data_2C9L # _entry.id 2C9L # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.382 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2C9L pdb_00002c9l 10.2210/pdb2c9l/pdb PDBE EBI-26813 ? ? WWPDB D_1290026813 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1ZSD unspecified 'CRYSTAL STRUCTURE OF HLA-B*3501 PRESENTING AN 11-MER EBVANTIGEN EPLPQGQLTAY' PDB 2AXF unspecified 'THE IMMUNOGENICITY OF A VIRAL CYTOTOXIC T CELL EPITOPE ISCONTROLLED BY ITS MHC-BOUND CONFORMATION' PDB 2AXG unspecified 'THE IMMUNOGENICITY OF A VIRAL CYTOTOXIC T CELL EPITOPE ISCONTROLLED BY ITS MHC-BOUND CONFORMATION' PDB 2C9N unspecified 'STRUCTURE OF THE EPSTEIN-BARR VIRUS ZEBRA PROTEIN AT APPROXIMATELY 3.5 ANGSTROM RESOLUTION' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2C9L _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2005-12-13 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Petosa, C.' 1 'Morand, P.' 2 'Baudin, F.' 3 'Moulin, M.' 4 'Artero, J.B.' 5 'Muller, C.W.' 6 # _citation.id primary _citation.title 'Structural Basis of Lytic Cycle Activation by the Epstein-Barr Virus Zebra Protein' _citation.journal_abbrev Mol.Cell _citation.journal_volume 21 _citation.page_first 565 _citation.page_last ? _citation.year 2006 _citation.journal_id_ASTM MOCEFL _citation.country US _citation.journal_id_ISSN 1097-2765 _citation.journal_id_CSD 2168 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16483937 _citation.pdbx_database_id_DOI 10.1016/J.MOLCEL.2006.01.006 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Petosa, C.' 1 ? primary 'Morand, P.' 2 ? primary 'Baudin, F.' 3 ? primary 'Moulin, M.' 4 ? primary 'Artero, J.B.' 5 ? primary 'Muller, C.W.' 6 ? # _cell.entry_id 2C9L _cell.length_a 94.170 _cell.length_b 26.520 _cell.length_c 98.090 _cell.angle_alpha 90.00 _cell.angle_beta 103.95 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2C9L _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;5'-D(*AP*AP*GP*CP*AP*CP*TP*GP*AP*CP *TP*CP*AP*TP*GP*AP*AP*GP*T)-3' ; 5837.812 1 ? ? ? ? 2 polymer syn ;5'-D(*AP*CP*TP*TP*CP*AP*CP*TP*GP*AP *GP*TP*CP*AP*GP*TP*GP*CP*T)-3' ; 5506.577 1 ? ? ? ? 3 polymer man 'BZLF1 TRANS-ACTIVATOR PROTEIN' 7413.740 2 ? YES 'DNA-BINDING AND DIMERIZATION DOMAIN, RESIDUES 175-236' ? 4 water nat water 18.015 81 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name 'EB1, ZEBRA' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DA)(DA)(DG)(DC)(DA)(DC)(DT)(DG)(DA)(DC)(DT)(DC)(DA)(DT)(DG)(DA)(DA)(DG)(DT)' AAGCACTGACTCATGAAGT A ? 2 polydeoxyribonucleotide no no '(DA)(DC)(DT)(DT)(DC)(DA)(DT)(DG)(DA)(DG)(DT)(DC)(DA)(DG)(DT)(DG)(DC)(DT)' ACTTCATGAGTCAGTGCT B ? 3 'polypeptide(L)' no no MLEIKRYKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRLRLLLKQMCPSLDVDSIIPRTPD MLEIKRYKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRLRLLLKQMCPSLDVDSIIPRTPD Y,Z ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DA n 1 3 DG n 1 4 DC n 1 5 DA n 1 6 DC n 1 7 DT n 1 8 DG n 1 9 DA n 1 10 DC n 1 11 DT n 1 12 DC n 1 13 DA n 1 14 DT n 1 15 DG n 1 16 DA n 1 17 DA n 1 18 DG n 1 19 DT n 2 1 DA n 2 2 DC n 2 3 DT n 2 4 DT n 2 5 DC n 2 6 DA n 2 7 DT n 2 8 DG n 2 9 DA n 2 10 DG n 2 11 DT n 2 12 DC n 2 13 DA n 2 14 DG n 2 15 DT n 2 16 DG n 2 17 DC n 2 18 DT n 3 1 MET n 3 2 LEU n 3 3 GLU n 3 4 ILE n 3 5 LYS n 3 6 ARG n 3 7 TYR n 3 8 LYS n 3 9 ASN n 3 10 ARG n 3 11 VAL n 3 12 ALA n 3 13 ALA n 3 14 ARG n 3 15 LYS n 3 16 SER n 3 17 ARG n 3 18 ALA n 3 19 LYS n 3 20 PHE n 3 21 LYS n 3 22 GLN n 3 23 LEU n 3 24 LEU n 3 25 GLN n 3 26 HIS n 3 27 TYR n 3 28 ARG n 3 29 GLU n 3 30 VAL n 3 31 ALA n 3 32 ALA n 3 33 ALA n 3 34 LYS n 3 35 SER n 3 36 SER n 3 37 GLU n 3 38 ASN n 3 39 ASP n 3 40 ARG n 3 41 LEU n 3 42 ARG n 3 43 LEU n 3 44 LEU n 3 45 LEU n 3 46 LYS n 3 47 GLN n 3 48 MET n 3 49 CYS n 3 50 PRO n 3 51 SER n 3 52 LEU n 3 53 ASP n 3 54 VAL n 3 55 ASP n 3 56 SER n 3 57 ILE n 3 58 ILE n 3 59 PRO n 3 60 ARG n 3 61 THR n 3 62 PRO n 3 63 ASP n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HUMAN HERPESVIRUS 4' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10376 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? 'HUMAN HERPESVIRUS 4' ? 10376 ? 2 1 sample ? ? 'HUMAN HERPESVIRUS 4' ? 10376 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 2C9L 1 ? ? 2C9L ? 2 PDB 2C9L 2 ? ? 2C9L ? 3 PDB 2C9L 3 ? ? 2C9L ? 4 UNP BZLF1_EBV 3 ? ? P03206 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2C9L A 1 ? 19 ? 2C9L 1 ? 19 ? 1 19 2 2 2C9L B 1 ? 18 ? 2C9L 102 ? 119 ? 102 119 3 3 2C9L Y 1 ? 1 ? 2C9L 174 ? 174 ? 174 174 4 4 2C9L Y 2 ? 63 ? P03206 175 ? 236 ? 175 236 5 3 2C9L Z 1 ? 1 ? 2C9L 174 ? 174 ? 174 174 6 4 2C9L Z 2 ? 63 ? P03206 175 ? 236 ? 175 236 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 3 2C9L ALA Y 13 ? UNP P03206 SER 186 'engineered mutation' 186 1 5 2C9L ALA Z 13 ? UNP P03206 SER 186 'engineered mutation' 186 2 3 2C9L SER Y 16 ? UNP P03206 CYS 189 'engineered mutation' 189 3 5 2C9L SER Z 16 ? UNP P03206 CYS 189 'engineered mutation' 189 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2C9L _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.26 _exptl_crystal.density_percent_sol 45.16 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.00 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'pH 7.00' # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2004-09-11 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9755 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID13' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID13 _diffrn_source.pdbx_wavelength 0.9755 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2C9L _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.000 _reflns.d_resolution_high 2.250 _reflns.number_obs 11609 _reflns.number_all ? _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.09000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 11.1000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.300 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.25 _reflns_shell.d_res_low 2.30 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs 0.45000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.400 _reflns_shell.pdbx_redundancy 5.40 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2C9L _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 11608 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 10000 _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30 _refine.ls_d_res_high 2.25 _refine.ls_percent_reflns_obs 99.9 _refine.ls_R_factor_obs 0.2317 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2317 _refine.ls_R_factor_R_free 0.2644 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 592 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] -4.577 _refine.aniso_B[2][2] 5.472 _refine.aniso_B[3][3] -0.895 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 5.368 _refine.aniso_B[2][3] 0.000 _refine.solvent_model_details ? _refine.solvent_model_param_ksol 0.335561 _refine.solvent_model_param_bsol 56.8112 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;THERE IS NO SIDE CHAIN DENSITY VISIBLE FOR RESIDUES LEU175 AND GLU176 IN CHAIN Z. ONLY THE MAIN CHAIN ATOMS OF THESE RESIDUES ARE INCLUDED IN THE MODEL. ; _refine.pdbx_starting_model 'PDB ENTRY 1YSA' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1019 _refine_hist.pdbx_number_atoms_nucleic_acid 756 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 81 _refine_hist.number_atoms_total 1856 _refine_hist.d_res_high 2.25 _refine_hist.d_res_low 30 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.2 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # loop_ _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 'X-RAY DIFFRACTION' 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 WATER_REP.PARAM WATER.TOP 'X-RAY DIFFRACTION' 3 DNA-RNA_REP.PARAM DNA-RNA.TOP # _struct.entry_id 2C9L _struct.title 'Structure of the Epstein-Barr virus ZEBRA protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2C9L _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' _struct_keywords.text ;VIRAL PROTEIN, EPSTEIN-BARR VIRUS, EBV, ZEBRA, BZLF1, ZTA, Z, LYTIC CYCLE ACTIVATION, BZIP PROTEIN, VIRAL PROTEIN DNA-BINDING, NUCLEAR PROTEIN, TRANSCRIPTION REGULATION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 MET C 1 ? CYS C 49 ? MET Y 174 CYS Y 222 1 ? 49 HELX_P HELX_P2 2 ASP C 53 ? ILE C 58 ? ASP Y 226 ILE Y 231 1 ? 6 HELX_P HELX_P3 3 LYS D 5 ? CYS D 49 ? LYS Z 178 CYS Z 222 1 ? 45 HELX_P HELX_P4 4 ASP D 53 ? ILE D 57 ? ASP Z 226 ILE Z 230 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DA 2 N1 ? ? ? 1_555 B DT 18 N3 ? ? A DA 2 B DT 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DA 2 N6 ? ? ? 1_555 B DT 18 O4 ? ? A DA 2 B DT 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 17 N3 ? ? A DG 3 B DC 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 17 O2 ? ? A DG 3 B DC 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 17 N4 ? ? A DG 3 B DC 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 16 N1 ? ? A DC 4 B DG 117 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 16 O6 ? ? A DC 4 B DG 117 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 16 N2 ? ? A DC 4 B DG 117 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 15 N3 ? ? A DA 5 B DT 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 15 O4 ? ? A DA 5 B DT 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 14 N1 ? ? A DC 6 B DG 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 14 O6 ? ? A DC 6 B DG 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 14 N2 ? ? A DC 6 B DG 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 13 N1 ? ? A DT 7 B DA 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 13 N6 ? ? A DT 7 B DA 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 12 N3 ? ? A DG 8 B DC 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 12 O2 ? ? A DG 8 B DC 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 12 N4 ? ? A DG 8 B DC 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DA 9 N1 ? ? ? 1_555 B DT 11 N3 ? ? A DA 9 B DT 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DA 9 N6 ? ? ? 1_555 B DT 11 O4 ? ? A DA 9 B DT 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 10 B DG 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 10 B DG 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 10 B DG 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DT 11 N3 ? ? ? 1_555 B DA 9 N1 ? ? A DT 11 B DA 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DT 11 O4 ? ? ? 1_555 B DA 9 N6 ? ? A DT 11 B DA 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 12 N3 ? ? ? 1_555 B DG 8 N1 ? ? A DC 12 B DG 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 12 N4 ? ? ? 1_555 B DG 8 O6 ? ? A DC 12 B DG 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 12 O2 ? ? ? 1_555 B DG 8 N2 ? ? A DC 12 B DG 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DA 13 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 13 B DT 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DA 13 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 13 B DT 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DT 14 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 14 B DA 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DT 14 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 14 B DA 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DG 15 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 15 B DC 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DG 15 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 15 B DC 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DG 15 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 15 B DC 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DA 16 N1 ? ? ? 1_555 B DT 4 N3 ? ? A DA 16 B DT 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DA 16 N6 ? ? ? 1_555 B DT 4 O4 ? ? A DA 16 B DT 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DA 17 N1 ? ? ? 1_555 B DT 3 N3 ? ? A DA 17 B DT 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DA 17 N6 ? ? ? 1_555 B DT 3 O4 ? ? A DA 17 B DT 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DG 18 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 18 B DC 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DG 18 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 18 B DC 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A DG 18 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 18 B DC 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A DT 19 N3 ? ? ? 1_555 B DA 1 N1 ? ? A DT 19 B DA 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A DT 19 O4 ? ? ? 1_555 B DA 1 N6 ? ? A DT 19 B DA 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 2C9L _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2C9L _atom_sites.fract_transf_matrix[1][1] 0.010619 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002638 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.037707 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010505 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA DA A . n A 1 2 DA 2 2 2 DA DA A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DC 4 4 4 DC DC A . n A 1 5 DA 5 5 5 DA DA A . n A 1 6 DC 6 6 6 DC DC A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 DG 8 8 8 DG DG A . n A 1 9 DA 9 9 9 DA DA A . n A 1 10 DC 10 10 10 DC DC A . n A 1 11 DT 11 11 11 DT DT A . n A 1 12 DC 12 12 12 DC DC A . n A 1 13 DA 13 13 13 DA DA A . n A 1 14 DT 14 14 14 DT DT A . n A 1 15 DG 15 15 15 DG DG A . n A 1 16 DA 16 16 16 DA DA A . n A 1 17 DA 17 17 17 DA DA A . n A 1 18 DG 18 18 18 DG DG A . n A 1 19 DT 19 19 19 DT DT A . n B 2 1 DA 1 102 102 DA DA B . n B 2 2 DC 2 103 103 DC DC B . n B 2 3 DT 3 104 104 DT DT B . n B 2 4 DT 4 105 105 DT DT B . n B 2 5 DC 5 106 106 DC DC B . n B 2 6 DA 6 107 107 DA DA B . n B 2 7 DT 7 108 108 DT DT B . n B 2 8 DG 8 109 109 DG DG B . n B 2 9 DA 9 110 110 DA DA B . n B 2 10 DG 10 111 111 DG DG B . n B 2 11 DT 11 112 112 DT DT B . n B 2 12 DC 12 113 113 DC DC B . n B 2 13 DA 13 114 114 DA DA B . n B 2 14 DG 14 115 115 DG DG B . n B 2 15 DT 15 116 116 DT DT B . n B 2 16 DG 16 117 117 DG DG B . n B 2 17 DC 17 118 118 DC DC B . n B 2 18 DT 18 119 119 DT DT B . n C 3 1 MET 1 174 174 MET MET Y . n C 3 2 LEU 2 175 175 LEU LEU Y . n C 3 3 GLU 3 176 176 GLU GLU Y . n C 3 4 ILE 4 177 177 ILE ILE Y . n C 3 5 LYS 5 178 178 LYS LYS Y . n C 3 6 ARG 6 179 179 ARG ARG Y . n C 3 7 TYR 7 180 180 TYR TYR Y . n C 3 8 LYS 8 181 181 LYS LYS Y . n C 3 9 ASN 9 182 182 ASN ASN Y . n C 3 10 ARG 10 183 183 ARG ARG Y . n C 3 11 VAL 11 184 184 VAL VAL Y . n C 3 12 ALA 12 185 185 ALA ALA Y . n C 3 13 ALA 13 186 186 ALA ALA Y . n C 3 14 ARG 14 187 187 ARG ARG Y . n C 3 15 LYS 15 188 188 LYS LYS Y . n C 3 16 SER 16 189 189 SER SER Y . n C 3 17 ARG 17 190 190 ARG ARG Y . n C 3 18 ALA 18 191 191 ALA ALA Y . n C 3 19 LYS 19 192 192 LYS LYS Y . n C 3 20 PHE 20 193 193 PHE PHE Y . n C 3 21 LYS 21 194 194 LYS LYS Y . n C 3 22 GLN 22 195 195 GLN GLN Y . n C 3 23 LEU 23 196 196 LEU LEU Y . n C 3 24 LEU 24 197 197 LEU LEU Y . n C 3 25 GLN 25 198 198 GLN GLN Y . n C 3 26 HIS 26 199 199 HIS HIS Y . n C 3 27 TYR 27 200 200 TYR TYR Y . n C 3 28 ARG 28 201 201 ARG ARG Y . n C 3 29 GLU 29 202 202 GLU GLU Y . n C 3 30 VAL 30 203 203 VAL VAL Y . n C 3 31 ALA 31 204 204 ALA ALA Y . n C 3 32 ALA 32 205 205 ALA ALA Y . n C 3 33 ALA 33 206 206 ALA ALA Y . n C 3 34 LYS 34 207 207 LYS LYS Y . n C 3 35 SER 35 208 208 SER SER Y . n C 3 36 SER 36 209 209 SER SER Y . n C 3 37 GLU 37 210 210 GLU GLU Y . n C 3 38 ASN 38 211 211 ASN ASN Y . n C 3 39 ASP 39 212 212 ASP ASP Y . n C 3 40 ARG 40 213 213 ARG ARG Y . n C 3 41 LEU 41 214 214 LEU LEU Y . n C 3 42 ARG 42 215 215 ARG ARG Y . n C 3 43 LEU 43 216 216 LEU LEU Y . n C 3 44 LEU 44 217 217 LEU LEU Y . n C 3 45 LEU 45 218 218 LEU LEU Y . n C 3 46 LYS 46 219 219 LYS LYS Y . n C 3 47 GLN 47 220 220 GLN GLN Y . n C 3 48 MET 48 221 221 MET MET Y . n C 3 49 CYS 49 222 222 CYS CYS Y . n C 3 50 PRO 50 223 223 PRO PRO Y . n C 3 51 SER 51 224 224 SER SER Y . n C 3 52 LEU 52 225 225 LEU LEU Y . n C 3 53 ASP 53 226 226 ASP ASP Y . n C 3 54 VAL 54 227 227 VAL VAL Y . n C 3 55 ASP 55 228 228 ASP ASP Y . n C 3 56 SER 56 229 229 SER SER Y . n C 3 57 ILE 57 230 230 ILE ILE Y . n C 3 58 ILE 58 231 231 ILE ILE Y . n C 3 59 PRO 59 232 232 PRO PRO Y . n C 3 60 ARG 60 233 233 ARG ARG Y . n C 3 61 THR 61 234 234 THR THR Y . n C 3 62 PRO 62 235 235 PRO PRO Y . n C 3 63 ASP 63 236 236 ASP ASP Y . n D 3 1 MET 1 174 ? ? ? Z . n D 3 2 LEU 2 175 175 LEU LEU Z . n D 3 3 GLU 3 176 176 GLU GLU Z . n D 3 4 ILE 4 177 177 ILE ILE Z . n D 3 5 LYS 5 178 178 LYS LYS Z . n D 3 6 ARG 6 179 179 ARG ARG Z . n D 3 7 TYR 7 180 180 TYR TYR Z . n D 3 8 LYS 8 181 181 LYS LYS Z . n D 3 9 ASN 9 182 182 ASN ASN Z . n D 3 10 ARG 10 183 183 ARG ARG Z . n D 3 11 VAL 11 184 184 VAL VAL Z . n D 3 12 ALA 12 185 185 ALA ALA Z . n D 3 13 ALA 13 186 186 ALA ALA Z . n D 3 14 ARG 14 187 187 ARG ARG Z . n D 3 15 LYS 15 188 188 LYS LYS Z . n D 3 16 SER 16 189 189 SER SER Z . n D 3 17 ARG 17 190 190 ARG ARG Z . n D 3 18 ALA 18 191 191 ALA ALA Z . n D 3 19 LYS 19 192 192 LYS LYS Z . n D 3 20 PHE 20 193 193 PHE PHE Z . n D 3 21 LYS 21 194 194 LYS LYS Z . n D 3 22 GLN 22 195 195 GLN GLN Z . n D 3 23 LEU 23 196 196 LEU LEU Z . n D 3 24 LEU 24 197 197 LEU LEU Z . n D 3 25 GLN 25 198 198 GLN GLN Z . n D 3 26 HIS 26 199 199 HIS HIS Z . n D 3 27 TYR 27 200 200 TYR TYR Z . n D 3 28 ARG 28 201 201 ARG ARG Z . n D 3 29 GLU 29 202 202 GLU GLU Z . n D 3 30 VAL 30 203 203 VAL VAL Z . n D 3 31 ALA 31 204 204 ALA ALA Z . n D 3 32 ALA 32 205 205 ALA ALA Z . n D 3 33 ALA 33 206 206 ALA ALA Z . n D 3 34 LYS 34 207 207 LYS LYS Z . n D 3 35 SER 35 208 208 SER SER Z . n D 3 36 SER 36 209 209 SER SER Z . n D 3 37 GLU 37 210 210 GLU GLU Z . n D 3 38 ASN 38 211 211 ASN ASN Z . n D 3 39 ASP 39 212 212 ASP ASP Z . n D 3 40 ARG 40 213 213 ARG ARG Z . n D 3 41 LEU 41 214 214 LEU LEU Z . n D 3 42 ARG 42 215 215 ARG ARG Z . n D 3 43 LEU 43 216 216 LEU LEU Z . n D 3 44 LEU 44 217 217 LEU LEU Z . n D 3 45 LEU 45 218 218 LEU LEU Z . n D 3 46 LYS 46 219 219 LYS LYS Z . n D 3 47 GLN 47 220 220 GLN GLN Z . n D 3 48 MET 48 221 221 MET MET Z . n D 3 49 CYS 49 222 222 CYS CYS Z . n D 3 50 PRO 50 223 223 PRO PRO Z . n D 3 51 SER 51 224 224 SER SER Z . n D 3 52 LEU 52 225 225 LEU LEU Z . n D 3 53 ASP 53 226 226 ASP ASP Z . n D 3 54 VAL 54 227 227 VAL VAL Z . n D 3 55 ASP 55 228 228 ASP ASP Z . n D 3 56 SER 56 229 229 SER SER Z . n D 3 57 ILE 57 230 230 ILE ILE Z . n D 3 58 ILE 58 231 231 ILE ILE Z . n D 3 59 PRO 59 232 232 PRO PRO Z . n D 3 60 ARG 60 233 233 ARG ARG Z . n D 3 61 THR 61 234 234 THR THR Z . n D 3 62 PRO 62 235 235 PRO PRO Z . n D 3 63 ASP 63 236 236 ASP ASP Z . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 HOH 1 2001 2001 HOH HOH A . E 4 HOH 2 2002 2002 HOH HOH A . E 4 HOH 3 2003 2003 HOH HOH A . E 4 HOH 4 2004 2004 HOH HOH A . E 4 HOH 5 2005 2005 HOH HOH A . E 4 HOH 6 2006 2006 HOH HOH A . E 4 HOH 7 2007 2007 HOH HOH A . E 4 HOH 8 2008 2008 HOH HOH A . E 4 HOH 9 2009 2009 HOH HOH A . E 4 HOH 10 2010 2010 HOH HOH A . E 4 HOH 11 2011 2011 HOH HOH A . E 4 HOH 12 2012 2012 HOH HOH A . E 4 HOH 13 2013 2013 HOH HOH A . E 4 HOH 14 2014 2014 HOH HOH A . E 4 HOH 15 2015 2015 HOH HOH A . E 4 HOH 16 2016 2016 HOH HOH A . E 4 HOH 17 2017 2017 HOH HOH A . F 4 HOH 1 2001 2001 HOH HOH B . F 4 HOH 2 2002 2002 HOH HOH B . F 4 HOH 3 2003 2003 HOH HOH B . F 4 HOH 4 2004 2004 HOH HOH B . F 4 HOH 5 2005 2005 HOH HOH B . F 4 HOH 6 2006 2006 HOH HOH B . F 4 HOH 7 2007 2007 HOH HOH B . F 4 HOH 8 2008 2008 HOH HOH B . F 4 HOH 9 2009 2009 HOH HOH B . F 4 HOH 10 2010 2010 HOH HOH B . F 4 HOH 11 2011 2011 HOH HOH B . F 4 HOH 12 2012 2012 HOH HOH B . F 4 HOH 13 2013 2013 HOH HOH B . F 4 HOH 14 2014 2014 HOH HOH B . F 4 HOH 15 2015 2015 HOH HOH B . G 4 HOH 1 2001 2001 HOH HOH Y . G 4 HOH 2 2002 2002 HOH HOH Y . G 4 HOH 3 2003 2003 HOH HOH Y . G 4 HOH 4 2004 2004 HOH HOH Y . G 4 HOH 5 2005 2005 HOH HOH Y . G 4 HOH 6 2006 2006 HOH HOH Y . G 4 HOH 7 2007 2007 HOH HOH Y . G 4 HOH 8 2008 2008 HOH HOH Y . G 4 HOH 9 2009 2009 HOH HOH Y . G 4 HOH 10 2010 2010 HOH HOH Y . G 4 HOH 11 2011 2011 HOH HOH Y . G 4 HOH 12 2012 2012 HOH HOH Y . G 4 HOH 13 2013 2013 HOH HOH Y . G 4 HOH 14 2014 2014 HOH HOH Y . G 4 HOH 15 2015 2015 HOH HOH Y . G 4 HOH 16 2016 2016 HOH HOH Y . G 4 HOH 17 2017 2017 HOH HOH Y . G 4 HOH 18 2018 2018 HOH HOH Y . G 4 HOH 19 2019 2019 HOH HOH Y . G 4 HOH 20 2020 2020 HOH HOH Y . G 4 HOH 21 2021 2021 HOH HOH Y . G 4 HOH 22 2022 2022 HOH HOH Y . G 4 HOH 23 2023 2023 HOH HOH Y . G 4 HOH 24 2024 2024 HOH HOH Y . G 4 HOH 25 2025 2025 HOH HOH Y . G 4 HOH 26 2026 2026 HOH HOH Y . G 4 HOH 27 2027 2027 HOH HOH Y . G 4 HOH 28 2028 2028 HOH HOH Y . G 4 HOH 29 2029 2029 HOH HOH Y . G 4 HOH 30 2030 2030 HOH HOH Y . G 4 HOH 31 2031 2031 HOH HOH Y . G 4 HOH 32 2032 2032 HOH HOH Y . G 4 HOH 33 2033 2033 HOH HOH Y . G 4 HOH 34 2034 2034 HOH HOH Y . G 4 HOH 35 2035 2035 HOH HOH Y . H 4 HOH 1 2001 2001 HOH HOH Z . H 4 HOH 2 2002 2002 HOH HOH Z . H 4 HOH 3 2003 2003 HOH HOH Z . H 4 HOH 4 2004 2004 HOH HOH Z . H 4 HOH 5 2005 2005 HOH HOH Z . H 4 HOH 6 2006 2006 HOH HOH Z . H 4 HOH 7 2007 2007 HOH HOH Z . H 4 HOH 8 2008 2008 HOH HOH Z . H 4 HOH 9 2009 2009 HOH HOH Z . H 4 HOH 10 2010 2010 HOH HOH Z . H 4 HOH 11 2011 2011 HOH HOH Z . H 4 HOH 12 2012 2012 HOH HOH Z . H 4 HOH 13 2013 2013 HOH HOH Z . H 4 HOH 14 2014 2014 HOH HOH Z . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-02-21 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-12-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' Other 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_database_status 5 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.status_code_sf' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.0 ? 1 XDS 'data reduction' . ? 2 XSCALE 'data scaling' . ? 3 PHASER phasing . ? 4 # _pdbx_entry_details.entry_id 2C9L _pdbx_entry_details.compound_details ;ENGINEERED RESIDUE IN CHAIN Y, SER 186 TO ALA ENGINEERED RESIDUE IN CHAIN Z, CYS 189 TO SER ENGINEERED RESIDUE IN CHAIN Y, SER 186 TO ALA ENGINEERED RESIDUE IN CHAIN Z, CYS 189 TO SER ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O Z ASP 236 ? ? O Z HOH 2014 ? ? 1.72 2 1 OXT Y ASP 236 ? ? O Y HOH 2034 ? ? 1.97 3 1 N Y THR 234 ? ? O Y HOH 2033 ? ? 2.05 4 1 NZ Z LYS 207 ? ? O Z HOH 2013 ? ? 2.14 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 110.45 108.30 2.15 0.30 N 2 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.29 108.30 2.99 0.30 N 3 1 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 110.50 108.30 2.20 0.30 N 4 1 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 110.22 108.30 1.92 0.30 N 5 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.11 108.30 1.81 0.30 N 6 1 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 110.26 108.30 1.96 0.30 N 7 1 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 110.42 108.30 2.12 0.30 N 8 1 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1 A DT 11 ? ? 110.57 108.30 2.27 0.30 N 9 1 "O4'" A DA 13 ? ? "C1'" A DA 13 ? ? N9 A DA 13 ? ? 110.22 108.30 1.92 0.30 N 10 1 "O4'" A DT 14 ? ? "C1'" A DT 14 ? ? N1 A DT 14 ? ? 110.90 108.30 2.60 0.30 N 11 1 "O4'" A DA 17 ? ? "C1'" A DA 17 ? ? N9 A DA 17 ? ? 110.80 108.30 2.50 0.30 N 12 1 "O4'" A DG 18 ? ? "C1'" A DG 18 ? ? N9 A DG 18 ? ? 111.15 108.30 2.85 0.30 N 13 1 "O4'" B DA 102 ? ? "C1'" B DA 102 ? ? N9 B DA 102 ? ? 110.10 108.30 1.80 0.30 N 14 1 "O4'" B DT 104 ? ? "C1'" B DT 104 ? ? N1 B DT 104 ? ? 110.41 108.30 2.11 0.30 N 15 1 "O4'" B DT 105 ? ? "C1'" B DT 105 ? ? N1 B DT 105 ? ? 110.80 108.30 2.50 0.30 N 16 1 "O4'" B DC 106 ? ? "C1'" B DC 106 ? ? N1 B DC 106 ? ? 110.96 108.30 2.66 0.30 N 17 1 "O4'" B DT 108 ? ? "C1'" B DT 108 ? ? N1 B DT 108 ? ? 110.13 108.30 1.83 0.30 N 18 1 "O4'" B DT 112 ? ? "C1'" B DT 112 ? ? N1 B DT 112 ? ? 111.72 108.30 3.42 0.30 N 19 1 "O4'" B DC 113 ? ? "C1'" B DC 113 ? ? N1 B DC 113 ? ? 110.68 108.30 2.38 0.30 N 20 1 "O4'" B DG 115 ? ? "C1'" B DG 115 ? ? N9 B DG 115 ? ? 111.25 108.30 2.95 0.30 N 21 1 "O4'" B DC 118 ? ? "C1'" B DC 118 ? ? N1 B DC 118 ? ? 110.57 108.30 2.27 0.30 N 22 1 "O4'" B DT 119 ? ? "C1'" B DT 119 ? ? N1 B DT 119 ? ? 111.76 108.30 3.46 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO Y 235 ? ? -67.13 -179.32 2 1 GLU Z 176 ? ? 106.94 121.09 3 1 LYS Z 178 ? ? -82.57 36.31 4 1 SER Z 224 ? ? -90.67 49.17 5 1 PRO Z 235 ? ? -62.79 72.89 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 Z LEU 175 ? CB ? D LEU 2 CB 2 1 Y 1 Z LEU 175 ? CG ? D LEU 2 CG 3 1 Y 1 Z LEU 175 ? CD1 ? D LEU 2 CD1 4 1 Y 1 Z LEU 175 ? CD2 ? D LEU 2 CD2 5 1 Y 1 Z GLU 176 ? CB ? D GLU 3 CB 6 1 Y 1 Z GLU 176 ? CG ? D GLU 3 CG 7 1 Y 1 Z GLU 176 ? CD ? D GLU 3 CD 8 1 Y 1 Z GLU 176 ? OE1 ? D GLU 3 OE1 9 1 Y 1 Z GLU 176 ? OE2 ? D GLU 3 OE2 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id Z _pdbx_unobs_or_zero_occ_residues.auth_comp_id MET _pdbx_unobs_or_zero_occ_residues.auth_seq_id 174 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id D _pdbx_unobs_or_zero_occ_residues.label_comp_id MET _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 HIS N N N N 270 HIS CA C N S 271 HIS C C N N 272 HIS O O N N 273 HIS CB C N N 274 HIS CG C Y N 275 HIS ND1 N Y N 276 HIS CD2 C Y N 277 HIS CE1 C Y N 278 HIS NE2 N Y N 279 HIS OXT O N N 280 HIS H H N N 281 HIS H2 H N N 282 HIS HA H N N 283 HIS HB2 H N N 284 HIS HB3 H N N 285 HIS HD1 H N N 286 HIS HD2 H N N 287 HIS HE1 H N N 288 HIS HE2 H N N 289 HIS HXT H N N 290 HOH O O N N 291 HOH H1 H N N 292 HOH H2 H N N 293 ILE N N N N 294 ILE CA C N S 295 ILE C C N N 296 ILE O O N N 297 ILE CB C N S 298 ILE CG1 C N N 299 ILE CG2 C N N 300 ILE CD1 C N N 301 ILE OXT O N N 302 ILE H H N N 303 ILE H2 H N N 304 ILE HA H N N 305 ILE HB H N N 306 ILE HG12 H N N 307 ILE HG13 H N N 308 ILE HG21 H N N 309 ILE HG22 H N N 310 ILE HG23 H N N 311 ILE HD11 H N N 312 ILE HD12 H N N 313 ILE HD13 H N N 314 ILE HXT H N N 315 LEU N N N N 316 LEU CA C N S 317 LEU C C N N 318 LEU O O N N 319 LEU CB C N N 320 LEU CG C N N 321 LEU CD1 C N N 322 LEU CD2 C N N 323 LEU OXT O N N 324 LEU H H N N 325 LEU H2 H N N 326 LEU HA H N N 327 LEU HB2 H N N 328 LEU HB3 H N N 329 LEU HG H N N 330 LEU HD11 H N N 331 LEU HD12 H N N 332 LEU HD13 H N N 333 LEU HD21 H N N 334 LEU HD22 H N N 335 LEU HD23 H N N 336 LEU HXT H N N 337 LYS N N N N 338 LYS CA C N S 339 LYS C C N N 340 LYS O O N N 341 LYS CB C N N 342 LYS CG C N N 343 LYS CD C N N 344 LYS CE C N N 345 LYS NZ N N N 346 LYS OXT O N N 347 LYS H H N N 348 LYS H2 H N N 349 LYS HA H N N 350 LYS HB2 H N N 351 LYS HB3 H N N 352 LYS HG2 H N N 353 LYS HG3 H N N 354 LYS HD2 H N N 355 LYS HD3 H N N 356 LYS HE2 H N N 357 LYS HE3 H N N 358 LYS HZ1 H N N 359 LYS HZ2 H N N 360 LYS HZ3 H N N 361 LYS HXT H N N 362 MET N N N N 363 MET CA C N S 364 MET C C N N 365 MET O O N N 366 MET CB C N N 367 MET CG C N N 368 MET SD S N N 369 MET CE C N N 370 MET OXT O N N 371 MET H H N N 372 MET H2 H N N 373 MET HA H N N 374 MET HB2 H N N 375 MET HB3 H N N 376 MET HG2 H N N 377 MET HG3 H N N 378 MET HE1 H N N 379 MET HE2 H N N 380 MET HE3 H N N 381 MET HXT H N N 382 PHE N N N N 383 PHE CA C N S 384 PHE C C N N 385 PHE O O N N 386 PHE CB C N N 387 PHE CG C Y N 388 PHE CD1 C Y N 389 PHE CD2 C Y N 390 PHE CE1 C Y N 391 PHE CE2 C Y N 392 PHE CZ C Y N 393 PHE OXT O N N 394 PHE H H N N 395 PHE H2 H N N 396 PHE HA H N N 397 PHE HB2 H N N 398 PHE HB3 H N N 399 PHE HD1 H N N 400 PHE HD2 H N N 401 PHE HE1 H N N 402 PHE HE2 H N N 403 PHE HZ H N N 404 PHE HXT H N N 405 PRO N N N N 406 PRO CA C N S 407 PRO C C N N 408 PRO O O N N 409 PRO CB C N N 410 PRO CG C N N 411 PRO CD C N N 412 PRO OXT O N N 413 PRO H H N N 414 PRO HA H N N 415 PRO HB2 H N N 416 PRO HB3 H N N 417 PRO HG2 H N N 418 PRO HG3 H N N 419 PRO HD2 H N N 420 PRO HD3 H N N 421 PRO HXT H N N 422 SER N N N N 423 SER CA C N S 424 SER C C N N 425 SER O O N N 426 SER CB C N N 427 SER OG O N N 428 SER OXT O N N 429 SER H H N N 430 SER H2 H N N 431 SER HA H N N 432 SER HB2 H N N 433 SER HB3 H N N 434 SER HG H N N 435 SER HXT H N N 436 THR N N N N 437 THR CA C N S 438 THR C C N N 439 THR O O N N 440 THR CB C N R 441 THR OG1 O N N 442 THR CG2 C N N 443 THR OXT O N N 444 THR H H N N 445 THR H2 H N N 446 THR HA H N N 447 THR HB H N N 448 THR HG1 H N N 449 THR HG21 H N N 450 THR HG22 H N N 451 THR HG23 H N N 452 THR HXT H N N 453 TYR N N N N 454 TYR CA C N S 455 TYR C C N N 456 TYR O O N N 457 TYR CB C N N 458 TYR CG C Y N 459 TYR CD1 C Y N 460 TYR CD2 C Y N 461 TYR CE1 C Y N 462 TYR CE2 C Y N 463 TYR CZ C Y N 464 TYR OH O N N 465 TYR OXT O N N 466 TYR H H N N 467 TYR H2 H N N 468 TYR HA H N N 469 TYR HB2 H N N 470 TYR HB3 H N N 471 TYR HD1 H N N 472 TYR HD2 H N N 473 TYR HE1 H N N 474 TYR HE2 H N N 475 TYR HH H N N 476 TYR HXT H N N 477 VAL N N N N 478 VAL CA C N S 479 VAL C C N N 480 VAL O O N N 481 VAL CB C N N 482 VAL CG1 C N N 483 VAL CG2 C N N 484 VAL OXT O N N 485 VAL H H N N 486 VAL H2 H N N 487 VAL HA H N N 488 VAL HB H N N 489 VAL HG11 H N N 490 VAL HG12 H N N 491 VAL HG13 H N N 492 VAL HG21 H N N 493 VAL HG22 H N N 494 VAL HG23 H N N 495 VAL HXT H N N 496 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 HIS N CA sing N N 269 HIS N H sing N N 270 HIS N H2 sing N N 271 HIS CA C sing N N 272 HIS CA CB sing N N 273 HIS CA HA sing N N 274 HIS C O doub N N 275 HIS C OXT sing N N 276 HIS CB CG sing N N 277 HIS CB HB2 sing N N 278 HIS CB HB3 sing N N 279 HIS CG ND1 sing Y N 280 HIS CG CD2 doub Y N 281 HIS ND1 CE1 doub Y N 282 HIS ND1 HD1 sing N N 283 HIS CD2 NE2 sing Y N 284 HIS CD2 HD2 sing N N 285 HIS CE1 NE2 sing Y N 286 HIS CE1 HE1 sing N N 287 HIS NE2 HE2 sing N N 288 HIS OXT HXT sing N N 289 HOH O H1 sing N N 290 HOH O H2 sing N N 291 ILE N CA sing N N 292 ILE N H sing N N 293 ILE N H2 sing N N 294 ILE CA C sing N N 295 ILE CA CB sing N N 296 ILE CA HA sing N N 297 ILE C O doub N N 298 ILE C OXT sing N N 299 ILE CB CG1 sing N N 300 ILE CB CG2 sing N N 301 ILE CB HB sing N N 302 ILE CG1 CD1 sing N N 303 ILE CG1 HG12 sing N N 304 ILE CG1 HG13 sing N N 305 ILE CG2 HG21 sing N N 306 ILE CG2 HG22 sing N N 307 ILE CG2 HG23 sing N N 308 ILE CD1 HD11 sing N N 309 ILE CD1 HD12 sing N N 310 ILE CD1 HD13 sing N N 311 ILE OXT HXT sing N N 312 LEU N CA sing N N 313 LEU N H sing N N 314 LEU N H2 sing N N 315 LEU CA C sing N N 316 LEU CA CB sing N N 317 LEU CA HA sing N N 318 LEU C O doub N N 319 LEU C OXT sing N N 320 LEU CB CG sing N N 321 LEU CB HB2 sing N N 322 LEU CB HB3 sing N N 323 LEU CG CD1 sing N N 324 LEU CG CD2 sing N N 325 LEU CG HG sing N N 326 LEU CD1 HD11 sing N N 327 LEU CD1 HD12 sing N N 328 LEU CD1 HD13 sing N N 329 LEU CD2 HD21 sing N N 330 LEU CD2 HD22 sing N N 331 LEU CD2 HD23 sing N N 332 LEU OXT HXT sing N N 333 LYS N CA sing N N 334 LYS N H sing N N 335 LYS N H2 sing N N 336 LYS CA C sing N N 337 LYS CA CB sing N N 338 LYS CA HA sing N N 339 LYS C O doub N N 340 LYS C OXT sing N N 341 LYS CB CG sing N N 342 LYS CB HB2 sing N N 343 LYS CB HB3 sing N N 344 LYS CG CD sing N N 345 LYS CG HG2 sing N N 346 LYS CG HG3 sing N N 347 LYS CD CE sing N N 348 LYS CD HD2 sing N N 349 LYS CD HD3 sing N N 350 LYS CE NZ sing N N 351 LYS CE HE2 sing N N 352 LYS CE HE3 sing N N 353 LYS NZ HZ1 sing N N 354 LYS NZ HZ2 sing N N 355 LYS NZ HZ3 sing N N 356 LYS OXT HXT sing N N 357 MET N CA sing N N 358 MET N H sing N N 359 MET N H2 sing N N 360 MET CA C sing N N 361 MET CA CB sing N N 362 MET CA HA sing N N 363 MET C O doub N N 364 MET C OXT sing N N 365 MET CB CG sing N N 366 MET CB HB2 sing N N 367 MET CB HB3 sing N N 368 MET CG SD sing N N 369 MET CG HG2 sing N N 370 MET CG HG3 sing N N 371 MET SD CE sing N N 372 MET CE HE1 sing N N 373 MET CE HE2 sing N N 374 MET CE HE3 sing N N 375 MET OXT HXT sing N N 376 PHE N CA sing N N 377 PHE N H sing N N 378 PHE N H2 sing N N 379 PHE CA C sing N N 380 PHE CA CB sing N N 381 PHE CA HA sing N N 382 PHE C O doub N N 383 PHE C OXT sing N N 384 PHE CB CG sing N N 385 PHE CB HB2 sing N N 386 PHE CB HB3 sing N N 387 PHE CG CD1 doub Y N 388 PHE CG CD2 sing Y N 389 PHE CD1 CE1 sing Y N 390 PHE CD1 HD1 sing N N 391 PHE CD2 CE2 doub Y N 392 PHE CD2 HD2 sing N N 393 PHE CE1 CZ doub Y N 394 PHE CE1 HE1 sing N N 395 PHE CE2 CZ sing Y N 396 PHE CE2 HE2 sing N N 397 PHE CZ HZ sing N N 398 PHE OXT HXT sing N N 399 PRO N CA sing N N 400 PRO N CD sing N N 401 PRO N H sing N N 402 PRO CA C sing N N 403 PRO CA CB sing N N 404 PRO CA HA sing N N 405 PRO C O doub N N 406 PRO C OXT sing N N 407 PRO CB CG sing N N 408 PRO CB HB2 sing N N 409 PRO CB HB3 sing N N 410 PRO CG CD sing N N 411 PRO CG HG2 sing N N 412 PRO CG HG3 sing N N 413 PRO CD HD2 sing N N 414 PRO CD HD3 sing N N 415 PRO OXT HXT sing N N 416 SER N CA sing N N 417 SER N H sing N N 418 SER N H2 sing N N 419 SER CA C sing N N 420 SER CA CB sing N N 421 SER CA HA sing N N 422 SER C O doub N N 423 SER C OXT sing N N 424 SER CB OG sing N N 425 SER CB HB2 sing N N 426 SER CB HB3 sing N N 427 SER OG HG sing N N 428 SER OXT HXT sing N N 429 THR N CA sing N N 430 THR N H sing N N 431 THR N H2 sing N N 432 THR CA C sing N N 433 THR CA CB sing N N 434 THR CA HA sing N N 435 THR C O doub N N 436 THR C OXT sing N N 437 THR CB OG1 sing N N 438 THR CB CG2 sing N N 439 THR CB HB sing N N 440 THR OG1 HG1 sing N N 441 THR CG2 HG21 sing N N 442 THR CG2 HG22 sing N N 443 THR CG2 HG23 sing N N 444 THR OXT HXT sing N N 445 TYR N CA sing N N 446 TYR N H sing N N 447 TYR N H2 sing N N 448 TYR CA C sing N N 449 TYR CA CB sing N N 450 TYR CA HA sing N N 451 TYR C O doub N N 452 TYR C OXT sing N N 453 TYR CB CG sing N N 454 TYR CB HB2 sing N N 455 TYR CB HB3 sing N N 456 TYR CG CD1 doub Y N 457 TYR CG CD2 sing Y N 458 TYR CD1 CE1 sing Y N 459 TYR CD1 HD1 sing N N 460 TYR CD2 CE2 doub Y N 461 TYR CD2 HD2 sing N N 462 TYR CE1 CZ doub Y N 463 TYR CE1 HE1 sing N N 464 TYR CE2 CZ sing Y N 465 TYR CE2 HE2 sing N N 466 TYR CZ OH sing N N 467 TYR OH HH sing N N 468 TYR OXT HXT sing N N 469 VAL N CA sing N N 470 VAL N H sing N N 471 VAL N H2 sing N N 472 VAL CA C sing N N 473 VAL CA CB sing N N 474 VAL CA HA sing N N 475 VAL C O doub N N 476 VAL C OXT sing N N 477 VAL CB CG1 sing N N 478 VAL CB CG2 sing N N 479 VAL CB HB sing N N 480 VAL CG1 HG11 sing N N 481 VAL CG1 HG12 sing N N 482 VAL CG1 HG13 sing N N 483 VAL CG2 HG21 sing N N 484 VAL CG2 HG22 sing N N 485 VAL CG2 HG23 sing N N 486 VAL OXT HXT sing N N 487 # _ndb_struct_conf_na.entry_id 2C9L _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DA 2 1_555 B DT 18 1_555 -0.116 -0.177 0.029 -5.774 -3.814 -5.978 1 A_DA2:DT119_B A 2 ? B 119 ? 20 1 1 A DG 3 1_555 B DC 17 1_555 0.432 -0.031 0.526 7.125 -5.647 -6.177 2 A_DG3:DC118_B A 3 ? B 118 ? 19 1 1 A DC 4 1_555 B DG 16 1_555 0.029 -0.039 -0.265 12.006 -10.092 -0.150 3 A_DC4:DG117_B A 4 ? B 117 ? 19 1 1 A DA 5 1_555 B DT 15 1_555 0.666 -0.273 0.054 4.818 -9.674 -3.907 4 A_DA5:DT116_B A 5 ? B 116 ? 20 1 1 A DC 6 1_555 B DG 14 1_555 -0.315 -0.164 0.059 1.767 -11.060 0.012 5 A_DC6:DG115_B A 6 ? B 115 ? 19 1 1 A DT 7 1_555 B DA 13 1_555 -0.369 -0.112 0.089 3.891 -8.869 2.524 6 A_DT7:DA114_B A 7 ? B 114 ? 20 1 1 A DG 8 1_555 B DC 12 1_555 -0.166 -0.082 -0.032 -4.331 -11.321 -1.249 7 A_DG8:DC113_B A 8 ? B 113 ? 19 1 1 A DA 9 1_555 B DT 11 1_555 0.137 0.001 -0.003 -4.262 -10.824 5.457 8 A_DA9:DT112_B A 9 ? B 112 ? 20 1 1 A DC 10 1_555 B DG 10 1_555 -0.274 -0.157 0.137 -0.225 -12.761 -2.454 9 A_DC10:DG111_B A 10 ? B 111 ? 19 1 1 A DT 11 1_555 B DA 9 1_555 -0.189 -0.107 -0.003 1.030 -12.577 4.242 10 A_DT11:DA110_B A 11 ? B 110 ? 20 1 1 A DC 12 1_555 B DG 8 1_555 0.302 -0.078 -0.012 1.450 -9.507 -1.158 11 A_DC12:DG109_B A 12 ? B 109 ? 19 1 1 A DA 13 1_555 B DT 7 1_555 0.133 -0.033 -0.024 -0.163 -9.419 -0.262 12 A_DA13:DT108_B A 13 ? B 108 ? 20 1 1 A DT 14 1_555 B DA 6 1_555 -0.610 0.052 0.005 12.864 -8.856 3.665 13 A_DT14:DA107_B A 14 ? B 107 ? 20 1 1 A DG 15 1_555 B DC 5 1_555 0.406 -0.038 -0.001 -4.093 -15.066 2.891 14 A_DG15:DC106_B A 15 ? B 106 ? 19 1 1 A DA 16 1_555 B DT 4 1_555 0.193 -0.042 -0.357 -6.595 -11.557 1.804 15 A_DA16:DT105_B A 16 ? B 105 ? 20 1 1 A DA 17 1_555 B DT 3 1_555 0.453 -0.056 -0.179 -0.602 -14.228 -4.932 16 A_DA17:DT104_B A 17 ? B 104 ? 20 1 1 A DG 18 1_555 B DC 2 1_555 0.385 -0.051 0.085 -0.978 -13.993 -1.609 17 A_DG18:DC103_B A 18 ? B 103 ? 19 1 1 A DT 19 1_555 B DA 1 1_555 0.587 -0.446 0.028 -4.245 -2.667 -1.490 18 A_DT19:DA102_B A 19 ? B 102 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DA 2 1_555 B DT 18 1_555 A DG 3 1_555 B DC 17 1_555 0.015 0.452 2.988 -3.197 -0.966 31.303 0.997 -0.572 2.957 -1.784 5.903 31.477 1 AA_DA2DG3:DC118DT119_BB A 2 ? B 119 ? A 3 ? B 118 ? 1 A DG 3 1_555 B DC 17 1_555 A DC 4 1_555 B DG 16 1_555 0.442 -0.153 3.148 8.016 1.780 34.876 -0.498 0.408 3.158 2.920 -13.150 35.801 2 AA_DG3DC4:DG117DC118_BB A 3 ? B 118 ? A 4 ? B 117 ? 1 A DC 4 1_555 B DG 16 1_555 A DA 5 1_555 B DT 15 1_555 -0.362 0.065 3.457 -3.196 1.876 38.543 -0.146 0.130 3.474 2.834 4.827 38.714 3 AA_DC4DA5:DT116DG117_BB A 4 ? B 117 ? A 5 ? B 116 ? 1 A DA 5 1_555 B DT 15 1_555 A DC 6 1_555 B DG 14 1_555 0.005 -1.271 3.266 -0.456 -0.615 32.689 -2.152 -0.088 3.289 -1.093 0.811 32.698 4 AA_DA5DC6:DG115DT116_BB A 5 ? B 116 ? A 6 ? B 115 ? 1 A DC 6 1_555 B DG 14 1_555 A DT 7 1_555 B DA 13 1_555 0.251 -0.471 3.245 1.713 1.291 30.939 -1.127 -0.143 3.232 2.417 -3.206 31.012 5 AA_DC6DT7:DA114DG115_BB A 6 ? B 115 ? A 7 ? B 114 ? 1 A DT 7 1_555 B DA 13 1_555 A DG 8 1_555 B DC 12 1_555 -0.607 0.226 3.393 -3.383 4.938 41.122 -0.232 0.478 3.433 6.985 4.786 41.536 6 AA_DT7DG8:DC113DA114_BB A 7 ? B 114 ? A 8 ? B 113 ? 1 A DG 8 1_555 B DC 12 1_555 A DA 9 1_555 B DT 11 1_555 0.441 -0.011 3.321 -1.452 7.368 33.790 -1.170 -0.968 3.226 12.486 2.460 34.591 7 AA_DG8DA9:DT112DC113_BB A 8 ? B 113 ? A 9 ? B 112 ? 1 A DA 9 1_555 B DT 11 1_555 A DC 10 1_555 B DG 10 1_555 -1.027 -0.442 3.166 -1.697 0.622 33.056 -0.878 1.523 3.205 1.092 2.979 33.104 8 AA_DA9DC10:DG111DT112_BB A 9 ? B 112 ? A 10 ? B 111 ? 1 A DC 10 1_555 B DG 10 1_555 A DT 11 1_555 B DA 9 1_555 0.968 0.016 3.198 3.455 2.957 37.191 -0.360 -1.058 3.264 4.615 -5.392 37.458 9 AA_DC10DT11:DA110DG111_BB A 10 ? B 111 ? A 11 ? B 110 ? 1 A DT 11 1_555 B DA 9 1_555 A DC 12 1_555 B DG 8 1_555 -0.134 -0.007 3.404 1.607 5.526 34.695 -0.870 0.472 3.354 9.188 -2.672 35.155 10 AA_DT11DC12:DG109DA110_BB A 11 ? B 110 ? A 12 ? B 109 ? 1 A DC 12 1_555 B DG 8 1_555 A DA 13 1_555 B DT 7 1_555 1.001 0.679 3.233 6.199 7.999 37.304 0.006 -0.722 3.418 12.231 -9.480 38.605 11 AA_DC12DA13:DT108DG109_BB A 12 ? B 109 ? A 13 ? B 108 ? 1 A DA 13 1_555 B DT 7 1_555 A DT 14 1_555 B DA 6 1_555 0.345 -0.679 3.018 -1.221 -1.072 26.857 -1.204 -1.031 3.024 -2.305 2.625 26.905 12 AA_DA13DT14:DA107DT108_BB A 13 ? B 108 ? A 14 ? B 107 ? 1 A DT 14 1_555 B DA 6 1_555 A DG 15 1_555 B DC 5 1_555 0.135 -0.078 3.615 1.833 5.235 44.721 -0.621 0.006 3.587 6.849 -2.398 45.047 13 AA_DT14DG15:DC106DA107_BB A 14 ? B 107 ? A 15 ? B 106 ? 1 A DG 15 1_555 B DC 5 1_555 A DA 16 1_555 B DT 4 1_555 -0.119 0.358 3.423 2.212 5.425 32.709 -0.332 0.598 3.421 9.538 -3.888 33.215 14 AA_DG15DA16:DT105DC106_BB A 15 ? B 106 ? A 16 ? B 105 ? 1 A DA 16 1_555 B DT 4 1_555 A DA 17 1_555 B DT 3 1_555 -0.524 0.102 3.210 0.003 4.348 31.149 -0.612 0.967 3.194 8.047 -0.006 31.444 15 AA_DA16DA17:DT104DT105_BB A 16 ? B 105 ? A 17 ? B 104 ? 1 A DA 17 1_555 B DT 3 1_555 A DG 18 1_555 B DC 2 1_555 0.389 -0.261 3.253 -0.307 4.271 33.481 -1.136 -0.720 3.193 7.376 0.530 33.746 16 AA_DA17DG18:DC103DT104_BB A 17 ? B 104 ? A 18 ? B 103 ? 1 A DG 18 1_555 B DC 2 1_555 A DT 19 1_555 B DA 1 1_555 0.356 -0.955 3.421 -0.240 2.246 38.880 -1.715 -0.564 3.360 3.371 0.360 38.943 17 AA_DG18DT19:DA102DC103_BB A 18 ? B 103 ? A 19 ? B 102 ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1YSA _pdbx_initial_refinement_model.details 'PDB ENTRY 1YSA' #