HEADER TRANSFERASE 12-DEC-05 2C9H TITLE STRUCTURE OF MITOCHONDRIAL BETA-KETOACYL SYNTHASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOCHONDRIAL BETA-KETOACYL SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.3.1.41; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: R3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNIC-BSA4 KEYWDS TRANSFERASE, FATTY ACID SYNTHESIS, MITOCHONDRIA, KETOACYL SYNTHASE EXPDTA X-RAY DIFFRACTION AUTHOR G.BUNKOCZI,X.WU,C.SMEE,O.GILEADI,C.ARROWSMITH,A.EDWARDS,M.SUNDSTROM, AUTHOR 2 J.WEIGELT,F.VON DELFT,U.OPPERMANN REVDAT 7 13-NOV-24 2C9H 1 REMARK REVDAT 6 13-DEC-23 2C9H 1 LINK REVDAT 5 28-FEB-18 2C9H 1 SOURCE REVDAT 4 24-JAN-18 2C9H 1 AUTHOR JRNL REVDAT 3 13-JUL-11 2C9H 1 VERSN REVDAT 2 24-FEB-09 2C9H 1 VERSN REVDAT 1 13-DEC-05 2C9H 0 JRNL AUTH G.BUNKOCZI,X.WU,C.SMEE,O.GILEADI,C.ARROWSMITH,A.EDWARDS, JRNL AUTH 2 M.SUNDSTROM,J.WEIGELT,F.VON DELFT,U.OPPERMANN JRNL TITL STRUCTURE OF MITOCHONDRIAL BETA-KETOACYL SYNTHASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 35421 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1868 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2219 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE SET COUNT : 124 REMARK 3 BIN FREE R VALUE : 0.3500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3107 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 235 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.04000 REMARK 3 B22 (A**2) : 0.73000 REMARK 3 B33 (A**2) : 1.31000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.128 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.137 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.106 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.006 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3207 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2073 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4372 ; 1.461 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5086 ; 0.970 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 430 ; 6.444 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 121 ;37.068 ;23.967 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 477 ;14.775 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;12.962 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 505 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3662 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 637 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 668 ; 0.205 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2174 ; 0.202 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1596 ; 0.177 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1688 ; 0.090 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 201 ; 0.189 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 23 ; 0.225 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 91 ; 0.231 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 21 ; 0.208 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2164 ; 3.952 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3386 ; 5.002 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1163 ; 8.077 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 984 ;10.058 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 444 REMARK 3 ORIGIN FOR THE GROUP (A): 44.0365 2.7891 6.5510 REMARK 3 T TENSOR REMARK 3 T11: 0.0049 T22: -0.0211 REMARK 3 T33: -0.0244 T12: 0.0045 REMARK 3 T13: -0.0018 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 0.4923 L22: 0.0597 REMARK 3 L33: 0.1375 L12: -0.1283 REMARK 3 L13: -0.0396 L23: 0.0143 REMARK 3 S TENSOR REMARK 3 S11: -0.0092 S12: -0.0626 S13: 0.0059 REMARK 3 S21: -0.0132 S22: 0.0131 S23: -0.0137 REMARK 3 S31: -0.0058 S32: -0.0142 S33: -0.0039 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2C9H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-DEC-05. REMARK 100 THE DEPOSITION ID IS D_1290026774. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978978 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37336 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 41.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 12.79 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.9500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.19 REMARK 200 R MERGE FOR SHELL (I) : 0.57000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.270 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1W0I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH=5.5, 25% PEG3350, REMARK 280 0.20 M NH4AC, PH 5.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 58.36250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.02800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 58.36250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.02800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 116.72500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 GLY A 10 REMARK 465 VAL A 11 REMARK 465 ASP A 12 REMARK 465 LEU A 13 REMARK 465 GLY A 14 REMARK 465 THR A 15 REMARK 465 GLU A 16 REMARK 465 ASN A 17 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 18 CG CD1 CD2 REMARK 470 TYR A 19 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN A 21 CG CD OE1 NE2 REMARK 470 GLU A 64 CG CD OE1 OE2 REMARK 470 LYS A 67 CG CD CE NZ REMARK 470 LYS A 94 CG CD CE NZ REMARK 470 LYS A 98 CG CD CE NZ REMARK 470 GLU A 147 CG CD OE1 OE2 REMARK 470 GLN A 153 CG CD OE1 NE2 REMARK 470 LYS A 155 CG CD CE NZ REMARK 470 LYS A 159 CD CE NZ REMARK 470 ARG A 180 CD NE CZ NH1 NH2 REMARK 470 ARG A 237 CD NE CZ NH1 NH2 REMARK 470 LYS A 246 CG CD CE NZ REMARK 470 LYS A 255 CE NZ REMARK 470 GLN A 278 CG CD OE1 NE2 REMARK 470 GLU A 420 CG CD OE1 OE2 REMARK 470 LYS A 421 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 416 O HOH A 2226 2.13 REMARK 500 O HOH A 2172 O HOH A 2174 2.15 REMARK 500 OH TYR A 388 O HOH A 2202 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 193 -127.49 56.54 REMARK 500 SER A 223 75.71 -155.91 REMARK 500 ASP A 257 30.94 -148.46 REMARK 500 ALA A 334 104.05 -17.08 REMARK 500 SER A 336 39.78 82.20 REMARK 500 LYS A 353 -130.40 56.38 REMARK 500 LEU A 372 -117.77 61.40 REMARK 500 LEU A 412 -37.90 75.21 REMARK 500 TRP A 417 56.34 -154.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2016 DISTANCE = 7.06 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A1445 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 26 NE2 REMARK 620 2 HIS A 210 ND1 108.1 REMARK 620 3 HOH A2003 O 105.3 114.6 REMARK 620 4 HOH A2127 O 158.9 85.4 82.5 REMARK 620 N 1 2 3 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A1445 DBREF 2C9H A 1 23 PDB 2C9H 2C9H 1 23 DBREF 2C9H A 24 444 UNP Q9NWU1 Q9NWU1_HUMAN 39 459 SEQRES 1 A 444 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 444 GLY THR GLU ASN LEU TYR PHE GLN SER MET ARG LEU HIS SEQRES 3 A 444 ARG ARG VAL VAL ILE THR GLY ILE GLY LEU VAL THR PRO SEQRES 4 A 444 LEU GLY VAL GLY THR HIS LEU VAL TRP ASP ARG LEU ILE SEQRES 5 A 444 GLY GLY GLU SER GLY ILE VAL SER LEU VAL GLY GLU GLU SEQRES 6 A 444 TYR LYS SER ILE PRO CYS SER VAL ALA ALA TYR VAL PRO SEQRES 7 A 444 ARG GLY SER ASP GLU GLY GLN PHE ASN GLU GLN ASN PHE SEQRES 8 A 444 VAL SER LYS SER ASP ILE LYS SER MET SER SER PRO THR SEQRES 9 A 444 ILE MET ALA ILE GLY ALA ALA GLU LEU ALA MET LYS ASP SEQRES 10 A 444 SER GLY TRP HIS PRO GLN SER GLU ALA ASP GLN VAL ALA SEQRES 11 A 444 THR GLY VAL ALA ILE GLY MET GLY MET ILE PRO LEU GLU SEQRES 12 A 444 VAL VAL SER GLU THR ALA LEU ASN PHE GLN THR LYS GLY SEQRES 13 A 444 TYR ASN LYS VAL SER PRO PHE PHE VAL PRO LYS ILE LEU SEQRES 14 A 444 VAL ASN MET ALA ALA GLY GLN VAL SER ILE ARG TYR LYS SEQRES 15 A 444 LEU LYS GLY PRO ASN HIS ALA VAL SER THR ALA CSD THR SEQRES 16 A 444 THR GLY ALA HIS ALA VAL GLY ASP SER PHE ARG PHE ILE SEQRES 17 A 444 ALA HIS GLY ASP ALA ASP VAL MET VAL ALA GLY GLY THR SEQRES 18 A 444 ASP SER CYS ILE SER PRO LEU SER LEU ALA GLY PHE SER SEQRES 19 A 444 ARG ALA ARG ALA LEU SER THR ASN SER ASP PRO LYS LEU SEQRES 20 A 444 ALA CYS ARG PRO PHE HIS PRO LYS ARG ASP GLY PHE VAL SEQRES 21 A 444 MET GLY GLU GLY ALA ALA VAL LEU VAL LEU GLU GLU TYR SEQRES 22 A 444 GLU HIS ALA VAL GLN ARG ARG ALA ARG ILE TYR ALA GLU SEQRES 23 A 444 VAL LEU GLY TYR GLY LEU SER GLY ASP ALA GLY HIS ILE SEQRES 24 A 444 THR ALA PRO ASP PRO GLU GLY GLU GLY ALA LEU ARG CYS SEQRES 25 A 444 MET ALA ALA ALA LEU LYS ASP ALA GLY VAL GLN PRO GLU SEQRES 26 A 444 GLU ILE SER TYR ILE ASN ALA HIS ALA THR SER THR PRO SEQRES 27 A 444 LEU GLY ASP ALA ALA GLU ASN LYS ALA ILE LYS HIS LEU SEQRES 28 A 444 PHE LYS ASP HIS ALA TYR ALA LEU ALA VAL SER SER THR SEQRES 29 A 444 LYS GLY ALA THR GLY HIS LEU LEU GLY ALA ALA GLY ALA SEQRES 30 A 444 VAL GLU ALA ALA PHE THR THR LEU ALA CYS TYR TYR GLN SEQRES 31 A 444 LYS LEU PRO PRO THR LEU ASN LEU ASP CYS SER GLU PRO SEQRES 32 A 444 GLU PHE ASP LEU ASN TYR VAL PRO LEU LYS ALA GLN GLU SEQRES 33 A 444 TRP LYS THR GLU LYS ARG PHE ILE GLY LEU THR ASN SER SEQRES 34 A 444 PHE GLY PHE GLY GLY THR ASN ALA THR LEU CYS ILE ALA SEQRES 35 A 444 GLY LEU MODRES 2C9H CSD A 194 CYS 3-SULFINOALANINE HET CSD A 194 8 HET NI A1445 1 HETNAM CSD 3-SULFINOALANINE HETNAM NI NICKEL (II) ION HETSYN CSD S-CYSTEINESULFINIC ACID; S-SULFINOCYSTEINE FORMUL 1 CSD C3 H7 N O4 S FORMUL 2 NI NI 2+ FORMUL 3 HOH *235(H2 O) HELIX 1 1 GLY A 43 GLY A 53 1 11 HELIX 2 2 GLY A 63 LYS A 67 5 5 HELIX 3 3 ASN A 87 PHE A 91 5 5 HELIX 4 4 SER A 95 MET A 100 1 6 HELIX 5 5 SER A 101 GLY A 119 1 19 HELIX 6 6 SER A 124 ALA A 130 1 7 HELIX 7 7 PRO A 141 GLY A 156 1 16 HELIX 8 8 TYR A 157 VAL A 160 5 4 HELIX 9 9 PHE A 163 LEU A 169 1 7 HELIX 10 10 ASN A 171 LYS A 182 1 12 HELIX 11 11 THR A 192 CSD A 194 5 3 HELIX 12 12 THR A 195 GLY A 211 1 17 HELIX 13 13 SER A 226 ALA A 236 1 11 HELIX 14 14 TYR A 273 ARG A 280 1 8 HELIX 15 15 GLY A 306 GLY A 321 1 16 HELIX 16 16 GLN A 323 GLU A 325 5 3 HELIX 17 17 THR A 337 LYS A 353 1 17 HELIX 18 18 ASP A 354 ALA A 358 5 5 HELIX 19 19 THR A 364 GLY A 369 1 6 HELIX 20 20 LEU A 371 GLY A 373 5 3 HELIX 21 21 ALA A 374 GLN A 390 1 17 SHEET 1 AA 7 GLY A 41 VAL A 42 0 SHEET 2 AA 7 VAL A 29 THR A 38 -1 O THR A 38 N GLY A 41 SHEET 3 AA 7 ALA A 285 GLY A 294 -1 O ALA A 285 N ILE A 31 SHEET 4 AA 7 THR A 435 ALA A 442 -1 O ASN A 436 N SER A 293 SHEET 5 AA 7 ILE A 424 GLY A 431 -1 O GLY A 425 N ILE A 441 SHEET 6 AA 7 ILE A 327 ASN A 331 1 N SER A 328 O ILE A 424 SHEET 7 AA 7 ALA A 360 SER A 362 1 O ALA A 360 N ILE A 330 SHEET 1 AB 6 GLY A 41 VAL A 42 0 SHEET 2 AB 6 VAL A 29 THR A 38 -1 O THR A 38 N GLY A 41 SHEET 3 AB 6 GLY A 264 GLU A 272 -1 O ALA A 265 N VAL A 37 SHEET 4 AB 6 VAL A 215 ASP A 222 -1 O MET A 216 N LEU A 270 SHEET 5 AB 6 THR A 131 MET A 137 1 O GLY A 132 N VAL A 217 SHEET 6 AB 6 ASN A 187 HIS A 188 1 O HIS A 188 N ILE A 135 SHEET 1 AC 2 ILE A 58 SER A 60 0 SHEET 2 AC 2 VAL A 73 ALA A 75 -1 O ALA A 74 N VAL A 59 SHEET 1 AD 2 LYS A 391 LEU A 392 0 SHEET 2 AD 2 GLN A 415 GLU A 416 -1 O GLN A 415 N LEU A 392 LINK C ALA A 193 N CSD A 194 1555 1555 1.33 LINK C CSD A 194 N THR A 195 1555 1555 1.33 LINK NE2 HIS A 26 NI NI A1445 2655 1555 2.17 LINK ND1 HIS A 210 NI NI A1445 1555 1555 1.96 LINK NI NI A1445 O HOH A2003 1555 1555 2.10 LINK NI NI A1445 O HOH A2127 1555 1555 2.53 SITE 1 AC1 4 HIS A 26 HIS A 210 HOH A2003 HOH A2127 CRYST1 116.725 58.056 58.987 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008567 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017225 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016953 0.00000