HEADER LYASE 05-DEC-05 2C8J TITLE CRYSTAL STRUCTURE OF FERROCHELATASE HEMH-1 FROM BACILLUS ANTHRACIS, TITLE 2 STR. AMES COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERROCHELATASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ROTOHEME FERRO-LYASE 1, HEME SYNTHETASE 1, HEMH-1; COMPND 5 EC: 4.99.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS ANTHRACIS; SOURCE 3 ORGANISM_TAXID: 198094; SOURCE 4 STRAIN: AMES; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-YSBLIC KEYWDS FERROCHELATASE, IRON METABOLISM, HEME BIOSYNTHESIS, LYASE, METAL- KEYWDS 2 BINDING, PORPHYRIN BIOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR A.MULLER,A.A.LEBEDEV,O.V.MOROZ,E.V.BLAGOVA,V.M.LEVDIKOV,M.J.FOGG, AUTHOR 2 J.A.BRANNIGAN,A.J.WILKINSON,K.S.WILSON REVDAT 4 13-DEC-23 2C8J 1 REMARK REVDAT 3 13-JUL-11 2C8J 1 VERSN REVDAT 2 24-FEB-09 2C8J 1 VERSN REVDAT 1 01-MAY-07 2C8J 0 JRNL AUTH A.MULLER,A.A.LEBEDEV,O.V.MOROZ,E.V.BLAGOVA,V.M.LEVDIKOV, JRNL AUTH 2 M.J.FOGG,J.A.BRANNIGAN,A.J.WILKINSON,K.S.WILSON JRNL TITL CRYSTAL STRUCTURE OF FERROCHELATASE HEMH-1 FROM BACILLUS JRNL TITL 2 ANTHRACIS, STR. AMES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 29222 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1512 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1791 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2890 REMARK 3 BIN FREE R VALUE SET COUNT : 0 REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4880 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 168 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.08000 REMARK 3 B22 (A**2) : 3.04000 REMARK 3 B33 (A**2) : -2.96000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.87000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.380 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.254 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.203 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.878 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4998 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6796 ; 1.040 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 619 ; 4.396 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 228 ;34.421 ;24.386 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 819 ;16.503 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;19.920 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 741 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3838 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2174 ; 0.180 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3397 ; 0.299 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 204 ; 0.134 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 40 ; 0.153 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.165 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3205 ; 0.317 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4988 ; 0.548 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2103 ; 0.753 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1808 ; 1.140 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 311 REMARK 3 ORIGIN FOR THE GROUP (A): 35.2288 1.5114 1.8681 REMARK 3 T TENSOR REMARK 3 T11: -.2349 T22: -.2025 REMARK 3 T33: -.1611 T12: .0080 REMARK 3 T13: .0128 T23: -.0285 REMARK 3 L TENSOR REMARK 3 L11: 2.1889 L22: 2.5962 REMARK 3 L33: 3.4354 L12: .1502 REMARK 3 L13: -.2061 L23: -.0055 REMARK 3 S TENSOR REMARK 3 S11: .0174 S12: -.2141 S13: .0490 REMARK 3 S21: .0754 S22: -.0260 S23: .0875 REMARK 3 S31: .0038 S32: .0438 S33: .0086 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 311 REMARK 3 ORIGIN FOR THE GROUP (A): 10.0639 -1.8029 32.9413 REMARK 3 T TENSOR REMARK 3 T11: -.2000 T22: -.0638 REMARK 3 T33: -.1678 T12: .0231 REMARK 3 T13: .0197 T23: -.0341 REMARK 3 L TENSOR REMARK 3 L11: 2.0791 L22: 2.6053 REMARK 3 L33: 3.8930 L12: .1808 REMARK 3 L13: .3698 L23: -.1955 REMARK 3 S TENSOR REMARK 3 S11: .0969 S12: .1321 S13: -.0597 REMARK 3 S21: -.0558 S22: -.0484 S23: -.0465 REMARK 3 S31: .1599 S32: .1958 S33: -.0485 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2C8J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-DEC-05. REMARK 100 THE DEPOSITION ID IS D_1290026688. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-NOV-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87000 REMARK 200 MONOCHROMATOR : SI MONOCHROMATOR REMARK 200 OPTICS : RH COATED SI MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32162 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 59.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 81.9 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.17000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.4 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.56000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1AK1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MGCL2, 0.1M TRIS PH 8.5, 30% PEG REMARK 280 30K, PH 8.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 54.96350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 INVOLVED IN THE CATALYZES OF THE FERROUS INSERTION INTO REMARK 400 PROTOPORPHYRIN IX. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 GLU A 18 CG CD OE1 OE2 REMARK 470 GLU A 22 CG CD OE1 OE2 REMARK 470 LEU A 42 CD1 CD2 REMARK 470 GLN A 105 CG CD OE1 NE2 REMARK 470 GLU A 130 CG CD OE1 OE2 REMARK 470 ASN A 137 CG OD1 ND2 REMARK 470 GLU A 173 CG CD OE1 OE2 REMARK 470 LYS A 174 CG CD CE NZ REMARK 470 GLU A 243 CG CD OE1 OE2 REMARK 470 LYS A 244 CG CD CE NZ REMARK 470 GLU A 308 CG CD OE1 OE2 REMARK 470 LYS B 2 CG CD CE NZ REMARK 470 LYS B 3 CG CD CE NZ REMARK 470 LYS B 4 CG CD CE NZ REMARK 470 LEU B 42 CG CD1 CD2 REMARK 470 ASP B 75 CG OD1 OD2 REMARK 470 GLU B 76 CG CD OE1 OE2 REMARK 470 GLN B 105 CG CD OE1 NE2 REMARK 470 GLU B 130 CG CD OE1 OE2 REMARK 470 GLU B 173 CG CD OE1 OE2 REMARK 470 LYS B 174 CG CD CE NZ REMARK 470 LYS B 187 CG CD CE NZ REMARK 470 GLU B 243 CG CD OE1 OE2 REMARK 470 LYS B 307 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 2 CD LYS A 2 CE 0.254 REMARK 500 LYS A 2 CE LYS A 2 NZ 0.185 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 76 OE1 - CD - OE2 ANGL. DEV. = -8.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 124 -81.94 -113.18 REMARK 500 TRP A 146 27.85 -149.69 REMARK 500 ASN A 268 -71.59 -95.56 REMARK 500 PHE A 270 -69.73 -92.54 REMARK 500 ASN A 290 -131.97 46.47 REMARK 500 TYR B 124 -81.97 -109.24 REMARK 500 TRP B 146 19.17 -152.25 REMARK 500 SER B 221 33.24 71.28 REMARK 500 ASN B 224 73.04 -108.78 REMARK 500 HIS B 261 -167.45 -106.01 REMARK 500 ASN B 268 -66.97 -106.25 REMARK 500 PHE B 270 -62.46 -98.86 REMARK 500 ASN B 290 -126.27 54.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1C9E RELATED DB: PDB REMARK 900 STRUCTURE OF FERROCHELATASE WITH COPPER(II) N- METHYLMESOPORPHYRIN REMARK 900 COMPLEX BOUND AT THE ACTIVE SITE REMARK 900 RELATED ID: 1DOZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FERROCHELATASE REMARK 900 RELATED ID: 1FJI RELATED DB: PDB REMARK 900 STRUCTURE OF FERROCHELATASE, THEORETICAL MODEL REMARK 900 RELATED ID: 1L8X RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FERROCHELATASE FROM THE YEAST,SACCHAROMYCES REMARK 900 CEREVISIAE, WITH COBALT(II ) AS THE SUBSTRATEION REMARK 900 RELATED ID: 1N0I RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FERROCHELATASE WITH CADMIUM BOUND ATACTIVE SITE DBREF 2C8J A 1 311 UNP Q81U22 HEMH1_BACAN 1 311 DBREF 2C8J B 1 311 UNP Q81U22 HEMH1_BACAN 1 311 SEQRES 1 A 311 MET LYS LYS LYS ILE GLY LEU LEU VAL MET ALA TYR GLY SEQRES 2 A 311 THR PRO TYR LYS GLU GLU ASP ILE GLU ARG TYR TYR THR SEQRES 3 A 311 HIS ILE ARG ARG GLY ARG LYS PRO SER PRO GLU MET LEU SEQRES 4 A 311 GLU ASP LEU THR GLU ARG TYR ARG ALA ILE GLY GLY ILE SEQRES 5 A 311 SER PRO LEU ALA THR ILE THR LEU GLU GLN ALA LYS LYS SEQRES 6 A 311 LEU GLU LYS ARG LEU ASN GLU VAL GLN ASP GLU VAL GLU SEQRES 7 A 311 TYR HIS MET TYR LEU GLY LEU LYS HIS ILE GLU PRO PHE SEQRES 8 A 311 ILE GLU ASP ALA VAL LYS GLU MET HIS ASN ASP GLY ILE SEQRES 9 A 311 GLN ASP ALA ILE ALA LEU VAL LEU ALA PRO HIS TYR SER SEQRES 10 A 311 THR PHE SER VAL LYS SER TYR VAL GLY ARG ALA GLN GLU SEQRES 11 A 311 GLU ALA GLU LYS LEU GLY ASN LEU THR ILE HIS GLY ILE SEQRES 12 A 311 ASP SER TRP TYR LYS GLU PRO LYS PHE ILE GLN TYR TRP SEQRES 13 A 311 VAL ASP ALA VAL LYS SER ILE TYR SER GLY MET SER ASP SEQRES 14 A 311 ALA GLU ARG GLU LYS ALA VAL LEU ILE VAL SER ALA HIS SEQRES 15 A 311 SER LEU PRO GLU LYS ILE ILE ALA MET GLY ASP PRO TYR SEQRES 16 A 311 PRO ASP GLN LEU ASN GLU THR ALA ASP TYR ILE ALA ARG SEQRES 17 A 311 GLY ALA GLU VAL ALA ASN TYR ALA VAL GLY TRP GLN SER SEQRES 18 A 311 ALA GLY ASN THR PRO ASP PRO TRP ILE GLY PRO ASP VAL SEQRES 19 A 311 GLN ASP LEU THR ARG GLU LEU ASN GLU LYS TYR GLY TYR SEQRES 20 A 311 THR SER PHE VAL TYR ALA PRO VAL GLY PHE VAL ALA GLU SEQRES 21 A 311 HIS LEU GLU VAL LEU TYR ASP ASN ASP PHE GLU CYS LYS SEQRES 22 A 311 VAL VAL THR ASP GLU ILE GLY ALA LYS TYR TYR ARG PRO SEQRES 23 A 311 GLU MET PRO ASN ALA SER ASP ALA PHE ILE ASP CYS LEU SEQRES 24 A 311 THR ASP VAL VAL VAL LYS LYS LYS GLU SER VAL MET SEQRES 1 B 311 MET LYS LYS LYS ILE GLY LEU LEU VAL MET ALA TYR GLY SEQRES 2 B 311 THR PRO TYR LYS GLU GLU ASP ILE GLU ARG TYR TYR THR SEQRES 3 B 311 HIS ILE ARG ARG GLY ARG LYS PRO SER PRO GLU MET LEU SEQRES 4 B 311 GLU ASP LEU THR GLU ARG TYR ARG ALA ILE GLY GLY ILE SEQRES 5 B 311 SER PRO LEU ALA THR ILE THR LEU GLU GLN ALA LYS LYS SEQRES 6 B 311 LEU GLU LYS ARG LEU ASN GLU VAL GLN ASP GLU VAL GLU SEQRES 7 B 311 TYR HIS MET TYR LEU GLY LEU LYS HIS ILE GLU PRO PHE SEQRES 8 B 311 ILE GLU ASP ALA VAL LYS GLU MET HIS ASN ASP GLY ILE SEQRES 9 B 311 GLN ASP ALA ILE ALA LEU VAL LEU ALA PRO HIS TYR SER SEQRES 10 B 311 THR PHE SER VAL LYS SER TYR VAL GLY ARG ALA GLN GLU SEQRES 11 B 311 GLU ALA GLU LYS LEU GLY ASN LEU THR ILE HIS GLY ILE SEQRES 12 B 311 ASP SER TRP TYR LYS GLU PRO LYS PHE ILE GLN TYR TRP SEQRES 13 B 311 VAL ASP ALA VAL LYS SER ILE TYR SER GLY MET SER ASP SEQRES 14 B 311 ALA GLU ARG GLU LYS ALA VAL LEU ILE VAL SER ALA HIS SEQRES 15 B 311 SER LEU PRO GLU LYS ILE ILE ALA MET GLY ASP PRO TYR SEQRES 16 B 311 PRO ASP GLN LEU ASN GLU THR ALA ASP TYR ILE ALA ARG SEQRES 17 B 311 GLY ALA GLU VAL ALA ASN TYR ALA VAL GLY TRP GLN SER SEQRES 18 B 311 ALA GLY ASN THR PRO ASP PRO TRP ILE GLY PRO ASP VAL SEQRES 19 B 311 GLN ASP LEU THR ARG GLU LEU ASN GLU LYS TYR GLY TYR SEQRES 20 B 311 THR SER PHE VAL TYR ALA PRO VAL GLY PHE VAL ALA GLU SEQRES 21 B 311 HIS LEU GLU VAL LEU TYR ASP ASN ASP PHE GLU CYS LYS SEQRES 22 B 311 VAL VAL THR ASP GLU ILE GLY ALA LYS TYR TYR ARG PRO SEQRES 23 B 311 GLU MET PRO ASN ALA SER ASP ALA PHE ILE ASP CYS LEU SEQRES 24 B 311 THR ASP VAL VAL VAL LYS LYS LYS GLU SER VAL MET FORMUL 3 HOH *168(H2 O) HELIX 1 1 LYS A 17 GLU A 19 5 3 HELIX 2 2 ASP A 20 ARG A 29 1 10 HELIX 3 3 SER A 35 ILE A 49 1 15 HELIX 4 4 ILE A 52 GLN A 74 1 23 HELIX 5 5 PHE A 91 ASP A 102 1 12 HELIX 6 6 SER A 117 TYR A 124 1 8 HELIX 7 7 TYR A 124 GLY A 136 1 13 HELIX 8 8 GLU A 149 GLY A 166 1 18 HELIX 9 9 SER A 168 LYS A 174 1 7 HELIX 10 10 GLU A 186 GLY A 192 1 7 HELIX 11 11 PRO A 194 GLU A 211 1 18 HELIX 12 12 ASP A 233 TYR A 245 1 13 HELIX 13 13 HIS A 261 TYR A 266 1 6 HELIX 14 14 PHE A 270 GLY A 280 1 11 HELIX 15 15 SER A 292 SER A 309 1 18 HELIX 16 16 LYS B 17 GLU B 19 5 3 HELIX 17 17 ASP B 20 ARG B 29 1 10 HELIX 18 18 SER B 35 ILE B 49 1 15 HELIX 19 19 PRO B 54 ALA B 56 5 3 HELIX 20 20 THR B 57 GLN B 74 1 18 HELIX 21 21 PHE B 91 GLY B 103 1 13 HELIX 22 22 SER B 117 TYR B 124 1 8 HELIX 23 23 TYR B 124 GLY B 136 1 13 HELIX 24 24 GLU B 149 SER B 165 1 17 HELIX 25 25 SER B 168 GLU B 173 1 6 HELIX 26 26 GLU B 186 GLY B 192 1 7 HELIX 27 27 PRO B 194 ALA B 210 1 17 HELIX 28 28 ASP B 233 LYS B 244 1 12 HELIX 29 29 HIS B 261 TYR B 266 1 6 HELIX 30 30 PHE B 270 GLY B 280 1 11 HELIX 31 31 SER B 292 MET B 311 1 20 SHEET 1 AA 4 VAL A 77 LEU A 85 0 SHEET 2 AA 4 LYS A 3 ALA A 11 1 O LYS A 3 N GLU A 78 SHEET 3 AA 4 ASP A 106 VAL A 111 1 O ASP A 106 N GLY A 6 SHEET 4 AA 4 THR A 139 GLY A 142 1 O THR A 139 N ALA A 107 SHEET 1 AB 4 TYR A 215 GLN A 220 0 SHEET 2 AB 4 ALA A 175 HIS A 182 1 O LEU A 177 N ALA A 216 SHEET 3 AB 4 SER A 249 ALA A 253 1 O SER A 249 N VAL A 176 SHEET 4 AB 4 LYS A 282 TYR A 284 1 O LYS A 282 N PHE A 250 SHEET 1 BA 4 GLU B 78 LEU B 85 0 SHEET 2 BA 4 LYS B 4 ALA B 11 1 O ILE B 5 N HIS B 80 SHEET 3 BA 4 ASP B 106 VAL B 111 1 O ASP B 106 N GLY B 6 SHEET 4 BA 4 THR B 139 GLY B 142 1 O THR B 139 N ALA B 107 SHEET 1 BB 4 TYR B 215 GLN B 220 0 SHEET 2 BB 4 ALA B 175 HIS B 182 1 O LEU B 177 N ALA B 216 SHEET 3 BB 4 SER B 249 ALA B 253 1 O SER B 249 N VAL B 176 SHEET 4 BB 4 LYS B 282 TYR B 284 1 O LYS B 282 N PHE B 250 CISPEP 1 GLU A 89 PRO A 90 0 -4.32 CISPEP 2 GLY A 231 PRO A 232 0 5.84 CISPEP 3 GLU B 89 PRO B 90 0 -3.41 CISPEP 4 GLY B 231 PRO B 232 0 2.35 CRYST1 49.931 109.927 59.404 90.00 90.12 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020028 0.000000 0.000042 0.00000 SCALE2 0.000000 0.009097 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016834 0.00000