HEADER ISOMERASE 23-DEC-05 2CB0 TITLE CRYSTAL STRUCTURE OF GLUCOSAMINE 6-PHOSPHATE DEAMINASE FROM TITLE 2 PYROCOCCUS FURIOSUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSAMINE-FRUCTOSE-6-PHOSPHATE COMPND 3 AMINOTRANSFERASE; COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 2261; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET30A; SOURCE 8 OTHER_DETAILS: DSM 3638 KEYWDS ISOMERASE, GLUCOSAMINE 6-PHOSPHATE DEAMINASE, CHITIN KEYWDS 2 DEGRADATION, ALDOSE-KETOSE ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.J.KIM,M.H.KIM,B.S.KANG REVDAT 4 16-JUN-09 2CB0 1 REMARK REVDAT 3 24-FEB-09 2CB0 1 VERSN REVDAT 2 27-MAR-07 2CB0 1 REMARK REVDAT 1 13-MAR-07 2CB0 0 JRNL AUTH K.J.KIM,M.H.KIM,G.KIM,B.S.KANG JRNL TITL THE CRYSTAL STRUCTURE OF A NOVEL GLUCOSAMINE-6- JRNL TITL 2 PHOSPHATE DEAMINASE FROM THE HYPERTHERMOPHILIC JRNL TITL 3 ARCHAEON PYROCOCCUS FURIOSUS JRNL REF PROTEINS V. 68 413 2007 JRNL REFN ISSN 0887-3585 JRNL PMID 17387737 JRNL DOI 10.1002/PROT.21322 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 36164 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1922 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 670 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1830 REMARK 3 BIN FREE R VALUE SET COUNT : 40 REMARK 3 BIN FREE R VALUE : 0.2520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5099 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 124 REMARK 3 SOLVENT ATOMS : 290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.195 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.156 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.091 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.887 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5344 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7238 ; 1.498 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 651 ; 5.750 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 229 ;37.392 ;24.017 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 950 ;15.484 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;23.688 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 818 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3963 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2788 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3652 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 355 ; 0.157 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 38 ; 0.256 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 18 ; 0.169 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3383 ; 1.077 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5282 ; 1.437 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2258 ; 2.548 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1956 ; 3.770 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 2CB0 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-DEC-05. REMARK 100 THE PDBE ID CODE IS EBI-26929. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97930 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40401 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 74.0 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 100.32500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 100.32500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 30.74000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.94500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 30.74000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.94500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 100.32500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 30.74000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 46.94500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 100.32500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 30.74000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 46.94500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.33 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 HOH A2014 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2093 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 321 REMARK 465 VAL A 322 REMARK 465 VAL A 323 REMARK 465 ARG A 324 REMARK 465 TRP A 325 REMARK 465 LEU A 326 REMARK 465 GLU A 327 REMARK 465 HIS A 328 REMARK 465 HIS A 329 REMARK 465 HIS A 330 REMARK 465 HIS A 331 REMARK 465 HIS A 332 REMARK 465 HIS A 333 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 72 - O HOH A 2041 2.19 REMARK 500 OE1 GLU A 248 - O HOH A 2143 2.17 REMARK 500 ND2 ASN A 269 - O HOH A 2154 2.11 REMARK 500 O GLN B 244 - O HOH B 2092 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 REMARK 500 OE1 GLN A 272 OE1 GLN A 272 3555 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 71 31.32 -140.72 REMARK 500 THR A 136 -93.50 -128.40 REMARK 500 ASP A 234 -155.08 -142.62 REMARK 500 PHE A 318 -17.28 72.81 REMARK 500 THR B 136 -94.14 -131.42 REMARK 500 ASP B 234 -157.47 -139.13 REMARK 500 GLN B 244 -75.01 -67.41 REMARK 500 ARG B 261 2.94 84.85 REMARK 500 PHE B 318 -33.04 75.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1321 DBREF 2CB0 A 1 325 UNP Q8U3U3 Q8U3U3_PYRFU 1 325 DBREF 2CB0 A 326 333 PDB 2CB0 2CB0 326 333 DBREF 2CB0 B 1 325 UNP Q8U3U3 Q8U3U3_PYRFU 1 325 DBREF 2CB0 B 326 333 PDB 2CB0 2CB0 326 333 SEQRES 1 A 333 MSE LYS THR LEU THR GLU ILE LYS GLN THR PRO LYS GLY SEQRES 2 A 333 ILE ILE LYS ALA ASP GLU SER PHE ASN GLN VAL LYS ASP SEQRES 3 A 333 LYS ILE ARG LEU PRO ARG ARG ILE LEU TYR LEU GLY CYS SEQRES 4 A 333 GLY SER SER HIS PHE LEU ALA LYS LEU LEU ALA MSE VAL SEQRES 5 A 333 THR ASN MSE HIS GLY GLY THR GLY VAL ALA LEU PRO CYS SEQRES 6 A 333 SER GLU PHE LEU TYR SER LYS GLU ALA TYR PRO ILE GLY SEQRES 7 A 333 LYS PRO GLU LEU VAL VAL GLY ILE SER ARG SER GLY GLU SEQRES 8 A 333 THR THR GLU VAL LEU LEU ALA LEU GLU LYS ILE ASN THR SEQRES 9 A 333 PRO LYS LEU GLY ILE SER ALA TYR GLU SER SER LEU THR SEQRES 10 A 333 ARG ALA CYS ASP TYR SER LEU VAL VAL PRO THR ILE GLU SEQRES 11 A 333 GLU SER VAL VAL MSE THR HIS SER PHE THR ALA PHE TYR SEQRES 12 A 333 PHE ALA TYR LEU GLN LEU LEU ARG HIS SER TYR GLY LEU SEQRES 13 A 333 PRO LEU LEU GLU ALA THR GLU VAL ALA LYS ALA THR GLU SEQRES 14 A 333 LYS ALA LEU GLU TYR GLU ASN TYR ILE LYS GLU ILE VAL SEQRES 15 A 333 GLU ASP PHE ASP PHE GLN ASN VAL ILE PHE LEU GLY SER SEQRES 16 A 333 GLY LEU LEU TYR PRO VAL ALA LEU GLU ALA SER LEU LYS SEQRES 17 A 333 MSE LYS GLU MSE ALA ILE PHE TRP SER GLU ALA TYR PRO SEQRES 18 A 333 THR PHE GLU VAL ARG HIS GLY PHE LYS ALA ILE ALA ASP SEQRES 19 A 333 GLU ASN THR LEU VAL VAL LEU MSE ALA GLN GLU LEU PHE SEQRES 20 A 333 GLU TRP HIS LYS LYS LEU VAL ASN GLU PHE LYS GLY GLN SEQRES 21 A 333 ARG ALA ARG VAL LEU LEU ILE SER ASN SER GLN GLN GLU SEQRES 22 A 333 PHE GLY GLN ASP TYR SER ILE GLU VAL PRO ARG LEU SER SEQRES 23 A 333 LYS ASP ALA THR PRO ILE PRO TYR LEU PRO VAL VAL GLN SEQRES 24 A 333 LEU LEU SER TYR TYR LYS ALA VAL ALA ARG GLY LEU ASN SEQRES 25 A 333 PRO ASP ASN PRO ARG PHE LEU ASP LYS VAL VAL ARG TRP SEQRES 26 A 333 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 333 MSE LYS THR LEU THR GLU ILE LYS GLN THR PRO LYS GLY SEQRES 2 B 333 ILE ILE LYS ALA ASP GLU SER PHE ASN GLN VAL LYS ASP SEQRES 3 B 333 LYS ILE ARG LEU PRO ARG ARG ILE LEU TYR LEU GLY CYS SEQRES 4 B 333 GLY SER SER HIS PHE LEU ALA LYS LEU LEU ALA MSE VAL SEQRES 5 B 333 THR ASN MSE HIS GLY GLY THR GLY VAL ALA LEU PRO CYS SEQRES 6 B 333 SER GLU PHE LEU TYR SER LYS GLU ALA TYR PRO ILE GLY SEQRES 7 B 333 LYS PRO GLU LEU VAL VAL GLY ILE SER ARG SER GLY GLU SEQRES 8 B 333 THR THR GLU VAL LEU LEU ALA LEU GLU LYS ILE ASN THR SEQRES 9 B 333 PRO LYS LEU GLY ILE SER ALA TYR GLU SER SER LEU THR SEQRES 10 B 333 ARG ALA CYS ASP TYR SER LEU VAL VAL PRO THR ILE GLU SEQRES 11 B 333 GLU SER VAL VAL MSE THR HIS SER PHE THR ALA PHE TYR SEQRES 12 B 333 PHE ALA TYR LEU GLN LEU LEU ARG HIS SER TYR GLY LEU SEQRES 13 B 333 PRO LEU LEU GLU ALA THR GLU VAL ALA LYS ALA THR GLU SEQRES 14 B 333 LYS ALA LEU GLU TYR GLU ASN TYR ILE LYS GLU ILE VAL SEQRES 15 B 333 GLU ASP PHE ASP PHE GLN ASN VAL ILE PHE LEU GLY SER SEQRES 16 B 333 GLY LEU LEU TYR PRO VAL ALA LEU GLU ALA SER LEU LYS SEQRES 17 B 333 MSE LYS GLU MSE ALA ILE PHE TRP SER GLU ALA TYR PRO SEQRES 18 B 333 THR PHE GLU VAL ARG HIS GLY PHE LYS ALA ILE ALA ASP SEQRES 19 B 333 GLU ASN THR LEU VAL VAL LEU MSE ALA GLN GLU LEU PHE SEQRES 20 B 333 GLU TRP HIS LYS LYS LEU VAL ASN GLU PHE LYS GLY GLN SEQRES 21 B 333 ARG ALA ARG VAL LEU LEU ILE SER ASN SER GLN GLN GLU SEQRES 22 B 333 PHE GLY GLN ASP TYR SER ILE GLU VAL PRO ARG LEU SER SEQRES 23 B 333 LYS ASP ALA THR PRO ILE PRO TYR LEU PRO VAL VAL GLN SEQRES 24 B 333 LEU LEU SER TYR TYR LYS ALA VAL ALA ARG GLY LEU ASN SEQRES 25 B 333 PRO ASP ASN PRO ARG PHE LEU ASP LYS VAL VAL ARG TRP SEQRES 26 B 333 LEU GLU HIS HIS HIS HIS HIS HIS MODRES 2CB0 MSE A 1 MET SELENOMETHIONINE MODRES 2CB0 MSE A 51 MET SELENOMETHIONINE MODRES 2CB0 MSE A 55 MET SELENOMETHIONINE MODRES 2CB0 MSE A 135 MET SELENOMETHIONINE MODRES 2CB0 MSE A 209 MET SELENOMETHIONINE MODRES 2CB0 MSE A 212 MET SELENOMETHIONINE MODRES 2CB0 MSE A 242 MET SELENOMETHIONINE MODRES 2CB0 MSE B 1 MET SELENOMETHIONINE MODRES 2CB0 MSE B 51 MET SELENOMETHIONINE MODRES 2CB0 MSE B 55 MET SELENOMETHIONINE MODRES 2CB0 MSE B 135 MET SELENOMETHIONINE MODRES 2CB0 MSE B 209 MET SELENOMETHIONINE MODRES 2CB0 MSE B 212 MET SELENOMETHIONINE MODRES 2CB0 MSE B 242 MET SELENOMETHIONINE HET MSE A 1 11 HET MSE A 51 8 HET MSE A 55 8 HET MSE A 135 8 HET MSE A 209 8 HET MSE A 212 8 HET MSE A 242 8 HET MSE B 1 8 HET MSE B 51 8 HET MSE B 55 11 HET MSE B 135 8 HET MSE B 209 8 HET MSE B 212 8 HET MSE B 242 8 HET GOL A1321 6 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL FORMUL 1 MSE 14(C5 H11 N O2 SE) FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *290(H2 O1) HELIX 1 1 MSE A 1 LYS A 8 1 8 HELIX 2 2 GLN A 9 LYS A 25 1 17 HELIX 3 3 GLY A 40 HIS A 56 1 17 HELIX 4 4 CYS A 65 LYS A 72 1 8 HELIX 5 5 GLU A 73 TYR A 75 5 3 HELIX 6 6 THR A 92 LYS A 101 1 10 HELIX 7 7 SER A 114 ALA A 119 1 6 HELIX 8 8 THR A 136 TYR A 154 1 19 HELIX 9 9 GLU A 160 GLU A 173 1 14 HELIX 10 10 TYR A 174 PHE A 185 1 12 HELIX 11 11 LEU A 197 ILE A 214 1 18 HELIX 12 12 PHE A 223 HIS A 227 5 5 HELIX 13 13 GLY A 228 ALA A 233 5 6 HELIX 14 14 PHE A 247 GLN A 260 1 14 HELIX 15 15 PRO A 293 ARG A 309 1 17 HELIX 16 16 MSE B 1 GLN B 9 1 9 HELIX 17 17 GLN B 9 LYS B 25 1 17 HELIX 18 18 GLY B 40 HIS B 56 1 17 HELIX 19 19 CYS B 65 LYS B 72 1 8 HELIX 20 20 GLU B 73 TYR B 75 5 3 HELIX 21 21 THR B 92 LYS B 101 1 10 HELIX 22 22 SER B 114 ALA B 119 1 6 HELIX 23 23 THR B 136 TYR B 154 1 19 HELIX 24 24 GLU B 160 GLU B 173 1 14 HELIX 25 25 TYR B 174 PHE B 185 1 12 HELIX 26 26 LEU B 197 ILE B 214 1 18 HELIX 27 27 PHE B 223 HIS B 227 5 5 HELIX 28 28 GLY B 228 ALA B 233 5 6 HELIX 29 29 PHE B 247 GLY B 259 1 13 HELIX 30 30 PRO B 293 ARG B 309 1 17 SHEET 1 AA 5 THR A 59 PRO A 64 0 SHEET 2 AA 5 ARG A 33 GLY A 38 1 O ILE A 34 N VAL A 61 SHEET 3 AA 5 LEU A 82 ILE A 86 1 O LEU A 82 N LEU A 35 SHEET 4 AA 5 LYS A 106 SER A 110 1 O LEU A 107 N GLY A 85 SHEET 5 AA 5 TYR A 122 VAL A 125 1 O TYR A 122 N GLY A 108 SHEET 1 AB 5 SER A 217 PRO A 221 0 SHEET 2 AB 5 ASN A 189 GLY A 194 1 O VAL A 190 N GLU A 218 SHEET 3 AB 5 THR A 237 ALA A 243 1 O LEU A 238 N ILE A 191 SHEET 4 AB 5 ARG A 263 SER A 268 1 O ARG A 263 N VAL A 239 SHEET 5 AB 5 TYR A 278 GLU A 281 1 O TYR A 278 N LEU A 266 SHEET 1 BA 5 THR B 59 PRO B 64 0 SHEET 2 BA 5 ARG B 33 GLY B 38 1 O ILE B 34 N VAL B 61 SHEET 3 BA 5 LEU B 82 ILE B 86 1 O LEU B 82 N LEU B 35 SHEET 4 BA 5 LYS B 106 SER B 110 1 O LEU B 107 N GLY B 85 SHEET 5 BA 5 TYR B 122 VAL B 125 1 O TYR B 122 N GLY B 108 SHEET 1 BB 5 SER B 217 PRO B 221 0 SHEET 2 BB 5 ASN B 189 GLY B 194 1 O VAL B 190 N GLU B 218 SHEET 3 BB 5 THR B 237 ALA B 243 1 O LEU B 238 N ILE B 191 SHEET 4 BB 5 ARG B 263 SER B 268 1 O ARG B 263 N VAL B 239 SHEET 5 BB 5 TYR B 278 GLU B 281 1 O TYR B 278 N LEU B 266 LINK C MSE A 1 N LYS A 2 1555 1555 1.33 LINK C ALA A 50 N MSE A 51 1555 1555 1.32 LINK C MSE A 51 N VAL A 52 1555 1555 1.33 LINK C ASN A 54 N MSE A 55 1555 1555 1.33 LINK C MSE A 55 N HIS A 56 1555 1555 1.33 LINK C VAL A 134 N MSE A 135 1555 1555 1.33 LINK C MSE A 135 N THR A 136 1555 1555 1.33 LINK C LYS A 208 N MSE A 209 1555 1555 1.33 LINK C MSE A 209 N LYS A 210 1555 1555 1.33 LINK C GLU A 211 N MSE A 212 1555 1555 1.34 LINK C MSE A 212 N ALA A 213 1555 1555 1.34 LINK C LEU A 241 N MSE A 242 1555 1555 1.33 LINK C MSE A 242 N ALA A 243 1555 1555 1.32 LINK C MSE B 1 N LYS B 2 1555 1555 1.34 LINK C ALA B 50 N MSE B 51 1555 1555 1.34 LINK C MSE B 51 N VAL B 52 1555 1555 1.33 LINK C ASN B 54 N MSE B 55 1555 1555 1.33 LINK C MSE B 55 N HIS B 56 1555 1555 1.33 LINK C VAL B 134 N MSE B 135 1555 1555 1.33 LINK C MSE B 135 N THR B 136 1555 1555 1.33 LINK C LYS B 208 N MSE B 209 1555 1555 1.33 LINK C MSE B 209 N LYS B 210 1555 1555 1.33 LINK C GLU B 211 N MSE B 212 1555 1555 1.34 LINK C MSE B 212 N ALA B 213 1555 1555 1.33 LINK C LEU B 241 N MSE B 242 1555 1555 1.33 LINK C MSE B 242 N ALA B 243 1555 1555 1.33 SITE 1 AC1 8 ILE A 102 ASN A 103 THR A 104 LYS A 106 SITE 2 AC1 8 ASP A 121 HOH A2172 GLU B 91 ARG B 324 CRYST1 61.480 93.890 200.650 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016265 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010651 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004984 0.00000 HETATM 1 N MSE A 1 36.208 33.232 39.919 1.00 34.86 N HETATM 2 CA MSE A 1 35.383 33.742 38.782 1.00 35.11 C HETATM 3 C MSE A 1 34.420 34.829 39.171 1.00 30.67 C HETATM 4 O MSE A 1 33.674 34.697 40.135 1.00 29.44 O HETATM 5 CB MSE A 1 34.611 32.631 38.095 1.00 36.15 C HETATM 6 CG AMSE A 1 35.410 31.890 37.086 0.50 37.56 C HETATM 7 SE AMSE A 1 34.372 31.847 35.491 0.50 42.78 SE HETATM 8 CE AMSE A 1 35.174 30.233 34.674 0.50 38.19 C HETATM 9 CG BMSE A 1 35.264 32.161 36.792 0.50 38.17 C HETATM 10 SE BMSE A 1 37.149 31.579 36.942 0.50 45.66 SE HETATM 11 CE BMSE A 1 37.474 31.106 35.038 0.50 40.32 C