLU GLN THR GLU ALA ASP VAL VAL LEU ASN ALA LEU SEQRES 9 A 413 VAL GLY ALA LEU GLY LEU ARG PRO THR LEU ALA ALA LEU SEQRES 10 A 413 LYS THR GLY ALA ARG LEU ALA LEU ALA ASN LYS GLU SER SEQRES 11 A 413 LEU VAL ALA GLY GLY SER LEU VAL LEU ARG ALA ALA ARG SEQRES 12 A 413 PRO GLY GLN ILE VAL PRO VAL ASP SER GLU HIS SER ALA SEQRES 13 A 413 LEU ALA GLN CYS LEU ARG GLY GLY THR PRO ASP GLU VAL SEQRES 14 A 413 ALA LYS LEU VAL LEU THR ALA SER GLY GLY PRO PHE ARG SEQRES 15 A 413 GLY TRP SER ALA ALA ASP LEU GLU HIS VAL THR PRO GLU SEQRES 16 A 413 GLN ALA GLY ALA HIS PRO THR TRP SER MET GLY PRO MET SEQRES 17 A 413 ASN THR LEU ASN SER ALA SER LEU VAL ASN LYS GLY LEU SEQRES 18 A 413 GLU VAL ILE GLU THR HIS LEU LEU PHE GLY ILE PRO TYR SEQRES 19 A 413 ASP ARG ILE ASP VAL VAL VAL HIS PRO GLN SER ILE ILE SEQRES 20 A 413 HIS SER MET VAL THR PHE ILE ASP GLY SER THR ILE ALA SEQRES 21 A 413 GLN ALA SER PRO PRO ASP MET LYS LEU PRO ILE SER LEU SEQRES 22 A 413 ALA LEU GLY TRP PRO ARG ARG VAL SER GLY ALA ALA ALA SEQRES 23 A 413 ALA CYS ASP PHE HIS THR ALA SER SER TRP GLU PHE GLU SEQRES 24 A 413 PRO LEU ASP THR ASP VAL PHE PRO ALA VAL GLU LEU ALA SEQRES 25 A 413 ARG GLN ALA GLY VAL ALA GLY GLY CYS MET THR ALA VAL SEQRES 26 A 413 TYR ASN ALA ALA ASN GLU GLU ALA ALA ALA ALA PHE LEU SEQRES 27 A 413 ALA GLY ARG ILE GLY PHE PRO ALA ILE VAL GLY ILE ILE SEQRES 28 A 413 ALA ASP VAL LEU HIS ALA ALA ASP GLN TRP ALA VAL GLU SEQRES 29 A 413 PRO ALA THR VAL ASP ASP VAL LEU ASP ALA GLN ARG TRP SEQRES 30 A 413 ALA ARG GLU ARG ALA GLN ARG ALA VAL SER GLY MET ALA SEQRES 31 A 413 SER VAL ALA ILE ALA SER THR ALA LYS PRO GLY ALA ALA SEQRES 32 A 413 GLY ARG HIS ALA SER THR LEU GLU ARG SER SEQRES 1 B 413 MET THR ASN SER THR ASP GLY ARG ALA ASP GLY ARG LEU SEQRES 2 B 413 ARG VAL VAL VAL LEU GLY SER THR GLY SER ILE GLY THR SEQRES 3 B 413 GLN ALA LEU GLN VAL ILE ALA ASP ASN PRO ASP ARG PHE SEQRES 4 B 413 GLU VAL VAL GLY LEU ALA ALA GLY GLY ALA HIS LEU ASP SEQRES 5 B 413 THR LEU LEU ARG GLN ARG ALA GLN THR GLY VAL THR ASN SEQRES 6 B 413 ILE ALA VAL ALA ASP GLU HIS ALA ALA GLN ARG VAL GLY SEQRES 7 B 413 ASP ILE PRO TYR HIS GLY SER ASP ALA ALA THR ARG LEU SEQRES 8 B 413 VAL GLU GLN THR GLU ALA ASP VAL VAL LEU ASN ALA LEU SEQRES 9 B 413 VAL GLY ALA LEU GLY LEU ARG PRO THR LEU ALA ALA LEU SEQRES 10 B 413 LYS THR GLY ALA ARG LEU ALA LEU ALA ASN LYS GLU SER SEQRES 11 B 413 LEU VAL ALA GLY GLY SER LEU VAL LEU ARG ALA ALA ARG SEQRES 12 B 413 PRO GLY GLN ILE VAL PRO VAL ASP SER GLU HIS SER ALA SEQRES 13 B 413 LEU ALA GLN CYS LEU ARG GLY GLY THR PRO ASP GLU VAL SEQRES 14 B 413 ALA LYS LEU VAL LEU THR ALA SER GLY GLY PRO PHE ARG SEQRES 15 B 413 GLY TRP SER ALA ALA ASP LEU GLU HIS VAL THR PRO GLU SEQRES 16 B 413 GLN ALA GLY ALA HIS PRO THR TRP SER MET GLY PRO MET SEQRES 17 B 413 ASN THR LEU ASN SER ALA SER LEU VAL ASN LYS GLY LEU SEQRES 18 B 413 GLU VAL ILE GLU THR HIS LEU LEU PHE GLY ILE PRO TYR SEQRES 19 B 413 ASP ARG ILE ASP VAL VAL VAL HIS PRO GLN SER ILE ILE SEQRES 20 B 413 HIS SER MET VAL THR PHE ILE ASP GLY SER THR ILE ALA SEQRES 21 B 413 GLN ALA SER PRO PRO ASP MET LYS LEU PRO ILE SER LEU SEQRES 22 B 413 ALA LEU GLY TRP PRO ARG ARG VAL SER GLY ALA ALA ALA SEQRES 23 B 413 ALA CYS ASP PHE HIS THR ALA SER SER TRP GLU PHE GLU SEQRES 24 B 413 PRO LEU ASP THR ASP VAL PHE PRO ALA VAL GLU LEU ALA SEQRES 25 B 413 ARG GLN ALA GLY VAL ALA GLY GLY CYS MET THR ALA VAL SEQRES 26 B 413 TYR ASN ALA ALA ASN GLU GLU ALA ALA ALA ALA PHE LEU SEQRES 27 B 413 ALA GLY ARG ILE GLY PHE PRO ALA ILE VAL GLY ILE ILE SEQRES 28 B 413 ALA ASP VAL LEU HIS ALA ALA ASP GLN TRP ALA VAL GLU SEQRES 29 B 413 PRO ALA THR VAL ASP ASP VAL LEU ASP ALA GLN ARG TRP SEQRES 30 B 413 ALA ARG GLU ARG ALA GLN ARG ALA VAL SER GLY MET ALA SEQRES 31 B 413 SER VAL ALA ILE ALA SER THR ALA LYS PRO GLY ALA ALA SEQRES 32 B 413 GLY ARG HIS ALA SER THR LEU GLU ARG SER HET SO4 A1390 5 HET SO4 B1390 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 HOH *334(H2 O) HELIX 1 1 GLY A 22 ASP A 34 1 13 HELIX 2 2 LEU A 51 THR A 61 1 11 HELIX 3 3 ASP A 70 VAL A 77 1 8 HELIX 4 4 ASP A 86 GLN A 94 1 9 HELIX 5 5 LEU A 108 LYS A 118 1 11 HELIX 6 6 LYS A 128 ALA A 133 1 6 HELIX 7 7 GLY A 135 ALA A 141 1 7 HELIX 8 8 ASP A 151 GLY A 163 1 13 HELIX 9 9 SER A 185 GLU A 190 1 6 HELIX 10 10 THR A 193 ALA A 197 1 5 HELIX 11 11 GLY A 206 ALA A 214 1 9 HELIX 12 12 LEU A 216 PHE A 230 1 15 HELIX 13 13 MET A 267 LEU A 275 1 9 HELIX 14 14 PRO A 307 ALA A 318 1 12 HELIX 15 15 CYS A 321 LEU A 338 1 18 HELIX 16 16 GLY A 343 ALA A 357 1 15 HELIX 17 17 VAL A 368 SER A 387 1 20 HELIX 18 18 GLY B 22 ASP B 34 1 13 HELIX 19 19 LEU B 51 THR B 61 1 11 HELIX 20 20 ASP B 70 VAL B 77 1 8 HELIX 21 21 ASP B 86 GLN B 94 1 9 HELIX 22 22 LEU B 108 LYS B 118 1 11 HELIX 23 23 LYS B 128 ALA B 133 1 6 HELIX 24 24 GLY B 135 ALA B 141 1 7 HELIX 25 25 ASP B 151 GLY B 163 1 13 HELIX 26 26 SER B 185 GLU B 190 1 6 HELIX 27 27 THR B 193 ALA B 197 1 5 HELIX 28 28 GLY B 206 ALA B 214 1 9 HELIX 29 29 LEU B 216 PHE B 230 1 15 HELIX 30 30 MET B 267 LEU B 275 1 9 HELIX 31 31 PRO B 307 ALA B 318 1 12 HELIX 32 32 CYS B 321 LEU B 338 1 18 HELIX 33 33 GLY B 343 ALA B 357 1 15 HELIX 34 34 VAL B 368 SER B 387 1 20 SHEET 1 AA 7 TYR A 82 HIS A 83 0 SHEET 2 AA 7 ASN A 65 VAL A 68 1 O ILE A 66 N TYR A 82 SHEET 3 AA 7 ARG A 38 ALA A 46 1 O LEU A 44 N ALA A 67 SHEET 4 AA 7 LEU A 13 LEU A 18 1 O LEU A 13 N GLU A 40 SHEET 5 AA 7 ASP A 98 ASN A 102 1 O VAL A 99 N VAL A 16 SHEET 6 AA 7 ALA A 121 LEU A 125 1 O ARG A 122 N VAL A 100 SHEET 7 AA 7 GLN A 146 PRO A 149 1 O VAL A 148 N LEU A 125 SHEET 1 AB 8 ARG A 236 VAL A 241 0 SHEET 2 AB 8 ALA A 170 ALA A 176 1 O LEU A 172 N ASP A 238 SHEET 3 AB 8 MET A 250 PHE A 253 -1 O MET A 250 N VAL A 173 SHEET 4 AB 8 SER A 257 ALA A 262 -1 O ILE A 259 N VAL A 251 SHEET 5 AB 8 SER B 257 ALA B 262 -1 O THR B 258 N ALA A 262 SHEET 6 AB 8 MET B 250 PHE B 253 -1 N MET B 250 O ILE B 259 SHEET 7 AB 8 ALA B 170 ALA B 176 -1 N ALA B 170 O THR B 252 SHEET 8 AB 8 ARG B 236 VAL B 241 1 O ASP B 238 N LEU B 174 SHEET 1 AC 2 ALA A 293 PHE A 298 0 SHEET 2 AC 2 ALA B 293 PHE B 298 -1 O SER B 294 N PHE A 298 SHEET 1 BA 7 TYR B 82 HIS B 83 0 SHEET 2 BA 7 ASN B 65 VAL B 68 1 O ILE B 66 N TYR B 82 SHEET 3 BA 7 ARG B 38 ALA B 46 1 O LEU B 44 N ALA B 67 SHEET 4 BA 7 LEU B 13 LEU B 18 1 O LEU B 13 N GLU B 40 SHEET 5 BA 7 ASP B 98 ASN B 102 1 O VAL B 99 N VAL B 16 SHEET 6 BA 7 ALA B 121 LEU B 125 1 O ARG B 122 N VAL B 100 SHEET 7 BA 7 GLN B 146 PRO B 149 1 O VAL B 148 N LEU B 125 CISPEP 1 TRP A 277 PRO A 278 0 4.36 CISPEP 2 TRP B 277 PRO B 278 0 3.83 SITE 1 AC1 7 ALA A 176 SER A 177 SER A 213 ASN A 218 SITE 2 AC1 7 LYS A 219 HOH A2167 HOH A2168 SITE 1 AC2 8 ALA B 176 SER B 177 SER B 213 ASN B 218 SITE 2 AC2 8 LYS B 219 HOH B2164 HOH B2165 HOH B2166 CRYST1 56.931 56.931 238.997 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017565 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017565 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004184 0.00000 MTRIX1 1 -1.000000 -0.001000 0.000200 -0.04660 1 MTRIX2 1 -0.001000 1.000000 0.000900 -0.02990 1 MTRIX3 1 -0.000200 0.000900 -1.000000 35.30260 1